Wall clock time and date at job start Tue Mar 31 2020 05:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38397 * 120.11640 * 2 1 4 4 C 1.37696 * 119.97620 * 180.02562 * 3 2 1 5 5 C 1.38934 * 120.78847 * 359.62063 * 4 3 2 6 6 C 1.39241 * 118.87333 * 0.57487 * 5 4 3 7 7 C 1.37980 * 120.24089 * 359.61577 * 6 5 4 8 8 C 1.50700 * 119.82388 * 179.97438 * 7 6 5 9 9 O 1.36128 * 111.22185 * 180.64280 * 5 4 3 10 10 C 1.43774 * 109.24347 * 340.95907 * 9 5 4 11 11 H 1.09002 * 110.74792 * 269.43123 * 10 9 5 12 12 C 1.50700 * 110.74737 * 146.26555 * 10 9 5 13 13 O 1.21275 * 120.00222 * 358.91123 * 12 10 9 14 14 N 1.34777 * 119.99958 * 178.91740 * 12 10 9 15 15 C 1.46501 * 120.00090 * 359.97438 * 14 12 10 16 16 C 1.46502 * 120.00073 * 179.97438 * 14 12 10 17 17 C 1.50700 * 109.47151 * 89.99936 * 16 14 12 18 18 H 1.08006 * 120.00018 * 0.02562 * 17 16 14 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99567 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00172 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47126 * 90.00438 * 21 19 17 23 23 H 1.48502 * 109.47413 * 210.00012 * 21 19 17 24 24 H 1.48499 * 109.47343 * 330.00398 * 21 19 17 25 25 C 1.51637 * 132.17269 * 179.03856 * 4 3 2 26 26 H 1.08995 * 109.47568 * 90.00053 * 1 2 3 27 27 H 1.09002 * 109.47370 * 209.99968 * 1 2 3 28 28 H 1.08998 * 109.47389 * 329.99701 * 1 2 3 29 29 H 1.08001 * 120.00807 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.87866 * 179.59550 * 6 5 4 31 31 H 1.08997 * 109.46634 * 270.01157 * 8 7 6 32 32 H 1.09000 * 109.47118 * 30.00871 * 8 7 6 33 33 H 1.08998 * 109.47323 * 150.01091 * 8 7 6 34 34 H 1.08999 * 109.47284 * 90.00201 * 15 14 12 35 35 H 1.08996 * 109.47340 * 210.00243 * 15 14 12 36 36 H 1.09005 * 109.47021 * 330.00669 * 15 14 12 37 37 H 1.08995 * 109.46854 * 209.99611 * 16 14 12 38 38 H 1.08993 * 109.46982 * 330.00089 * 16 14 12 39 39 H 0.96998 * 120.00059 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.94356 * 77.73411 * 25 4 3 41 41 H 1.09004 * 110.93820 * 314.04703 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1938 -0.0005 5 6 4.2866 -0.0015 0.0068 6 6 3.5804 -1.2015 0.0026 7 6 2.2006 -1.1958 -0.0008 8 6 1.4458 -2.5001 -0.0060 9 8 5.6294 0.2215 0.0191 10 6 5.8908 1.5647 -0.4223 11 1 6.0343 1.5952 -1.5024 12 6 7.0893 2.1369 0.2899 13 8 7.6719 1.4763 1.1235 14 7 7.5137 3.3830 0.0004 15 6 6.8102 4.1809 -1.0069 16 6 8.6785 3.9395 0.6931 17 6 9.9289 3.6060 -0.0791 18 1 9.8625 3.0367 -0.9946 19 6 11.1575 4.0283 0.3824 20 7 11.2382 4.7219 1.4969 21 14 12.7074 3.6143 -0.5744 22 1 12.9845 4.6916 -1.5582 23 1 13.8518 3.4952 0.3644 24 1 12.5182 2.3270 -1.2902 25 6 4.5991 2.3150 -0.0195 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6634 2.1336 -0.0004 30 1 4.1146 -2.1401 0.0015 31 1 1.2665 -2.8120 -1.0349 32 1 2.0327 -3.2617 0.5074 33 1 0.4922 -2.3701 0.5056 34 1 6.0202 4.7581 -0.5264 35 1 7.5137 4.8593 -1.4893 36 1 6.3730 3.5189 -1.7544 37 1 8.5746 5.0220 0.7663 38 1 8.7445 3.5123 1.6936 39 1 12.1026 5.0188 1.8218 40 1 4.7019 2.7651 0.9678 41 1 4.3376 3.0673 -0.7637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:40 Heat of formation + Delta-G solvation = -42.221167 kcal Electronic energy + Delta-G solvation = -22622.583052 eV Core-core repulsion = 19274.907722 eV Total energy + Delta-G solvation = -3347.675329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.33461 -39.03712 -37.81372 -34.94678 -33.36802 -32.69248 -32.08970 -30.97577 -28.10958 -27.04394 -26.76377 -25.73216 -23.65909 -22.36988 -22.06013 -20.56559 -18.80856 -17.35019 -16.90748 -16.48806 -16.43215 -15.60268 -15.04235 -14.83463 -14.57909 -14.34954 -14.05474 -13.87841 -13.42237 -13.17349 -13.00675 -12.81406 -12.63448 -12.46916 -12.30360 -12.19251 -12.17528 -11.90863 -11.58096 -11.45806 -11.24152 -10.93877 -10.89436 -10.62850 -10.59835 -10.18191 -9.66919 -8.99064 -8.81668 -8.46151 -7.97877 -7.75326 -6.07119 -4.12168 1.17261 1.29655 2.94881 3.25791 3.29333 3.36383 3.41408 3.52510 3.94392 4.35686 4.44932 4.50335 4.69446 4.76689 4.93165 4.95227 4.99249 5.07664 5.23000 5.27957 5.30574 5.38367 5.47613 5.53367 5.55566 5.61251 5.65079 5.74387 5.82225 5.82875 6.05057 6.12616 6.17912 6.36281 6.46420 6.59335 6.95077 7.20657 7.37015 7.45401 7.88805 8.18419 8.26362 8.82937 8.97578 9.53004 11.01127 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.003236 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.780100 B = 8649.865985 C = 9043.755804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.123 4.123 3 C -0.064 4.064 4 C -0.175 4.175 5 C 0.112 3.888 6 C -0.137 4.137 7 C -0.054 4.054 8 C -0.115 4.115 9 O -0.273 6.273 10 C 0.064 3.936 11 H 0.107 0.893 12 C 0.509 3.491 13 O -0.516 6.516 14 N -0.595 5.595 15 C 0.078 3.922 16 C 0.246 3.754 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.095 4.095 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.095 0.905 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.628 -6.539 -6.135 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.176 4.176 5 C 0.066 3.934 6 C -0.156 4.156 7 C -0.054 4.054 8 C -0.172 4.172 9 O -0.186 6.186 10 C 0.004 3.996 11 H 0.124 0.876 12 C 0.293 3.707 13 O -0.391 6.391 14 N -0.329 5.329 15 C -0.066 4.066 16 C 0.128 3.872 17 C -0.568 4.568 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.132 4.132 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.142 0.858 30 H 0.146 0.854 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.114 0.886 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.962 -6.932 -5.486 23.675 hybrid contribution 1.043 0.103 -0.630 1.224 sum -20.918 -6.829 -6.117 22.839 Atomic orbital electron populations 1.20743 0.90991 1.02667 1.02072 1.19550 0.95923 0.92129 1.04752 1.20101 0.91523 0.97828 0.98754 1.20743 0.94592 0.94462 1.07808 1.19643 0.83481 0.94546 0.95777 1.20060 0.92720 0.95721 1.07099 1.19389 0.92218 0.95198 0.98578 1.20857 1.00027 0.93801 1.02490 1.86976 1.19169 1.30703 1.81712 1.23322 0.95529 0.81011 0.99698 0.87590 1.19684 0.84476 0.82597 0.83922 1.90722 1.56699 1.58460 1.33246 1.48078 1.31458 1.13497 1.39879 1.21772 0.97243 0.96142 0.91419 1.19354 0.80563 0.93805 0.93503 1.21426 0.91266 1.34994 1.09116 0.92366 1.24938 0.99100 0.94963 0.95085 1.69929 1.25319 1.37164 1.20909 0.86472 0.82426 0.78795 0.79603 1.20604 1.21030 1.19832 1.21743 0.90445 0.96863 1.04187 0.91473 0.91295 0.91791 0.85784 0.85390 0.90956 0.91403 0.90932 0.93303 0.90265 0.92563 0.94584 0.93691 0.92638 0.88628 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.60 36.00 0.35 -0.42 16 2 C -0.12 -1.27 5.89 -104.56 -0.62 -1.89 16 3 C -0.06 -0.72 9.70 -39.72 -0.39 -1.10 16 4 C -0.18 -2.37 6.27 -104.10 -0.65 -3.03 16 5 C 0.11 1.73 7.04 -38.95 -0.27 1.46 16 6 C -0.14 -1.81 9.71 -39.30 -0.38 -2.19 16 7 C -0.05 -0.58 5.87 -104.71 -0.61 -1.20 16 8 C -0.12 -0.87 9.60 36.01 0.35 -0.52 16 9 O -0.27 -5.11 10.39 -39.21 -0.41 -5.52 16 10 C 0.06 1.08 3.06 -26.98 -0.08 0.99 16 11 H 0.11 1.52 7.21 -51.93 -0.37 1.14 16 12 C 0.51 11.07 7.04 -10.98 -0.08 10.99 16 13 O -0.52 -13.92 16.15 -13.50 -0.22 -14.14 16 14 N -0.60 -12.53 2.86 -182.96 -0.52 -13.06 16 15 C 0.08 1.17 9.19 59.85 0.55 1.72 16 16 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 17 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 18 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 21 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 C -0.10 -1.27 5.70 -26.52 -0.15 -1.42 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.41 5.95 -51.93 -0.31 0.11 16 28 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.07 0.45 5.94 -51.93 -0.31 0.14 16 34 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 35 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 36 H 0.06 0.68 6.11 -51.93 -0.32 0.36 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 40 H 0.10 1.35 7.92 -51.93 -0.41 0.94 16 41 H 0.10 1.00 7.57 -51.93 -0.39 0.61 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -34.92 339.28 -8.60 -43.52 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.84 Total: -3.07 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -2.44 Total: -3.90 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.21 Total: -38.94 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.63 Total: -19.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.92 -8.60 -43.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.294 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds