Wall clock time and date at job start Tue Mar 31 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 110.01812 * 2 1 4 4 O 1.21294 * 119.99543 * 239.29864 * 3 2 1 5 5 N 1.34773 * 120.00278 * 59.29401 * 3 2 1 6 6 C 1.39993 * 119.99893 * 175.77011 * 5 3 2 7 7 C 1.38921 * 119.99879 * 214.83433 * 6 5 3 8 8 C 1.38005 * 119.99081 * 179.79407 * 7 6 5 9 9 C 1.38900 * 120.00791 * 0.46396 * 8 7 6 10 10 O 1.35773 * 120.00337 * 179.76681 * 9 8 7 11 11 C 1.34814 * 117.00457 * 185.36068 * 10 9 8 12 12 H 1.08000 * 119.99527 * 354.96567 * 11 10 9 13 13 C 1.38626 * 120.00288 * 174.96648 * 11 10 9 14 14 N 1.31575 * 119.99910 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46858 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47114 * 119.99437 * 15 13 11 18 18 H 1.48496 * 109.47435 * 239.99974 * 15 13 11 19 19 C 1.38918 * 119.99993 * 359.78983 * 9 8 7 20 20 C 1.38000 * 120.00007 * 359.97438 * 19 9 8 21 21 C 1.54267 * 110.02929 * 121.38574 * 2 1 3 22 22 C 1.54967 * 104.16042 * 95.75491 * 21 2 1 23 23 C 1.54892 * 102.77430 * 37.88879 * 22 21 2 24 24 C 1.53870 * 110.03471 * 238.60509 * 2 1 3 25 25 H 1.08999 * 109.46911 * 60.70431 * 1 2 3 26 26 H 1.08999 * 109.47367 * 180.70800 * 1 2 3 27 27 H 1.09005 * 109.46921 * 300.70856 * 1 2 3 28 28 H 0.97004 * 120.00108 * 355.50003 * 5 3 2 29 29 H 1.07997 * 120.00336 * 0.02769 * 7 6 5 30 30 H 1.08003 * 119.99436 * 180.23278 * 8 7 6 31 31 H 0.97001 * 119.99690 * 180.02562 * 14 13 11 32 32 H 1.07993 * 119.99794 * 179.97438 * 19 9 8 33 33 H 1.07998 * 120.00162 * 179.97438 * 20 19 9 34 34 H 1.09009 * 110.48827 * 214.40097 * 21 2 1 35 35 H 1.09000 * 110.48950 * 337.04622 * 21 2 1 36 36 H 1.08994 * 110.71915 * 279.57497 * 22 21 2 37 37 H 1.09001 * 110.92268 * 156.28869 * 22 21 2 38 38 H 1.09001 * 110.48774 * 203.41032 * 23 22 21 39 39 H 1.08999 * 110.49005 * 80.76567 * 23 22 21 40 40 H 1.09000 * 110.03113 * 359.95079 * 24 2 1 41 41 H 1.08994 * 110.03363 * 121.33231 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4160 0.0000 4 8 2.7574 1.8022 -0.9032 5 7 1.7166 2.2532 1.0035 6 6 2.2663 3.5398 1.0505 7 6 2.5631 4.1241 2.2755 8 6 3.1090 5.3907 2.3215 9 6 3.3527 6.0853 1.1435 10 8 3.8854 7.3333 1.1891 11 6 3.9937 7.9957 0.0199 12 1 3.7400 7.5014 -0.9062 13 6 4.4308 9.3112 0.0063 14 7 4.7395 9.9135 1.1347 15 14 4.5803 10.2292 -1.6137 16 1 4.1755 9.3352 -2.7283 17 1 3.6969 11.4225 -1.5898 18 1 5.9879 10.6591 -1.8110 19 6 3.0511 5.5032 -0.0812 20 6 2.5097 4.2346 -0.1276 21 6 2.0583 -0.7548 1.2373 22 6 2.3297 -2.1897 0.7187 23 6 2.8885 -1.9397 -0.7041 24 6 2.0571 -0.7531 -1.2340 25 1 -0.3633 0.5029 -0.8962 26 1 -0.3634 -1.0276 0.0127 27 1 -0.3633 0.5248 0.8836 28 1 1.0956 1.9657 1.6911 29 1 2.3701 3.5855 3.1915 30 1 3.3432 5.8435 3.2736 31 1 5.0450 10.8341 1.1252 32 1 3.2402 6.0434 -0.9970 33 1 2.2748 3.7822 -1.0797 34 1 2.9806 -0.2987 1.5974 35 1 1.3057 -0.7693 2.0256 36 1 1.4052 -2.7653 0.6750 37 1 3.0687 -2.6951 1.3405 38 1 2.7415 -2.8187 -1.3316 39 1 3.9448 -1.6750 -0.6581 40 1 1.2229 -1.1193 -1.8324 41 1 2.6853 -0.0942 -1.8333 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073170978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:19 Heat of formation + Delta-G solvation = -71.849065 kcal Electronic energy + Delta-G solvation = -22530.122538 eV Core-core repulsion = 19181.162447 eV Total energy + Delta-G solvation = -3348.960091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.87601 -40.61819 -38.90940 -37.78615 -35.47493 -34.20136 -32.32163 -31.88021 -29.75975 -29.30878 -27.34456 -26.47142 -24.28055 -23.64303 -22.20867 -21.52724 -20.36202 -19.74611 -19.08697 -18.12421 -17.91920 -16.54908 -16.25635 -16.24806 -15.98981 -15.63650 -15.50154 -15.27368 -14.71010 -14.66028 -14.33210 -14.18774 -13.62308 -13.58398 -13.34167 -13.22347 -13.15745 -12.73653 -12.57127 -12.43651 -12.12872 -12.00769 -11.96261 -11.74961 -11.59557 -11.42923 -11.37489 -11.09040 -10.66175 -10.48840 -9.86127 -8.63591 -8.48927 -6.15774 0.48597 0.53485 1.33672 1.40257 1.51646 1.65193 2.12897 2.17036 2.79778 3.12634 3.44093 3.49230 3.58804 3.77152 4.03280 4.09551 4.16862 4.35178 4.42239 4.45814 4.50944 4.56089 4.63511 4.72714 4.77711 4.91582 4.96426 5.02505 5.06358 5.09565 5.12062 5.15237 5.24529 5.32568 5.35737 5.39380 5.46059 5.48757 5.59070 5.68000 6.00478 6.14862 6.54279 6.95844 7.24117 7.74908 8.74070 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032261 B = 0.003162 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.722299 B = 8853.509639 C = 9293.745684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 C 0.512 3.488 4 O -0.571 6.571 5 N -0.646 5.646 6 C 0.061 3.939 7 C -0.077 4.077 8 C -0.179 4.179 9 C 0.107 3.893 10 O -0.227 6.227 11 C -0.414 4.414 12 H 0.096 0.904 13 C -0.020 4.020 14 N -0.917 5.917 15 Si 1.016 2.984 16 H -0.257 1.257 17 H -0.265 1.265 18 H -0.267 1.267 19 C -0.230 4.230 20 C -0.078 4.078 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.120 4.120 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.424 0.576 29 H 0.168 0.832 30 H 0.130 0.870 31 H 0.274 0.726 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.084 0.916 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.415 -24.679 0.616 26.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 C 0.301 3.699 4 O -0.450 6.450 5 N -0.292 5.292 6 C -0.033 4.033 7 C -0.097 4.097 8 C -0.199 4.199 9 C 0.057 3.943 10 O -0.133 6.133 11 C -0.490 4.490 12 H 0.113 0.887 13 C -0.217 4.217 14 N -0.556 5.556 15 Si 0.836 3.164 16 H -0.180 1.180 17 H -0.189 1.189 18 H -0.192 1.192 19 C -0.250 4.250 20 C -0.098 4.098 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.163 4.163 24 C -0.158 4.158 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.263 0.737 29 H 0.185 0.815 30 H 0.148 0.852 31 H 0.083 0.917 32 H 0.133 0.867 33 H 0.140 0.860 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.772 -24.132 0.243 26.036 hybrid contribution 0.294 1.024 -0.619 1.232 sum -9.478 -23.107 -0.376 24.978 Atomic orbital electron populations 1.21943 0.90051 1.04524 1.02778 1.21476 0.98636 0.88673 0.99003 1.21496 0.79212 0.88548 0.80666 1.90670 1.39241 1.77944 1.37123 1.43162 1.46326 1.10873 1.28871 1.17450 1.05713 0.86731 0.93417 1.20794 0.97852 0.93876 0.97154 1.20338 1.07267 0.96377 0.95914 1.19925 0.93168 0.86304 0.94951 1.83932 1.71350 1.23790 1.34272 1.21799 1.47032 0.95726 0.84485 0.88668 1.26523 0.95759 0.96190 1.03268 1.70181 1.43627 1.13301 1.28448 0.84563 0.78784 0.77909 0.75157 1.18043 1.18942 1.19159 1.21093 1.08921 0.97473 0.97485 1.20906 0.98149 0.92280 0.98453 1.22524 1.01400 0.95586 0.95448 1.22498 1.02027 0.95631 0.95116 1.22371 0.98665 0.97626 0.97634 1.22270 1.00454 0.96924 0.96158 0.93078 0.88794 0.90545 0.73719 0.81490 0.85218 0.91730 0.86725 0.85965 0.92767 0.87855 0.89197 0.90599 0.90056 0.93294 0.89767 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.04 71.98 0.58 -0.98 16 2 C -0.07 -1.29 0.78 -52.20 -0.04 -1.33 16 3 C 0.51 13.81 6.20 87.66 0.54 14.35 16 4 O -0.57 -21.32 12.65 -3.07 -0.04 -21.36 16 5 N -0.65 -15.91 5.20 -303.37 -1.58 -17.49 16 6 C 0.06 2.06 6.30 38.16 0.24 2.30 16 7 C -0.08 -2.49 9.96 22.38 0.22 -2.27 16 8 C -0.18 -7.49 9.98 22.37 0.22 -7.26 16 9 C 0.11 5.50 6.65 22.59 0.15 5.65 16 10 O -0.23 -13.92 9.75 -22.83 -0.22 -14.14 16 11 C -0.41 -24.94 9.48 67.91 0.64 -24.30 16 12 H 0.10 5.41 5.20 -2.91 -0.02 5.40 16 13 C -0.02 -1.14 5.49 84.82 0.47 -0.68 16 14 N -0.92 -56.86 13.67 21.61 0.30 -56.57 16 15 Si 1.02 44.25 29.55 68.60 2.03 46.27 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 17 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 C -0.23 -11.07 9.16 22.38 0.20 -10.86 16 20 C -0.08 -3.23 8.69 22.38 0.19 -3.04 16 21 C -0.11 -1.43 5.85 31.70 0.19 -1.25 16 22 C -0.12 -1.23 6.91 31.91 0.22 -1.01 16 23 C -0.13 -1.89 6.83 31.67 0.22 -1.67 16 24 C -0.12 -2.27 6.06 31.32 0.19 -2.08 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.64 7.46 -2.38 -0.02 0.62 16 28 H 0.42 6.66 8.11 -92.71 -0.75 5.91 16 29 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 31 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.11 5.72 5.63 -2.91 -0.02 5.71 16 33 H 0.12 5.13 6.23 -2.91 -0.02 5.11 16 34 H 0.05 0.91 7.85 -2.38 -0.02 0.89 16 35 H 0.10 0.75 7.84 -2.39 -0.02 0.73 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 41 H 0.05 1.44 6.39 -2.39 -0.02 1.43 16 Total: -1.00 -78.17 334.18 5.02 -73.15 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.30 Total: 24.56 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.24 Total: -34.43 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -1.28 Total: -74.05 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.26 Total: -35.50 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -78.17 5.02 -73.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073170978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.299 kcal (2) G-P(sol) polarization free energy of solvation -78.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds