Wall clock time and date at job start Tue Mar 31 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 110.01812 * 2 1 4 4 O 1.21294 * 119.99543 * 239.29864 * 3 2 1 5 5 N 1.34773 * 120.00278 * 59.29401 * 3 2 1 6 6 C 1.39993 * 119.99893 * 175.77011 * 5 3 2 7 7 C 1.38921 * 119.99879 * 214.83433 * 6 5 3 8 8 C 1.38005 * 119.99081 * 179.79407 * 7 6 5 9 9 C 1.38900 * 120.00791 * 0.46396 * 8 7 6 10 10 O 1.35773 * 120.00337 * 179.76681 * 9 8 7 11 11 C 1.34814 * 117.00457 * 185.36068 * 10 9 8 12 12 H 1.08000 * 119.99527 * 354.96567 * 11 10 9 13 13 C 1.38626 * 120.00288 * 174.96648 * 11 10 9 14 14 N 1.31575 * 119.99910 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46858 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47114 * 119.99437 * 15 13 11 18 18 H 1.48496 * 109.47435 * 239.99974 * 15 13 11 19 19 C 1.38918 * 119.99993 * 359.78983 * 9 8 7 20 20 C 1.38000 * 120.00007 * 359.97438 * 19 9 8 21 21 C 1.54267 * 110.02929 * 121.38574 * 2 1 3 22 22 C 1.54967 * 104.16042 * 95.75491 * 21 2 1 23 23 C 1.54892 * 102.77430 * 37.88879 * 22 21 2 24 24 C 1.53870 * 110.03471 * 238.60509 * 2 1 3 25 25 H 1.08999 * 109.46911 * 60.70431 * 1 2 3 26 26 H 1.08999 * 109.47367 * 180.70800 * 1 2 3 27 27 H 1.09005 * 109.46921 * 300.70856 * 1 2 3 28 28 H 0.97004 * 120.00108 * 355.50003 * 5 3 2 29 29 H 1.07997 * 120.00336 * 0.02769 * 7 6 5 30 30 H 1.08003 * 119.99436 * 180.23278 * 8 7 6 31 31 H 0.97001 * 119.99690 * 180.02562 * 14 13 11 32 32 H 1.07993 * 119.99794 * 179.97438 * 19 9 8 33 33 H 1.07998 * 120.00162 * 179.97438 * 20 19 9 34 34 H 1.09009 * 110.48827 * 214.40097 * 21 2 1 35 35 H 1.09000 * 110.48950 * 337.04622 * 21 2 1 36 36 H 1.08994 * 110.71915 * 279.57497 * 22 21 2 37 37 H 1.09001 * 110.92268 * 156.28869 * 22 21 2 38 38 H 1.09001 * 110.48774 * 203.41032 * 23 22 21 39 39 H 1.08999 * 110.49005 * 80.76567 * 23 22 21 40 40 H 1.09000 * 110.03113 * 359.95079 * 24 2 1 41 41 H 1.08994 * 110.03363 * 121.33231 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4160 0.0000 4 8 2.7574 1.8022 -0.9032 5 7 1.7166 2.2532 1.0035 6 6 2.2663 3.5398 1.0505 7 6 2.5631 4.1241 2.2755 8 6 3.1090 5.3907 2.3215 9 6 3.3527 6.0853 1.1435 10 8 3.8854 7.3333 1.1891 11 6 3.9937 7.9957 0.0199 12 1 3.7400 7.5014 -0.9062 13 6 4.4308 9.3112 0.0063 14 7 4.7395 9.9135 1.1347 15 14 4.5803 10.2292 -1.6137 16 1 4.1755 9.3352 -2.7283 17 1 3.6969 11.4225 -1.5898 18 1 5.9879 10.6591 -1.8110 19 6 3.0511 5.5032 -0.0812 20 6 2.5097 4.2346 -0.1276 21 6 2.0583 -0.7548 1.2373 22 6 2.3297 -2.1897 0.7187 23 6 2.8885 -1.9397 -0.7041 24 6 2.0571 -0.7531 -1.2340 25 1 -0.3633 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0127 27 1 -0.3633 0.5248 0.8836 28 1 1.0956 1.9657 1.6911 29 1 2.3701 3.5855 3.1915 30 1 3.3432 5.8435 3.2736 31 1 5.0450 10.8341 1.1252 32 1 3.2402 6.0434 -0.9970 33 1 2.2748 3.7822 -1.0797 34 1 2.9806 -0.2987 1.5974 35 1 1.3057 -0.7693 2.0256 36 1 1.4052 -2.7653 0.6750 37 1 3.0687 -2.6951 1.3405 38 1 2.7415 -2.8187 -1.3316 39 1 3.9448 -1.6750 -0.6581 40 1 1.2229 -1.1193 -1.8324 41 1 2.6853 -0.0942 -1.8333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073170978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:19 Heat of formation + Delta-G solvation = -51.121610 kcal Electronic energy + Delta-G solvation = -22529.223728 eV Core-core repulsion = 19181.162447 eV Total energy + Delta-G solvation = -3348.061281 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69173 -38.96526 -37.66909 -36.29237 -34.01632 -32.21779 -31.49371 -30.18853 -28.94615 -27.83691 -25.85103 -25.23171 -22.88808 -22.04089 -20.97765 -20.66099 -19.10139 -18.00874 -17.54476 -16.86082 -16.40482 -15.47947 -15.10466 -14.81980 -14.48883 -14.21999 -13.89651 -13.64990 -13.56123 -13.46563 -12.93756 -12.84096 -12.66199 -12.54239 -11.78668 -11.69763 -11.57977 -11.48454 -11.35829 -11.24411 -11.07909 -11.03010 -10.90413 -10.70979 -10.65571 -10.40665 -9.65432 -9.52675 -9.12259 -8.68332 -8.18981 -6.91968 -6.43277 -4.00787 2.10126 2.23123 2.88108 3.15032 3.16430 3.22083 3.33237 3.99163 4.20935 4.34166 4.49134 4.60436 4.93180 4.97947 5.06285 5.11459 5.18207 5.26460 5.27540 5.40359 5.52798 5.58102 5.60680 5.68945 5.72578 5.75283 5.78765 5.88347 6.00703 6.10118 6.16233 6.17664 6.26476 6.36706 6.75053 6.87824 7.03037 7.12279 7.32601 7.45744 7.72664 7.81210 8.02227 8.41894 9.02793 9.72364 10.74825 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032261 B = 0.003162 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.722299 B = 8853.509639 C = 9293.745684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 C 0.516 3.484 4 O -0.525 6.525 5 N -0.658 5.658 6 C 0.034 3.966 7 C -0.093 4.093 8 C -0.178 4.178 9 C 0.146 3.854 10 O -0.177 6.177 11 C -0.390 4.390 12 H 0.093 0.907 13 C 0.039 3.961 14 N -0.863 5.863 15 Si 0.941 3.059 16 H -0.266 1.266 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.221 4.221 20 C -0.064 4.064 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.116 4.116 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.059 0.941 28 H 0.400 0.600 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.269 0.731 32 H 0.130 0.870 33 H 0.124 0.876 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 -21.345 -0.120 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.086 4.086 3 C 0.302 3.698 4 O -0.401 6.401 5 N -0.302 5.302 6 C -0.059 4.059 7 C -0.114 4.114 8 C -0.198 4.198 9 C 0.093 3.907 10 O -0.081 6.081 11 C -0.466 4.466 12 H 0.110 0.890 13 C -0.165 4.165 14 N -0.498 5.498 15 Si 0.765 3.235 16 H -0.190 1.190 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.240 4.240 20 C -0.084 4.084 21 C -0.151 4.151 22 C -0.160 4.160 23 C -0.162 4.162 24 C -0.154 4.154 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.679 -20.715 -0.521 22.098 hybrid contribution -0.237 0.357 -0.427 0.605 sum -7.916 -20.357 -0.948 21.863 Atomic orbital electron populations 1.21897 0.92399 1.02678 1.02485 1.21410 0.96988 0.92111 0.98086 1.20537 0.80369 0.86939 0.81915 1.90669 1.37265 1.76779 1.35376 1.43200 1.46199 1.12744 1.28073 1.17289 1.08779 0.85612 0.94193 1.20357 1.00334 0.95321 0.95355 1.19988 1.07784 0.95336 0.96703 1.19405 0.91462 0.86772 0.93108 1.83971 1.68392 1.21792 1.33929 1.21387 1.46294 0.94884 0.84047 0.88979 1.25282 0.96495 0.95678 0.99082 1.70057 1.41382 1.12615 1.25794 0.85649 0.78330 0.79357 0.80131 1.19041 1.20147 1.20144 1.21114 1.08169 0.96462 0.98295 1.20844 0.97538 0.92918 0.97138 1.22471 1.01430 0.95476 0.95725 1.22490 1.00877 0.96093 0.96506 1.22360 0.99925 0.97820 0.96062 1.22240 1.00187 0.96845 0.96081 0.91947 0.91357 0.92197 0.76524 0.86792 0.86083 0.92101 0.85228 0.85796 0.90988 0.90797 0.91372 0.91403 0.91599 0.91480 0.91377 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.04 37.16 0.30 -0.78 16 2 C -0.08 -0.83 0.78 -154.54 -0.12 -0.95 16 3 C 0.52 7.42 6.20 -10.98 -0.07 7.36 16 4 O -0.53 -9.76 12.65 5.55 0.07 -9.69 16 5 N -0.66 -9.15 5.20 -9.82 -0.05 -9.20 16 6 C 0.03 0.61 6.30 -83.62 -0.53 0.08 16 7 C -0.09 -1.65 9.96 -39.41 -0.39 -2.05 16 8 C -0.18 -3.76 9.98 -39.42 -0.39 -4.15 16 9 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 10 O -0.18 -5.12 9.75 0.02 0.00 -5.12 16 11 C -0.39 -11.08 9.48 30.88 0.29 -10.79 16 12 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 13 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 14 N -0.86 -25.53 13.67 55.48 0.76 -24.77 16 15 Si 0.94 20.89 29.55 -169.99 -5.02 15.86 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 C -0.22 -5.08 9.16 -39.42 -0.36 -5.44 16 20 C -0.06 -1.33 8.69 -39.42 -0.34 -1.67 16 21 C -0.11 -0.95 5.85 -25.03 -0.15 -1.10 16 22 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 23 C -0.12 -1.07 6.83 -25.07 -0.17 -1.24 16 24 C -0.12 -1.19 6.06 -25.61 -0.16 -1.34 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.41 7.46 -51.93 -0.39 0.02 16 28 H 0.40 4.13 8.11 -40.82 -0.33 3.80 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.12 2.42 8.06 -52.48 -0.42 1.99 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.13 3.01 5.63 -52.49 -0.30 2.71 16 33 H 0.12 2.54 6.23 -52.49 -0.33 2.21 16 34 H 0.07 0.72 7.85 -51.92 -0.41 0.31 16 35 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 41 H 0.09 1.18 6.39 -51.93 -0.33 0.85 16 LS Contribution 334.18 15.07 5.04 5.04 Total: -1.00 -32.77 334.18 -7.50 -40.27 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.68 Total: 6.43 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -2.61 Total: -18.82 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.71 Total: -33.97 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.07 Total: -14.81 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.77 -7.50 -40.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073170978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.850 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds