Wall clock time and date at job start Tue Mar 31 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38279 * 119.93222 * 2 1 4 4 C 1.38109 * 120.07089 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.92896 * 0.02562 * 4 3 2 6 6 N 1.39922 * 120.07115 * 180.02562 * 5 4 3 7 7 C 1.46505 * 119.99989 * 7.90560 * 6 5 4 8 8 C 1.50700 * 109.46790 * 270.00006 * 7 6 5 9 9 H 1.08000 * 120.00423 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99954 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00121 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00134 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47167 * 59.99984 * 12 10 8 14 14 H 1.48504 * 109.47157 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46922 * 299.99769 * 12 10 8 16 16 C 1.34774 * 120.00327 * 187.90521 * 6 5 4 17 17 O 1.21286 * 119.99684 * 6.26126 * 16 6 5 18 18 C 1.50703 * 120.00419 * 186.26422 * 16 6 5 19 19 H 1.09006 * 110.27438 * 49.15958 * 18 16 6 20 20 C 1.54946 * 110.39158 * 287.01650 * 18 16 6 21 21 C 1.55450 * 100.98818 * 204.64609 * 20 18 16 22 22 C 1.54386 * 102.18605 * 34.03810 * 21 20 18 23 23 O 1.43239 * 107.66564 * 338.74023 * 22 21 20 24 24 C 1.38870 * 119.86026 * 0.27135 * 5 4 3 25 25 C 1.38119 * 119.92641 * 359.47669 * 24 5 4 26 26 H 1.09000 * 109.46809 * 89.99871 * 1 2 3 27 27 H 1.08997 * 109.47689 * 209.99943 * 1 2 3 28 28 H 1.08999 * 109.46887 * 330.00528 * 1 2 3 29 29 H 1.07996 * 119.96312 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.03653 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.47057 * 29.99756 * 7 6 5 32 32 H 1.08994 * 109.47524 * 150.00538 * 7 6 5 33 33 H 0.97004 * 120.00022 * 179.97438 * 11 10 8 34 34 H 1.09004 * 111.12683 * 322.51364 * 20 18 16 35 35 H 1.08998 * 111.12645 * 86.63635 * 20 18 16 36 36 H 1.09007 * 110.83299 * 275.89289 * 21 20 18 37 37 H 1.08999 * 110.92438 * 152.22965 * 21 20 18 38 38 H 1.09001 * 109.82922 * 219.18581 * 22 21 20 39 39 H 1.08995 * 109.82916 * 98.30048 * 22 21 20 40 40 H 1.08001 * 120.04034 * 179.72389 * 24 5 4 41 41 H 1.08001 * 119.96354 * 180.24944 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2017 0.0005 5 6 4.2739 -0.0002 0.0005 6 7 5.6731 -0.0003 0.0016 7 6 6.4056 1.2563 0.1773 8 6 6.6578 1.8832 -1.1698 9 1 6.3072 1.3947 -2.0669 10 6 7.3352 3.0809 -1.2568 11 7 7.7609 3.6765 -0.1643 12 14 7.6473 3.8583 -2.9265 13 1 6.3500 4.1304 -3.5961 14 1 8.3898 5.1320 -2.7485 15 1 8.4506 2.9302 -3.7623 16 6 6.3471 -1.1563 -0.1589 17 8 5.7463 -2.1777 -0.4173 18 6 7.8473 -1.1799 -0.0172 19 1 8.1478 -0.6775 0.9022 20 6 8.5159 -0.5057 -1.2417 21 6 9.9136 -1.1859 -1.2280 22 6 9.5810 -2.6037 -0.7154 23 8 8.3276 -2.5336 -0.0256 24 6 3.5781 -1.2019 -0.0057 25 6 2.1969 -1.1985 -0.0010 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.6553 2.1326 -0.0004 30 1 4.1165 2.1380 0.0010 31 1 5.8161 1.9378 0.7905 32 1 7.3576 1.0564 0.6688 33 1 8.2379 4.5190 -0.2256 34 1 7.9768 -0.7368 -2.1605 35 1 8.6007 0.5716 -1.0993 36 1 10.5875 -0.6733 -0.5414 37 1 10.3371 -1.2256 -2.2315 38 1 10.3604 -2.9423 -0.0326 39 1 9.5020 -3.2920 -1.5568 40 1 4.1162 -2.1383 -0.0102 41 1 1.6551 -2.1328 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072678920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:56 Heat of formation + Delta-G solvation = -46.136767 kcal Electronic energy + Delta-G solvation = -23626.553489 eV Core-core repulsion = 20278.708367 eV Total energy + Delta-G solvation = -3347.845122 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.43612 -38.88914 -37.54833 -35.45884 -32.96508 -31.90210 -31.37801 -30.33441 -29.29717 -27.62631 -25.95067 -23.53515 -23.10911 -21.83321 -21.29796 -20.78491 -19.00742 -17.27192 -16.79452 -16.43868 -15.90697 -15.45621 -14.87275 -14.68172 -14.48403 -14.32254 -13.79487 -13.50837 -13.31863 -12.98546 -12.91925 -12.78314 -12.52543 -11.91873 -11.80857 -11.73027 -11.58535 -11.30941 -11.16520 -11.02400 -10.91222 -10.73286 -10.53218 -10.47214 -10.31248 -10.07161 -9.45478 -9.12701 -8.77183 -8.51989 -8.32522 -7.10970 -6.33658 -4.41860 1.83267 2.02127 3.14398 3.15356 3.21093 3.24831 3.37862 4.18513 4.33224 4.47189 4.77769 4.98842 5.07929 5.17138 5.31222 5.32509 5.40313 5.48038 5.60831 5.64075 5.71991 5.82398 5.90582 5.98709 6.00410 6.08601 6.12733 6.21510 6.28625 6.49749 6.54051 6.69354 6.77127 6.86989 6.96932 7.03269 7.17193 7.23738 7.31319 7.59154 7.81025 7.83182 8.07266 8.61158 8.76495 9.24485 10.71687 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.007124 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.108671 B = 3929.659706 C = 5909.456148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.131 4.131 3 C -0.103 4.103 4 C -0.140 4.140 5 C 0.167 3.833 6 N -0.534 5.534 7 C 0.225 3.775 8 C -0.538 4.538 9 H 0.064 0.936 10 C 0.070 3.930 11 N -0.887 5.887 12 Si 0.895 3.105 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.274 1.274 16 C 0.519 3.481 17 O -0.527 6.527 18 C 0.073 3.927 19 H 0.096 0.904 20 C -0.140 4.140 21 C -0.157 4.157 22 C 0.051 3.949 23 O -0.364 6.364 24 C -0.171 4.171 25 C -0.106 4.106 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.139 0.861 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.269 0.731 34 H 0.076 0.924 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.170 0.830 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -5.190 0.484 5.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.132 4.132 3 C -0.122 4.122 4 C -0.160 4.160 5 C 0.072 3.928 6 N -0.254 5.254 7 C 0.107 3.893 8 C -0.576 4.576 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.524 5.524 12 Si 0.722 3.278 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.309 3.691 17 O -0.405 6.405 18 C 0.013 3.987 19 H 0.114 0.886 20 C -0.177 4.177 21 C -0.194 4.194 22 C -0.026 4.026 23 O -0.282 6.282 24 C -0.190 4.190 25 C -0.125 4.125 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.157 0.843 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.187 0.813 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.297 -5.721 0.525 6.188 hybrid contribution 0.400 0.935 -1.025 1.444 sum -1.897 -4.787 -0.500 5.173 Atomic orbital electron populations 1.20659 0.92080 1.01847 1.01465 1.19771 0.95427 0.93495 1.04553 1.20727 0.93474 0.97041 1.00961 1.21094 0.94000 0.97695 1.03252 1.18025 0.82638 0.94196 0.97983 1.45922 1.04076 1.09957 1.65471 1.19769 0.92174 0.79041 0.98353 1.21328 1.37359 1.06486 0.92415 0.91780 1.24892 0.95147 0.96418 0.96984 1.69907 1.37331 1.17710 1.27449 0.86590 0.78755 0.78705 0.83778 1.19945 1.21032 1.19888 1.20485 0.89538 0.82714 0.76400 1.90345 1.68600 1.34104 1.47472 1.22743 0.91162 0.83907 1.00884 0.88617 1.23459 0.93405 1.04125 0.96726 1.23192 0.98576 0.95336 1.02334 1.23138 0.85896 0.97430 0.96113 1.88442 1.36794 1.26208 1.76802 1.22437 0.94311 0.99830 1.02447 1.20868 0.93885 0.96830 1.00918 0.92069 0.92291 0.92217 0.86529 0.84297 0.93478 0.93595 0.92171 0.90542 0.85457 0.90375 0.90122 0.91609 0.91626 0.81304 0.86801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.01 36.01 0.36 -0.90 16 2 C -0.13 -2.11 5.88 -104.59 -0.62 -2.72 16 3 C -0.10 -1.76 9.69 -39.61 -0.38 -2.15 16 4 C -0.14 -2.77 9.14 -39.39 -0.36 -3.13 16 5 C 0.17 3.53 6.48 -83.69 -0.54 2.98 16 6 N -0.53 -11.53 2.68 -114.74 -0.31 -11.83 16 7 C 0.23 5.05 4.03 -5.19 -0.02 5.03 16 8 C -0.54 -12.83 6.65 -34.44 -0.23 -13.05 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.07 1.69 5.45 -17.82 -0.10 1.60 16 11 N -0.89 -22.49 13.29 55.43 0.74 -21.75 16 12 Si 0.89 19.35 29.54 -169.99 -5.02 14.33 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 C 0.52 11.16 6.95 -10.99 -0.08 11.09 16 17 O -0.53 -12.21 13.09 -13.63 -0.18 -12.39 16 18 C 0.07 1.39 2.92 -26.85 -0.08 1.31 16 19 H 0.10 1.73 7.07 -51.93 -0.37 1.36 16 20 C -0.14 -2.48 5.33 -24.40 -0.13 -2.61 16 21 C -0.16 -2.19 7.03 -24.70 -0.17 -2.37 16 22 C 0.05 0.73 7.79 37.88 0.30 1.03 16 23 O -0.36 -6.80 10.62 -54.41 -0.58 -7.38 16 24 C -0.17 -3.42 8.97 -39.39 -0.35 -3.77 16 25 C -0.11 -1.82 9.69 -39.61 -0.38 -2.21 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 28 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.14 2.88 6.27 -52.49 -0.33 2.55 16 31 H 0.05 1.11 6.57 -51.93 -0.34 0.77 16 32 H 0.05 1.03 5.79 -51.93 -0.30 0.73 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 35 H 0.13 2.51 5.67 -51.93 -0.29 2.21 16 36 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.17 3.61 4.73 -55.11 -0.26 3.35 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 329.82 15.07 4.97 4.97 Total: -1.00 -27.31 329.82 -8.82 -36.13 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.66 Total: 7.80 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.79 Total: -9.88 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.43 Total: -33.59 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.76 Total: -19.77 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.31 -8.82 -36.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.006 kcal (2) G-P(sol) polarization free energy of solvation -27.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds