Wall clock time and date at job start Tue Mar 31 2020 06:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 C 1.52998 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47089 * 59.99700 * 4 3 2 6 6 N 1.46498 * 109.47073 * 59.99987 * 5 4 3 7 7 S 1.65602 * 119.99612 * 144.72141 * 6 5 4 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47130 * 179.97438 * 11 10 7 13 13 C 1.50692 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00231 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99857 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00269 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47223 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47323 * 120.00013 * 17 15 13 20 20 H 1.48497 * 109.47261 * 240.00008 * 17 15 13 21 21 C 1.52998 * 109.46913 * 300.00253 * 5 4 3 22 22 C 1.52996 * 109.47336 * 60.00343 * 21 5 4 23 23 H 1.09003 * 109.46839 * 60.00208 * 1 2 3 24 24 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47138 * 300.00460 * 1 2 3 26 26 H 1.09003 * 109.46839 * 119.99792 * 2 1 3 27 27 H 1.08996 * 109.47329 * 59.99657 * 3 2 1 28 28 H 1.09003 * 109.46933 * 299.99734 * 3 2 1 29 29 H 1.09003 * 109.46839 * 299.99792 * 4 3 2 30 30 H 1.08994 * 109.47488 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46856 * 180.02562 * 5 4 3 32 32 H 0.97001 * 120.00384 * 325.00619 * 6 5 4 33 33 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 34 34 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 35 35 H 1.08994 * 109.46789 * 299.99279 * 11 10 7 36 36 H 1.08993 * 109.47045 * 59.99537 * 11 10 7 37 37 H 1.09003 * 109.47270 * 300.00013 * 12 11 10 38 38 H 1.09000 * 109.46896 * 60.00012 * 12 11 10 39 39 H 0.96993 * 120.00008 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46713 * 179.97438 * 21 5 4 41 41 H 1.08999 * 109.47174 * 299.99288 * 21 5 4 42 42 H 1.09003 * 109.47419 * 179.97438 * 22 21 5 43 43 H 1.08994 * 109.47433 * 59.99562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0806 0.7209 -1.2483 6 7 3.5927 1.4113 -2.4448 7 16 4.5456 1.4990 -3.7964 8 8 3.7733 2.2524 -4.7213 9 8 5.7917 1.9843 -3.3159 10 6 4.7035 -0.2208 -4.3512 11 6 5.5721 -0.2730 -5.6097 12 6 5.7057 -1.7237 -6.0773 13 6 6.5607 -1.7750 -7.3171 14 1 6.9684 -0.8641 -7.7301 15 6 6.8235 -2.9850 -7.9238 16 7 6.3275 -4.0943 -7.4207 17 14 7.8839 -3.0487 -9.4603 18 1 8.3163 -1.6745 -9.8207 19 1 9.0791 -3.8915 -9.2023 20 1 7.0999 -3.6309 -10.5791 21 6 3.5705 -0.7216 -1.2482 22 6 2.0405 -0.7215 -1.2489 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9562 -0.8900 29 1 3.9329 0.9287 0.8909 30 1 3.9334 2.4700 0.0002 31 1 5.1706 0.7205 -1.2475 32 1 2.7133 1.8206 -2.4439 33 1 5.1675 -0.8154 -3.5642 34 1 3.7153 -0.6226 -4.5753 35 1 5.1077 0.3213 -6.3965 36 1 6.5602 0.1288 -5.3860 37 1 6.1703 -2.3178 -5.2903 38 1 4.7176 -2.1258 -6.3009 39 1 6.5120 -4.9454 -7.8477 40 1 3.9338 -1.2354 -2.1382 41 1 3.9335 -1.2353 -0.3580 42 1 1.6771 -1.7492 -1.2493 43 1 1.6776 -0.2079 -2.1391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068918097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:29 Heat of formation + Delta-G solvation = -117.255946 kcal Electronic energy + Delta-G solvation = -21891.132618 eV Core-core repulsion = 18675.647488 eV Total energy + Delta-G solvation = -3215.485130 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.51826 -36.85185 -35.72339 -34.68209 -34.59678 -32.20748 -31.03518 -30.66681 -27.79935 -26.29321 -23.77309 -22.84690 -21.55616 -20.72111 -19.98045 -18.88561 -17.64891 -16.63803 -16.28728 -15.75242 -15.37546 -15.10890 -14.60132 -14.47357 -14.31921 -14.17627 -13.74233 -13.45209 -12.67762 -12.44762 -12.24918 -12.24444 -12.06505 -11.95283 -11.83448 -11.77204 -11.74914 -11.44648 -11.34435 -11.20342 -10.93617 -10.84422 -10.73881 -10.55676 -10.35781 -10.25662 -9.94510 -9.60970 -9.30392 -9.05933 -8.41092 -6.05898 -4.08700 0.50942 2.89198 3.29352 3.36929 3.41969 3.97705 4.35837 4.42472 4.43537 4.47819 4.52121 4.81557 4.91279 5.01583 5.14741 5.16006 5.21379 5.27617 5.30394 5.32392 5.38617 5.42030 5.56429 5.59357 5.77455 5.80132 5.84120 5.91039 5.92405 6.03157 6.11575 6.13764 6.26365 6.28367 6.46394 6.87721 6.97929 7.57294 7.67208 7.92435 8.33145 8.97823 9.56078 11.05362 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.003674 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.712843 B = 7618.353461 C = 8288.204174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.121 4.121 5 C 0.147 3.853 6 N -1.117 6.117 7 S 2.599 3.401 8 O -0.966 6.966 9 O -0.964 6.964 10 C -0.610 4.610 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.148 4.148 22 C -0.114 4.114 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.413 0.587 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.368 8.077 17.857 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.153 4.153 4 C -0.160 4.160 5 C 0.040 3.960 6 N -0.875 5.875 7 S 2.695 3.305 8 O -0.956 6.956 9 O -0.954 6.954 10 C -0.741 4.741 11 C -0.145 4.145 12 C -0.008 4.008 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.187 4.187 22 C -0.152 4.152 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.112 0.888 32 H 0.248 0.752 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.835 8.642 17.488 21.846 hybrid contribution -0.042 -0.798 -0.727 1.081 sum -9.878 7.844 16.760 20.976 Atomic orbital electron populations 1.21839 0.95381 1.01710 1.01660 1.21161 0.95325 0.95998 0.98666 1.21593 0.95286 0.96522 1.01916 1.21752 0.96022 1.01181 0.97033 1.20817 0.98873 0.91256 0.85051 1.55792 1.32743 1.70988 1.28001 1.05307 0.73934 0.78153 0.73140 1.93574 1.70428 1.68818 1.62807 1.93565 1.44171 1.78324 1.79307 1.30651 1.10382 1.22911 1.10195 1.21497 0.97003 1.04227 0.91781 1.19060 0.97470 0.88030 0.96190 1.21299 1.31233 0.93188 1.10649 0.92332 1.25020 0.96063 0.95696 0.97618 1.69965 1.45093 0.97996 1.40379 0.86504 0.80185 0.78208 0.82949 1.19594 1.20951 1.20949 1.22217 0.96729 0.96353 1.03369 1.21552 0.95101 1.00561 0.97963 0.92656 0.92708 0.92900 0.91195 0.91846 0.91875 0.90652 0.91073 0.88828 0.75237 0.85428 0.85289 0.91633 0.91621 0.96134 0.96141 0.92972 0.90740 0.90559 0.91755 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.09 -0.66 2.72 -90.62 -0.25 -0.91 16 3 C -0.12 -0.81 5.02 -26.73 -0.13 -0.95 16 4 C -0.12 -0.93 5.63 -26.73 -0.15 -1.08 16 5 C 0.15 1.38 3.02 -67.93 -0.21 1.18 16 6 N -1.12 -11.92 4.63 -4.89 -0.02 -11.95 16 7 S 2.60 38.20 5.44 -107.50 -0.58 37.61 16 8 O -0.97 -17.12 18.08 -57.54 -1.04 -18.16 16 9 O -0.96 -16.97 17.38 -57.54 -1.00 -17.97 16 10 C -0.61 -9.30 5.25 37.16 0.20 -9.11 16 11 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 12 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 13 C -0.53 -14.82 9.11 -34.44 -0.31 -15.13 16 14 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 17 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.15 -1.29 5.61 -26.73 -0.15 -1.44 16 22 C -0.11 -0.94 5.05 -26.73 -0.13 -1.07 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.46 6.51 -51.93 -0.34 0.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 0.93 7.47 -51.93 -0.39 0.54 16 32 H 0.41 3.79 6.78 -34.47 -0.23 3.56 16 33 H 0.13 1.72 6.79 -51.92 -0.35 1.37 16 34 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 40 H 0.07 0.71 5.82 -51.93 -0.30 0.41 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.57 7.44 -51.93 -0.39 0.18 16 LS Contribution 346.72 15.07 5.22 5.22 Total: -1.00 -34.20 346.72 -10.34 -44.54 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.46 Total: -0.83 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: -1.17 Total: -29.27 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.71 Total: -37.74 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -2.04 Total: -36.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 38.20 SS G_CDS: -0.58 Total: 37.61 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.20 -10.34 -44.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068918097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.712 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds