Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38279 * 119.93222 * 2 1 4 4 C 1.38109 * 120.07089 * 179.97438 * 3 2 1 5 5 C 1.38875 * 119.92896 * 0.02562 * 4 3 2 6 6 N 1.39922 * 120.07115 * 180.02562 * 5 4 3 7 7 C 1.46505 * 119.99989 * 7.90560 * 6 5 4 8 8 C 1.50700 * 109.46790 * 270.00006 * 7 6 5 9 9 H 1.08000 * 120.00423 * 0.02562 * 8 7 6 10 10 C 1.37876 * 119.99954 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00121 * 359.97438 * 10 8 7 12 12 Si 1.86805 * 120.00134 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47167 * 59.99984 * 12 10 8 14 14 H 1.48504 * 109.47157 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46922 * 299.99769 * 12 10 8 16 16 C 1.34774 * 120.00327 * 187.90521 * 6 5 4 17 17 O 1.21286 * 119.99684 * 6.26126 * 16 6 5 18 18 C 1.50703 * 120.00419 * 186.26422 * 16 6 5 19 19 H 1.09006 * 110.27438 * 49.15958 * 18 16 6 20 20 C 1.54946 * 110.39158 * 287.01650 * 18 16 6 21 21 C 1.55450 * 100.98818 * 204.64609 * 20 18 16 22 22 C 1.54386 * 102.18605 * 34.03810 * 21 20 18 23 23 O 1.43239 * 107.66564 * 338.74023 * 22 21 20 24 24 C 1.38870 * 119.86026 * 0.27135 * 5 4 3 25 25 C 1.38119 * 119.92641 * 359.47669 * 24 5 4 26 26 H 1.09000 * 109.46809 * 89.99871 * 1 2 3 27 27 H 1.08997 * 109.47689 * 209.99943 * 1 2 3 28 28 H 1.08999 * 109.46887 * 330.00528 * 1 2 3 29 29 H 1.07996 * 119.96312 * 359.97438 * 3 2 1 30 30 H 1.08001 * 120.03653 * 180.02562 * 4 3 2 31 31 H 1.08999 * 109.47057 * 29.99756 * 7 6 5 32 32 H 1.08994 * 109.47524 * 150.00538 * 7 6 5 33 33 H 0.97004 * 120.00022 * 179.97438 * 11 10 8 34 34 H 1.09004 * 111.12683 * 322.51364 * 20 18 16 35 35 H 1.08998 * 111.12645 * 86.63635 * 20 18 16 36 36 H 1.09007 * 110.83299 * 275.89289 * 21 20 18 37 37 H 1.08999 * 110.92438 * 152.22965 * 21 20 18 38 38 H 1.09001 * 109.82922 * 219.18581 * 22 21 20 39 39 H 1.08995 * 109.82916 * 98.30048 * 22 21 20 40 40 H 1.08001 * 120.04034 * 179.72389 * 24 5 4 41 41 H 1.08001 * 119.96354 * 180.24944 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.1983 0.0000 4 6 3.5781 1.2017 0.0005 5 6 4.2739 -0.0002 0.0005 6 7 5.6731 -0.0003 0.0016 7 6 6.4056 1.2563 0.1773 8 6 6.6578 1.8832 -1.1698 9 1 6.3072 1.3947 -2.0669 10 6 7.3352 3.0809 -1.2568 11 7 7.7609 3.6765 -0.1643 12 14 7.6473 3.8583 -2.9265 13 1 6.3500 4.1304 -3.5961 14 1 8.3898 5.1320 -2.7485 15 1 8.4506 2.9302 -3.7623 16 6 6.3471 -1.1563 -0.1589 17 8 5.7463 -2.1777 -0.4173 18 6 7.8473 -1.1799 -0.0172 19 1 8.1478 -0.6775 0.9022 20 6 8.5159 -0.5057 -1.2417 21 6 9.9136 -1.1859 -1.2280 22 6 9.5810 -2.6037 -0.7154 23 8 8.3276 -2.5336 -0.0256 24 6 3.5781 -1.2019 -0.0057 25 6 2.1969 -1.1985 -0.0010 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5137 29 1 1.6553 2.1326 -0.0004 30 1 4.1165 2.1380 0.0010 31 1 5.8161 1.9378 0.7905 32 1 7.3576 1.0564 0.6688 33 1 8.2379 4.5190 -0.2256 34 1 7.9768 -0.7368 -2.1605 35 1 8.6007 0.5716 -1.0993 36 1 10.5875 -0.6733 -0.5414 37 1 10.3371 -1.2256 -2.2315 38 1 10.3604 -2.9423 -0.0326 39 1 9.5020 -3.2920 -1.5568 40 1 4.1162 -2.1383 -0.0102 41 1 1.6551 -2.1328 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072678920.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = -59.477980 kcal Electronic energy + Delta-G solvation = -23627.132008 eV Core-core repulsion = 20278.708367 eV Total energy + Delta-G solvation = -3348.423641 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.01912 -40.28254 -39.02152 -37.15280 -34.76042 -33.33011 -32.71491 -31.79393 -30.62291 -29.42326 -27.25491 -25.31908 -24.50003 -23.34580 -22.56863 -22.19976 -20.57757 -18.84764 -18.57446 -18.13207 -17.32963 -16.86999 -16.49618 -16.23113 -15.93948 -15.85614 -15.20721 -14.84724 -14.57394 -14.41904 -14.40203 -14.32516 -14.10232 -13.45881 -13.26821 -13.05070 -12.95474 -12.76327 -12.65291 -12.62285 -12.40943 -12.21830 -12.04149 -11.93897 -11.86315 -11.71665 -10.81639 -10.75610 -10.64332 -10.12870 -9.79020 -8.68224 -8.21395 -6.36156 0.35359 0.55528 1.41277 1.43757 1.49208 1.57160 1.81991 2.38714 2.91086 2.98991 3.08353 3.35691 3.66878 3.90997 4.03085 4.11272 4.13153 4.13405 4.28317 4.35616 4.48098 4.53722 4.61859 4.76558 4.81205 4.88745 4.92771 4.94645 4.96188 5.07909 5.19677 5.21013 5.24656 5.26303 5.45586 5.54455 5.65092 5.74374 5.81374 5.91525 5.94594 6.29432 6.39065 6.71709 7.07292 7.32748 8.81933 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011581 B = 0.007124 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.108671 B = 3929.659706 C = 5909.456148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.121 4.121 3 C -0.102 4.102 4 C -0.155 4.155 5 C 0.132 3.868 6 N -0.537 5.537 7 C 0.241 3.759 8 C -0.533 4.533 9 H 0.048 0.952 10 C 0.037 3.963 11 N -0.911 5.911 12 Si 0.946 3.054 13 H -0.279 1.279 14 H -0.280 1.280 15 H -0.267 1.267 16 C 0.509 3.491 17 O -0.551 6.551 18 C 0.077 3.923 19 H 0.101 0.899 20 C -0.137 4.137 21 C -0.144 4.144 22 C 0.044 3.956 23 O -0.387 6.387 24 C -0.187 4.187 25 C -0.106 4.106 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.145 0.855 30 H 0.121 0.879 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.271 0.729 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.153 0.847 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.830 -5.331 -0.088 6.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.121 4.121 4 C -0.175 4.175 5 C 0.038 3.962 6 N -0.258 5.258 7 C 0.122 3.878 8 C -0.572 4.572 9 H 0.066 0.934 10 C -0.165 4.165 11 N -0.549 5.549 12 Si 0.771 3.229 13 H -0.205 1.205 14 H -0.205 1.205 15 H -0.192 1.192 16 C 0.300 3.700 17 O -0.431 6.431 18 C 0.017 3.983 19 H 0.119 0.881 20 C -0.175 4.175 21 C -0.182 4.182 22 C -0.032 4.032 23 O -0.306 6.306 24 C -0.206 4.206 25 C -0.124 4.124 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.170 0.830 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.023 -5.865 -0.048 6.598 hybrid contribution 0.509 0.939 -0.830 1.352 sum -2.514 -4.926 -0.877 5.600 Atomic orbital electron populations 1.20740 0.88546 1.03627 1.02887 1.20249 0.97858 0.92361 1.01688 1.21085 0.92366 0.98940 0.99687 1.21084 0.95390 0.96448 1.04621 1.18340 0.82518 0.95238 1.00154 1.45903 1.04636 1.09604 1.65610 1.19469 0.91714 0.79158 0.97457 1.21276 1.37094 1.06566 0.92244 0.93392 1.25421 0.94905 0.96649 0.99511 1.69978 1.38003 1.18082 1.28883 0.85788 0.78338 0.78155 0.80586 1.20484 1.20509 1.19165 1.21025 0.90735 0.82333 0.75954 1.90328 1.69374 1.34674 1.48750 1.22697 0.89492 0.84608 1.01535 0.88132 1.23313 0.95780 1.03023 0.95395 1.23191 0.96266 0.94571 1.04146 1.23431 0.84874 0.97881 0.97024 1.88415 1.38806 1.25804 1.77574 1.22379 0.95763 0.98711 1.03793 1.21209 0.92761 0.98757 0.99705 0.90628 0.90564 0.90529 0.83756 0.86132 0.95116 0.93825 0.92021 0.92205 0.87476 0.88879 0.87895 0.88812 0.90543 0.82983 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.01 71.24 0.71 -1.34 16 2 C -0.12 -3.58 5.88 -19.84 -0.12 -3.70 16 3 C -0.10 -3.36 9.69 22.25 0.22 -3.14 16 4 C -0.15 -6.28 9.14 22.39 0.20 -6.07 16 5 C 0.13 5.80 6.48 38.15 0.25 6.05 16 6 N -0.54 -24.38 2.68 -635.30 -1.70 -26.08 16 7 C 0.24 11.33 4.03 85.63 0.35 11.67 16 8 C -0.53 -26.27 6.65 25.60 0.17 -26.10 16 9 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 10 C 0.04 1.81 5.45 84.65 0.46 2.27 16 11 N -0.91 -46.78 13.29 21.45 0.28 -46.49 16 12 Si 0.95 39.71 29.54 68.60 2.03 41.74 16 13 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 15 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 16 C 0.51 22.89 6.95 87.66 0.61 23.50 16 17 O -0.55 -26.69 13.09 15.29 0.20 -26.49 16 18 C 0.08 2.99 2.92 30.51 0.09 3.08 16 19 H 0.10 3.75 7.07 -2.38 -0.02 3.73 16 20 C -0.14 -4.95 5.33 32.10 0.17 -4.78 16 21 C -0.14 -3.80 7.03 31.91 0.22 -3.57 16 22 C 0.04 1.18 7.79 72.45 0.56 1.74 16 23 O -0.39 -14.45 10.62 -130.64 -1.39 -15.83 16 24 C -0.19 -7.65 8.97 22.39 0.20 -7.45 16 25 C -0.11 -3.50 9.69 22.25 0.22 -3.28 16 26 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.32 8.08 -2.39 -0.02 1.30 16 28 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 29 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 30 H 0.12 5.25 6.27 -2.91 -0.02 5.23 16 31 H 0.03 1.53 6.57 -2.39 -0.02 1.52 16 32 H 0.04 2.05 5.79 -2.39 -0.01 2.04 16 33 H 0.27 13.25 8.31 -92.71 -0.77 12.48 16 34 H 0.06 2.31 8.05 -2.38 -0.02 2.29 16 35 H 0.11 4.32 5.67 -2.39 -0.01 4.30 16 36 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 37 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.01 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.15 6.79 4.73 -44.41 -0.21 6.58 16 41 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -60.45 329.82 4.57 -55.88 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.84 Total: 28.40 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.32 Total: -11.12 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -1.42 Total: -72.57 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.19 Total: -42.33 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -60.45 4.57 -55.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072678920.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.600 kcal (2) G-P(sol) polarization free energy of solvation -60.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds