Wall clock time and date at job start Tue Mar 31 2020 06:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 C 1.52998 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47089 * 59.99700 * 4 3 2 6 6 N 1.46498 * 109.47073 * 59.99987 * 5 4 3 7 7 S 1.65602 * 119.99612 * 144.72141 * 6 5 4 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.53003 * 109.47387 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47130 * 179.97438 * 11 10 7 13 13 C 1.50692 * 109.47012 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00231 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99857 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00269 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47223 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47323 * 120.00013 * 17 15 13 20 20 H 1.48497 * 109.47261 * 240.00008 * 17 15 13 21 21 C 1.52998 * 109.46913 * 300.00253 * 5 4 3 22 22 C 1.52996 * 109.47336 * 60.00343 * 21 5 4 23 23 H 1.09003 * 109.46839 * 60.00208 * 1 2 3 24 24 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47138 * 300.00460 * 1 2 3 26 26 H 1.09003 * 109.46839 * 119.99792 * 2 1 3 27 27 H 1.08996 * 109.47329 * 59.99657 * 3 2 1 28 28 H 1.09003 * 109.46933 * 299.99734 * 3 2 1 29 29 H 1.09003 * 109.46839 * 299.99792 * 4 3 2 30 30 H 1.08994 * 109.47488 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46856 * 180.02562 * 5 4 3 32 32 H 0.97001 * 120.00384 * 325.00619 * 6 5 4 33 33 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 34 34 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 35 35 H 1.08994 * 109.46789 * 299.99279 * 11 10 7 36 36 H 1.08993 * 109.47045 * 59.99537 * 11 10 7 37 37 H 1.09003 * 109.47270 * 300.00013 * 12 11 10 38 38 H 1.09000 * 109.46896 * 60.00012 * 12 11 10 39 39 H 0.96993 * 120.00008 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.46713 * 179.97438 * 21 5 4 41 41 H 1.08999 * 109.47174 * 299.99288 * 21 5 4 42 42 H 1.09003 * 109.47419 * 179.97438 * 22 21 5 43 43 H 1.08994 * 109.47433 * 59.99562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0806 0.7209 -1.2483 6 7 3.5927 1.4113 -2.4448 7 16 4.5456 1.4990 -3.7964 8 8 3.7733 2.2524 -4.7213 9 8 5.7917 1.9843 -3.3159 10 6 4.7035 -0.2208 -4.3512 11 6 5.5721 -0.2730 -5.6097 12 6 5.7057 -1.7237 -6.0773 13 6 6.5607 -1.7750 -7.3171 14 1 6.9684 -0.8641 -7.7301 15 6 6.8235 -2.9850 -7.9238 16 7 6.3275 -4.0943 -7.4207 17 14 7.8839 -3.0487 -9.4603 18 1 8.3163 -1.6745 -9.8207 19 1 9.0791 -3.8915 -9.2023 20 1 7.0999 -3.6309 -10.5791 21 6 3.5705 -0.7216 -1.2482 22 6 2.0405 -0.7215 -1.2489 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6768 1.9562 -0.8900 29 1 3.9329 0.9287 0.8909 30 1 3.9334 2.4700 0.0002 31 1 5.1706 0.7205 -1.2475 32 1 2.7133 1.8206 -2.4439 33 1 5.1675 -0.8154 -3.5642 34 1 3.7153 -0.6226 -4.5753 35 1 5.1077 0.3213 -6.3965 36 1 6.5602 0.1288 -5.3860 37 1 6.1703 -2.3178 -5.2903 38 1 4.7176 -2.1258 -6.3009 39 1 6.5120 -4.9454 -7.8477 40 1 3.9338 -1.2354 -2.1382 41 1 3.9335 -1.2353 -0.3580 42 1 1.6771 -1.7492 -1.2493 43 1 1.6776 -0.2079 -2.1391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068918097.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:27 Heat of formation + Delta-G solvation = -140.060486 kcal Electronic energy + Delta-G solvation = -21892.121497 eV Core-core repulsion = 18675.647488 eV Total energy + Delta-G solvation = -3216.474009 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.19581 -38.17220 -37.05398 -36.47839 -35.34910 -34.18035 -31.67726 -31.42521 -29.64075 -26.91884 -25.64416 -23.52613 -22.46669 -22.14161 -20.91896 -19.85671 -18.79783 -18.56325 -17.35321 -17.16626 -16.50216 -16.41563 -15.93660 -15.67281 -15.19723 -14.93580 -14.53369 -14.38685 -14.25099 -14.00152 -13.54324 -13.25516 -13.16836 -13.13070 -13.01593 -12.89966 -12.80492 -12.76614 -12.58694 -12.43519 -12.16514 -12.11320 -12.00947 -11.75463 -11.43884 -11.32500 -11.20191 -10.96292 -10.90320 -10.58176 -10.25587 -8.23106 -6.33899 -0.71852 1.39279 1.40089 1.53304 1.80742 2.39570 2.75931 3.10498 3.23189 3.70882 3.78667 3.84960 3.85630 3.94376 4.18959 4.27146 4.37532 4.38325 4.56924 4.61530 4.66473 4.68032 4.73296 4.82956 4.92554 4.98340 5.04930 5.06269 5.20504 5.22048 5.25950 5.31342 5.42254 5.45488 5.48174 5.52738 5.62993 5.67083 5.79343 6.15441 6.19728 6.81819 7.35452 8.88522 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023911 B = 0.003674 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.712843 B = 7618.353461 C = 8288.204174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.115 4.115 4 C -0.118 4.118 5 C 0.140 3.860 6 N -1.101 6.101 7 S 2.627 3.373 8 O -0.995 6.995 9 O -0.991 6.991 10 C -0.609 4.609 11 C -0.106 4.106 12 C 0.032 3.968 13 C -0.552 4.552 14 H 0.059 0.941 15 C 0.003 3.997 16 N -0.929 5.929 17 Si 0.963 3.037 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.149 4.149 22 C -0.117 4.117 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.422 0.578 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.004 0.996 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.631 8.492 18.770 23.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.153 4.153 4 C -0.157 4.157 5 C 0.033 3.967 6 N -0.863 5.863 7 S 2.723 3.277 8 O -0.986 6.986 9 O -0.981 6.981 10 C -0.740 4.740 11 C -0.145 4.145 12 C -0.006 4.006 13 C -0.590 4.590 14 H 0.077 0.923 15 C -0.195 4.195 16 N -0.569 5.569 17 Si 0.787 3.213 18 H -0.188 1.188 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.188 4.188 22 C -0.155 4.155 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.260 0.740 33 H 0.163 0.837 34 H 0.163 0.837 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.105 9.062 18.398 22.863 hybrid contribution -0.001 -0.950 -0.935 1.333 sum -10.106 8.112 17.463 21.746 Atomic orbital electron populations 1.21833 0.95117 1.01744 1.01865 1.21134 0.95509 0.95918 0.98226 1.21604 0.94756 0.96542 1.02372 1.21759 0.96466 1.00984 0.96499 1.21053 0.98827 0.91837 0.85002 1.55415 1.32798 1.71025 1.27070 1.04234 0.73294 0.77088 0.73127 1.93528 1.70969 1.69573 1.64492 1.93529 1.45969 1.78700 1.79870 1.30617 1.10445 1.24461 1.08461 1.21309 0.98286 1.00813 0.94094 1.18950 0.95742 0.90914 0.95004 1.21771 1.31844 0.93480 1.11919 0.92266 1.25923 0.97345 0.95314 1.00919 1.70072 1.46283 0.98609 1.41937 0.85435 0.78444 0.78529 0.78886 1.18840 1.20182 1.20223 1.22235 0.97126 0.95781 1.03640 1.21582 0.94717 1.00709 0.98454 0.93039 0.92793 0.92124 0.90531 0.90681 0.92178 0.89035 0.91281 0.89259 0.74003 0.83665 0.83700 0.91745 0.91596 0.97761 0.97919 0.92639 0.91754 0.89089 0.91823 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.19 71.98 0.66 -1.05 16 2 C -0.09 -1.08 2.72 -10.79 -0.03 -1.10 16 3 C -0.12 -1.35 5.02 30.59 0.15 -1.19 16 4 C -0.12 -1.54 5.63 30.60 0.17 -1.37 16 5 C 0.14 2.38 3.02 44.99 0.14 2.51 16 6 N -1.10 -22.02 4.63 -169.38 -0.78 -22.80 16 7 S 2.63 75.38 5.44 -56.49 -0.31 75.07 16 8 O -1.00 -34.73 18.08 -127.65 -2.31 -37.04 16 9 O -0.99 -34.27 17.38 -127.65 -2.22 -36.49 16 10 C -0.61 -18.30 5.25 71.98 0.38 -17.92 16 11 C -0.11 -4.32 5.16 30.60 0.16 -4.17 16 12 C 0.03 1.66 4.97 29.85 0.15 1.81 16 13 C -0.55 -31.53 9.11 25.60 0.23 -31.29 16 14 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 15 C 0.00 0.18 5.46 84.66 0.46 0.65 16 16 N -0.93 -55.63 13.29 21.45 0.28 -55.34 16 17 Si 0.96 44.29 29.54 68.60 2.03 46.32 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 C -0.15 -2.34 5.61 30.59 0.17 -2.17 16 22 C -0.12 -1.73 5.05 30.59 0.15 -1.58 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.74 6.51 -2.39 -0.02 0.73 16 29 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.63 7.47 -2.39 -0.02 1.62 16 32 H 0.42 7.10 6.78 -96.74 -0.66 6.45 16 33 H 0.15 3.82 6.79 -2.39 -0.02 3.80 16 34 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 35 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 39 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 40 H 0.06 1.14 5.82 -2.39 -0.01 1.13 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.06 0.96 7.44 -2.39 -0.02 0.94 16 Total: -1.00 -72.66 346.72 -0.19 -72.84 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.32 Total: 14.32 kcal Atomic # 6 Polarization: -59.68 SS G_CDS: 2.80 Total: -56.88 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -0.50 Total: -78.14 kcal Atomic # 8 Polarization: -69.00 SS G_CDS: -4.53 Total: -73.53 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 75.38 SS G_CDS: -0.31 Total: 75.07 kcal Total: -72.66 -0.19 -72.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068918097.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.217 kcal (2) G-P(sol) polarization free energy of solvation -72.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds