Wall clock time and date at job start Tue Mar 31 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 110.01581 * 2 1 4 4 N 1.46499 * 109.47314 * 58.61158 * 3 2 1 5 5 S 1.65601 * 120.00334 * 165.00007 * 4 3 2 6 6 O 1.42096 * 104.27550 * 308.93049 * 5 4 3 7 7 O 1.42097 * 104.27967 * 181.06892 * 5 4 3 8 8 C 1.81399 * 104.44938 * 64.99936 * 5 4 3 9 9 C 1.53002 * 109.47162 * 180.02562 * 8 5 4 10 10 C 1.53006 * 109.46974 * 179.97438 * 9 8 5 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99861 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00187 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99983 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47000 * 60.00003 * 15 13 11 17 17 H 1.48496 * 109.47325 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47616 * 300.00140 * 15 13 11 19 19 C 1.54265 * 110.07380 * 121.41944 * 2 1 3 20 20 C 1.54887 * 104.19527 * 95.69654 * 19 2 1 21 21 C 1.54889 * 102.74891 * 37.94420 * 20 19 2 22 22 C 1.53877 * 110.03209 * 238.61207 * 2 1 3 23 23 H 1.08998 * 109.47450 * 60.69995 * 1 2 3 24 24 H 1.09001 * 109.47107 * 180.69747 * 1 2 3 25 25 H 1.08998 * 109.47294 * 300.70062 * 1 2 3 26 26 H 1.09000 * 109.47445 * 298.61022 * 3 2 1 27 27 H 1.09005 * 109.47536 * 178.61018 * 3 2 1 28 28 H 0.97004 * 119.99597 * 344.99425 * 4 3 2 29 29 H 1.09004 * 109.47089 * 300.00001 * 8 5 4 30 30 H 1.09004 * 109.47568 * 60.00012 * 8 5 4 31 31 H 1.09000 * 109.46497 * 299.99702 * 9 8 5 32 32 H 1.08996 * 109.46876 * 60.00092 * 9 8 5 33 33 H 1.08993 * 109.46955 * 300.00073 * 10 9 8 34 34 H 1.09000 * 109.47050 * 59.99902 * 10 9 8 35 35 H 0.97002 * 120.00081 * 179.97438 * 14 13 11 36 36 H 1.09008 * 110.48132 * 214.37646 * 19 2 1 37 37 H 1.09003 * 110.48678 * 337.01504 * 19 2 1 38 38 H 1.08989 * 110.75856 * 279.62363 * 20 19 2 39 39 H 1.09001 * 110.75383 * 156.25190 * 20 19 2 40 40 H 1.09003 * 110.48364 * 203.37901 * 21 20 19 41 41 H 1.09004 * 110.60305 * 80.79145 * 21 20 19 42 42 H 1.09003 * 110.03050 * 359.94824 * 22 2 1 43 43 H 1.09002 * 110.03623 * 121.33057 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0536 1.4376 0.0000 4 7 1.5449 2.1427 1.1791 5 16 2.2280 3.5776 1.6446 6 8 3.6210 3.3017 1.6973 7 8 1.5092 3.9448 2.8140 8 6 1.8560 4.7184 0.2843 9 6 2.4427 6.0960 0.5990 10 6 2.1295 7.0581 -0.5487 11 6 2.7068 8.4151 -0.2384 12 1 3.2431 8.5754 0.6853 13 6 2.5495 9.4522 -1.1331 14 7 1.8961 9.2571 -2.2575 15 14 3.2645 11.1345 -0.7481 16 1 4.7362 11.0213 -0.5852 17 1 2.9607 12.0682 -1.8620 18 1 2.6657 11.6511 0.5088 19 6 2.0595 -0.7553 1.2365 20 6 2.3298 -2.1897 0.7184 21 6 2.8885 -1.9396 -0.7044 22 6 2.0571 -0.7530 -1.2341 23 1 -0.3634 0.5029 -0.8962 24 1 -0.3633 -1.0276 0.0125 25 1 -0.3634 0.5247 0.8836 26 1 1.7157 1.9474 -0.9022 27 1 3.1434 1.4274 0.0249 28 1 0.8078 1.7690 1.6870 29 1 2.2952 4.3391 -0.6385 30 1 0.7758 4.8018 0.1650 31 1 2.0039 6.4755 1.5218 32 1 3.5230 6.0123 0.7179 33 1 2.5686 6.6783 -1.4712 34 1 1.0493 7.1418 -0.6681 35 1 1.7851 9.9869 -2.8869 36 1 2.9820 -0.2992 1.5959 37 1 1.3075 -0.7701 2.0255 38 1 1.4053 -2.7653 0.6747 39 1 3.0700 -2.6922 1.3411 40 1 2.7415 -2.8186 -1.3320 41 1 3.9452 -1.6756 -0.6607 42 1 1.2228 -1.1191 -1.8325 43 1 2.6853 -0.0940 -1.8335 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068918191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:17 Heat of formation + Delta-G solvation = -136.700893 kcal Electronic energy + Delta-G solvation = -21451.126048 eV Core-core repulsion = 18234.797721 eV Total energy + Delta-G solvation = -3216.328326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16387 -38.16790 -37.04812 -36.46710 -35.72116 -34.16624 -31.67471 -29.68497 -29.56673 -27.42283 -25.62112 -24.86972 -22.44558 -21.54764 -20.29881 -19.78923 -18.68513 -18.43989 -17.60861 -17.13316 -16.59639 -16.45563 -16.02638 -15.72869 -15.31647 -15.05812 -14.49566 -14.47444 -14.11839 -13.97128 -13.52384 -13.32912 -13.21228 -13.14056 -13.08638 -12.92858 -12.73449 -12.71814 -12.64613 -12.15786 -11.93059 -11.87738 -11.75094 -11.58403 -11.51618 -11.41044 -11.36035 -11.29198 -11.08424 -10.57498 -10.29729 -8.23037 -6.34175 -0.71766 1.39930 1.42466 1.50421 1.81937 2.39578 2.76761 3.10432 3.24060 3.61397 3.65466 3.77124 3.79367 3.94742 4.28731 4.36100 4.39410 4.46668 4.51966 4.54309 4.65640 4.67736 4.80294 4.86092 4.90682 4.96651 5.04319 5.05814 5.09449 5.13542 5.21659 5.29567 5.33828 5.44719 5.49505 5.54748 5.55865 5.62646 5.78965 6.13313 6.19384 6.81263 7.35159 8.88267 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029292 B = 0.003145 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.664223 B = 8900.241029 C = 9297.610534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C 0.113 3.887 4 N -1.107 6.107 5 S 2.631 3.369 6 O -0.991 6.991 7 O -0.994 6.994 8 C -0.609 4.609 9 C -0.107 4.107 10 C 0.032 3.968 11 C -0.555 4.555 12 H 0.060 0.940 13 C 0.003 3.997 14 N -0.930 5.930 15 Si 0.963 3.037 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.268 1.268 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.116 4.116 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.423 0.577 29 H 0.145 0.855 30 H 0.146 0.854 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.004 0.996 34 H 0.003 0.997 35 H 0.265 0.735 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.759 -24.269 2.511 24.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.069 4.069 3 C -0.012 4.012 4 N -0.869 5.869 5 S 2.726 3.274 6 O -0.981 6.981 7 O -0.985 6.985 8 C -0.740 4.740 9 C -0.146 4.146 10 C -0.007 4.007 11 C -0.593 4.593 12 H 0.078 0.922 13 C -0.195 4.195 14 N -0.569 5.569 15 Si 0.787 3.213 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.164 4.164 22 C -0.155 4.155 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.022 0.978 34 H 0.021 0.979 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.188 -23.983 3.071 24.278 hybrid contribution -0.275 1.113 -0.427 1.223 sum -2.463 -22.870 2.644 23.154 Atomic orbital electron populations 1.21939 0.93020 1.02527 1.02326 1.21364 0.96699 0.92566 0.96293 1.21759 0.99095 0.93490 0.86891 1.55305 1.51349 1.38701 1.41579 1.04141 0.73429 0.74474 0.75340 1.93526 1.33923 1.83669 1.87014 1.93529 1.74319 1.83830 1.46784 1.30498 1.12510 1.10906 1.20065 1.21317 1.00320 0.92195 1.00806 1.18952 0.95749 0.92901 0.93049 1.21725 1.35718 0.96754 1.05070 0.92204 1.25927 0.95506 1.03278 0.94781 1.70058 1.42568 1.33928 1.10387 0.85539 0.79165 0.78600 0.78017 1.19227 1.20566 1.19251 1.22530 1.00782 0.95727 0.96898 1.22485 1.01110 0.96137 0.96262 1.22373 0.99341 0.98211 0.96439 1.22266 1.00125 0.96856 0.96215 0.91840 0.91454 0.92399 0.89969 0.90856 0.73919 0.83685 0.83569 0.91659 0.91584 0.97804 0.97904 0.92600 0.92564 0.91176 0.90767 0.91638 0.90794 0.92102 0.90277 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 7.97 71.98 0.57 -1.07 16 2 C -0.07 -0.93 0.68 -51.46 -0.03 -0.97 16 3 C 0.11 1.95 4.67 86.38 0.40 2.35 16 4 N -1.11 -21.81 5.45 -187.49 -1.02 -22.83 16 5 S 2.63 74.48 5.46 -56.49 -0.31 74.18 16 6 O -0.99 -34.25 17.50 -127.65 -2.23 -36.48 16 7 O -0.99 -34.28 18.08 -127.65 -2.31 -36.59 16 8 C -0.61 -18.05 6.07 71.98 0.44 -17.62 16 9 C -0.11 -4.37 5.16 30.60 0.16 -4.21 16 10 C 0.03 1.64 4.97 29.85 0.15 1.79 16 11 C -0.55 -31.70 9.11 25.60 0.23 -31.47 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C 0.00 0.19 5.46 84.65 0.46 0.66 16 14 N -0.93 -55.79 13.29 21.44 0.28 -55.51 16 15 Si 0.96 44.26 29.54 68.60 2.03 46.28 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 C -0.12 -1.81 5.58 31.67 0.18 -1.64 16 20 C -0.12 -1.50 6.91 31.88 0.22 -1.28 16 21 C -0.13 -1.51 6.83 31.67 0.22 -1.30 16 22 C -0.12 -1.42 6.11 31.32 0.19 -1.23 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.66 6.55 -2.39 -0.02 0.65 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.41 7.67 -2.38 -0.02 1.39 16 28 H 0.42 6.92 6.95 -96.74 -0.67 6.24 16 29 H 0.14 3.72 8.14 -2.39 -0.02 3.70 16 30 H 0.15 3.81 8.14 -2.39 -0.02 3.79 16 31 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.06 1.03 7.84 -2.38 -0.02 1.01 16 37 H 0.07 0.97 7.84 -2.39 -0.02 0.95 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.08 0.82 7.67 -2.39 -0.02 0.80 16 43 H 0.07 0.86 7.67 -2.39 -0.02 0.84 16 Total: -1.00 -73.10 354.23 -0.08 -73.18 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.29 Total: 13.76 kcal Atomic # 6 Polarization: -59.18 SS G_CDS: 3.18 Total: -55.99 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -0.74 Total: -78.34 kcal Atomic # 8 Polarization: -68.52 SS G_CDS: -4.54 Total: -73.07 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 16 Polarization: 74.48 SS G_CDS: -0.31 Total: 74.18 kcal Total: -73.10 -0.08 -73.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068918191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.521 kcal (2) G-P(sol) polarization free energy of solvation -73.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds