Wall clock time and date at job start Tue Mar 31 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.01581 * 2 1 4 4 N 1.46499 * 109.47314 * 58.61158 * 3 2 1 5 5 S 1.65601 * 120.00334 * 165.00007 * 4 3 2 6 6 O 1.42096 * 104.27550 * 308.93049 * 5 4 3 7 7 O 1.42097 * 104.27967 * 181.06892 * 5 4 3 8 8 C 1.81399 * 104.44938 * 64.99936 * 5 4 3 9 9 C 1.53002 * 109.47162 * 180.02562 * 8 5 4 10 10 C 1.53006 * 109.46974 * 179.97438 * 9 8 5 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99861 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00187 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99983 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47000 * 60.00003 * 15 13 11 17 17 H 1.48496 * 109.47325 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47616 * 300.00140 * 15 13 11 19 19 C 1.54265 * 110.07380 * 121.41944 * 2 1 3 20 20 C 1.54887 * 104.19527 * 95.69654 * 19 2 1 21 21 C 1.54889 * 102.74891 * 37.94420 * 20 19 2 22 22 C 1.53877 * 110.03209 * 238.61207 * 2 1 3 23 23 H 1.08998 * 109.47450 * 60.69995 * 1 2 3 24 24 H 1.09001 * 109.47107 * 180.69747 * 1 2 3 25 25 H 1.08998 * 109.47294 * 300.70062 * 1 2 3 26 26 H 1.09000 * 109.47445 * 298.61022 * 3 2 1 27 27 H 1.09005 * 109.47536 * 178.61018 * 3 2 1 28 28 H 0.97004 * 119.99597 * 344.99425 * 4 3 2 29 29 H 1.09004 * 109.47089 * 300.00001 * 8 5 4 30 30 H 1.09004 * 109.47568 * 60.00012 * 8 5 4 31 31 H 1.09000 * 109.46497 * 299.99702 * 9 8 5 32 32 H 1.08996 * 109.46876 * 60.00092 * 9 8 5 33 33 H 1.08993 * 109.46955 * 300.00073 * 10 9 8 34 34 H 1.09000 * 109.47050 * 59.99902 * 10 9 8 35 35 H 0.97002 * 120.00081 * 179.97438 * 14 13 11 36 36 H 1.09008 * 110.48132 * 214.37646 * 19 2 1 37 37 H 1.09003 * 110.48678 * 337.01504 * 19 2 1 38 38 H 1.08989 * 110.75856 * 279.62363 * 20 19 2 39 39 H 1.09001 * 110.75383 * 156.25190 * 20 19 2 40 40 H 1.09003 * 110.48364 * 203.37901 * 21 20 19 41 41 H 1.09004 * 110.60305 * 80.79145 * 21 20 19 42 42 H 1.09003 * 110.03050 * 359.94824 * 22 2 1 43 43 H 1.09002 * 110.03623 * 121.33057 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 7 1.5449 2.1427 1.1791 5 16 2.2280 3.5776 1.6446 6 8 3.6210 3.3017 1.6973 7 8 1.5092 3.9448 2.8140 8 6 1.8560 4.7184 0.2843 9 6 2.4427 6.0960 0.5990 10 6 2.1295 7.0581 -0.5487 11 6 2.7068 8.4151 -0.2384 12 1 3.2431 8.5754 0.6853 13 6 2.5495 9.4522 -1.1331 14 7 1.8961 9.2571 -2.2575 15 14 3.2645 11.1345 -0.7481 16 1 4.7362 11.0213 -0.5852 17 1 2.9607 12.0682 -1.8620 18 1 2.6657 11.6511 0.5088 19 6 2.0595 -0.7553 1.2365 20 6 2.3298 -2.1897 0.7184 21 6 2.8885 -1.9396 -0.7044 22 6 2.0571 -0.7530 -1.2341 23 1 -0.3634 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3634 0.5247 0.8836 26 1 1.7157 1.9474 -0.9022 27 1 3.1434 1.4274 0.0249 28 1 0.8078 1.7690 1.6870 29 1 2.2952 4.3391 -0.6385 30 1 0.7758 4.8018 0.1650 31 1 2.0039 6.4755 1.5218 32 1 3.5230 6.0123 0.7179 33 1 2.5686 6.6783 -1.4712 34 1 1.0493 7.1418 -0.6681 35 1 1.7851 9.9869 -2.8869 36 1 2.9820 -0.2992 1.5959 37 1 1.3075 -0.7701 2.0255 38 1 1.4053 -2.7653 0.6747 39 1 3.0700 -2.6922 1.3411 40 1 2.7415 -2.8186 -1.3320 41 1 3.9452 -1.6756 -0.6607 42 1 1.2228 -1.1191 -1.8325 43 1 2.6853 -0.0940 -1.8335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068918191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:17 Heat of formation + Delta-G solvation = -113.690713 kcal Electronic energy + Delta-G solvation = -21450.128251 eV Core-core repulsion = 18234.797721 eV Total energy + Delta-G solvation = -3215.330530 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.53907 -36.85411 -35.72896 -34.91054 -34.66041 -32.18253 -31.02112 -29.03110 -27.79667 -26.75901 -24.20370 -23.71475 -21.05434 -20.60487 -19.22995 -19.02597 -17.43857 -16.78408 -16.46415 -15.72346 -15.58125 -15.21003 -14.69300 -14.54081 -14.42872 -14.01493 -13.89029 -13.34372 -12.75287 -12.57230 -12.30836 -12.16190 -12.02216 -11.91749 -11.77852 -11.74261 -11.38744 -11.30871 -11.22141 -10.99087 -10.89994 -10.88253 -10.86485 -10.76603 -10.69847 -10.42523 -9.94322 -9.65052 -9.30861 -9.07209 -8.40363 -6.05490 -4.08616 0.50348 2.89822 3.32347 3.36124 3.39416 3.96976 4.20932 4.25302 4.37919 4.42721 4.47669 4.89600 4.97844 5.04120 5.08267 5.11520 5.20861 5.24431 5.30806 5.34595 5.40589 5.45278 5.53759 5.59828 5.67904 5.73105 5.75706 5.84593 5.90549 5.93042 6.07852 6.10423 6.14367 6.27794 6.45841 6.87522 6.95084 7.56949 7.67220 7.92470 8.33107 8.97444 9.56064 11.05725 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029292 B = 0.003145 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.664223 B = 8900.241029 C = 9297.610534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C 0.124 3.876 4 N -1.123 6.123 5 S 2.601 3.399 6 O -0.963 6.963 7 O -0.965 6.965 8 C -0.609 4.609 9 C -0.106 4.106 10 C 0.031 3.969 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.117 4.117 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.116 4.116 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.413 0.587 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 -23.443 2.536 23.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.002 4.002 4 N -0.882 5.882 5 S 2.697 3.303 6 O -0.953 6.953 7 O -0.956 6.956 8 C -0.741 4.741 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.722 3.278 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.155 4.155 20 C -0.162 4.162 21 C -0.163 4.163 22 C -0.154 4.154 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.248 0.752 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.888 -23.155 3.085 23.436 hybrid contribution -0.352 0.934 -0.408 1.078 sum -2.240 -22.222 2.677 22.494 Atomic orbital electron populations 1.21924 0.93899 1.01827 1.02123 1.21367 0.96050 0.93796 0.96024 1.21492 0.99314 0.92281 0.87105 1.55716 1.51213 1.40384 1.40925 1.05248 0.74392 0.74277 0.76389 1.93561 1.31899 1.83079 1.86758 1.93573 1.73889 1.82909 1.45198 1.30543 1.11463 1.13469 1.18602 1.21499 0.99842 0.90378 1.02828 1.19054 0.97311 0.92502 0.91857 1.21224 1.35429 0.95079 1.04808 0.92418 1.25015 0.95217 0.99113 0.95001 1.69944 1.41487 1.32591 1.09452 0.86613 0.79676 0.83587 0.77898 1.20111 1.21245 1.20114 1.22505 1.01462 0.94940 0.96559 1.22488 1.00638 0.96827 0.96285 1.22358 0.99737 0.97858 0.96320 1.22242 0.99751 0.96896 0.96528 0.92168 0.92345 0.92473 0.91615 0.90053 0.75199 0.85577 0.85333 0.91603 0.91588 0.96141 0.96149 0.92841 0.90855 0.91546 0.91679 0.91688 0.91820 0.91465 0.91288 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 7.97 37.16 0.30 -0.69 16 2 C -0.07 -0.55 0.68 -153.39 -0.10 -0.66 16 3 C 0.12 1.17 4.67 -4.04 -0.02 1.15 16 4 N -1.12 -11.91 5.45 -10.61 -0.06 -11.97 16 5 S 2.60 37.98 5.46 -107.50 -0.59 37.40 16 6 O -0.96 -16.88 17.50 -57.54 -1.01 -17.88 16 7 O -0.97 -17.00 18.08 -57.54 -1.04 -18.04 16 8 C -0.61 -9.34 6.07 37.16 0.23 -9.11 16 9 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 10 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 11 C -0.53 -14.92 9.11 -34.44 -0.31 -15.24 16 12 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 15 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.12 -0.95 5.58 -25.07 -0.14 -1.09 16 20 C -0.12 -0.87 6.91 -24.74 -0.17 -1.04 16 21 C -0.13 -0.85 6.83 -25.07 -0.17 -1.02 16 22 C -0.12 -0.82 6.11 -25.61 -0.16 -0.98 16 23 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.39 6.55 -51.93 -0.34 0.05 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.82 7.67 -51.93 -0.40 0.42 16 28 H 0.41 3.74 6.95 -34.47 -0.24 3.50 16 29 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 30 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.07 0.69 7.84 -51.92 -0.41 0.28 16 37 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.44 7.67 -51.93 -0.40 0.05 16 43 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -34.35 354.23 -10.19 -44.54 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.63 Total: -1.33 kcal Atomic # 6 Polarization: -27.83 SS G_CDS: -0.93 Total: -28.76 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.68 Total: -37.89 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -2.05 Total: -35.93 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 37.98 SS G_CDS: -0.59 Total: 37.40 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.35 -10.19 -44.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068918191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.149 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds