Wall clock time and date at job start Tue Mar 31 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38397 * 120.11640 * 2 1 4 4 C 1.37696 * 119.97620 * 180.02562 * 3 2 1 5 5 C 1.38934 * 120.78847 * 359.62063 * 4 3 2 6 6 C 1.39241 * 118.87333 * 0.57487 * 5 4 3 7 7 C 1.37980 * 120.24089 * 359.61577 * 6 5 4 8 8 C 1.50700 * 119.82388 * 179.97438 * 7 6 5 9 9 O 1.36128 * 111.22185 * 180.64280 * 5 4 3 10 10 C 1.43774 * 109.24347 * 340.95907 * 9 5 4 11 11 H 1.09002 * 110.74792 * 269.43123 * 10 9 5 12 12 C 1.50700 * 110.74737 * 146.26555 * 10 9 5 13 13 O 1.21275 * 120.00222 * 358.91123 * 12 10 9 14 14 N 1.34777 * 119.99958 * 178.91740 * 12 10 9 15 15 C 1.46501 * 120.00090 * 359.97438 * 14 12 10 16 16 C 1.46502 * 120.00073 * 179.97438 * 14 12 10 17 17 C 1.50700 * 109.47151 * 89.99936 * 16 14 12 18 18 H 1.08006 * 120.00018 * 0.02562 * 17 16 14 19 19 C 1.37876 * 120.00339 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99567 * 0.02562 * 19 17 16 21 21 Si 1.86790 * 120.00172 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47126 * 90.00438 * 21 19 17 23 23 H 1.48502 * 109.47413 * 210.00012 * 21 19 17 24 24 H 1.48499 * 109.47343 * 330.00398 * 21 19 17 25 25 C 1.51637 * 132.17269 * 179.03856 * 4 3 2 26 26 H 1.08995 * 109.47568 * 90.00053 * 1 2 3 27 27 H 1.09002 * 109.47370 * 209.99968 * 1 2 3 28 28 H 1.08998 * 109.47389 * 329.99701 * 1 2 3 29 29 H 1.08001 * 120.00807 * 359.97438 * 3 2 1 30 30 H 1.07994 * 119.87866 * 179.59550 * 6 5 4 31 31 H 1.08997 * 109.46634 * 270.01157 * 8 7 6 32 32 H 1.09000 * 109.47118 * 30.00871 * 8 7 6 33 33 H 1.08998 * 109.47323 * 150.01091 * 8 7 6 34 34 H 1.08999 * 109.47284 * 90.00201 * 15 14 12 35 35 H 1.08996 * 109.47340 * 210.00243 * 15 14 12 36 36 H 1.09005 * 109.47021 * 330.00669 * 15 14 12 37 37 H 1.08995 * 109.46854 * 209.99611 * 16 14 12 38 38 H 1.08993 * 109.46982 * 330.00089 * 16 14 12 39 39 H 0.96998 * 120.00059 * 179.97438 * 20 19 17 40 40 H 1.08997 * 110.94356 * 77.73411 * 25 4 3 41 41 H 1.09004 * 110.93820 * 314.04703 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1938 -0.0005 5 6 4.2866 -0.0015 0.0068 6 6 3.5804 -1.2015 0.0026 7 6 2.2006 -1.1958 -0.0008 8 6 1.4458 -2.5001 -0.0060 9 8 5.6294 0.2215 0.0191 10 6 5.8908 1.5647 -0.4223 11 1 6.0343 1.5952 -1.5024 12 6 7.0893 2.1369 0.2899 13 8 7.6719 1.4763 1.1235 14 7 7.5137 3.3830 0.0004 15 6 6.8102 4.1809 -1.0069 16 6 8.6785 3.9395 0.6931 17 6 9.9289 3.6060 -0.0791 18 1 9.8625 3.0367 -0.9946 19 6 11.1575 4.0283 0.3824 20 7 11.2382 4.7219 1.4969 21 14 12.7074 3.6143 -0.5744 22 1 12.9845 4.6916 -1.5582 23 1 13.8518 3.4952 0.3644 24 1 12.5182 2.3270 -1.2902 25 6 4.5991 2.3150 -0.0195 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.6634 2.1336 -0.0004 30 1 4.1146 -2.1401 0.0015 31 1 1.2665 -2.8120 -1.0349 32 1 2.0327 -3.2617 0.5074 33 1 0.4922 -2.3701 0.5056 34 1 6.0202 4.7581 -0.5264 35 1 7.5137 4.8593 -1.4893 36 1 6.3730 3.5189 -1.7544 37 1 8.5746 5.0220 0.7663 38 1 8.7445 3.5123 1.6936 39 1 12.1026 5.0188 1.8218 40 1 4.7019 2.7651 0.9678 41 1 4.3376 3.0673 -0.7637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079729521.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:39 Heat of formation + Delta-G solvation = -63.774757 kcal Electronic energy + Delta-G solvation = -22623.517685 eV Core-core repulsion = 19274.907722 eV Total energy + Delta-G solvation = -3348.609963 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.48717 -40.49077 -38.97093 -36.74584 -34.90314 -34.23129 -32.98155 -32.09355 -29.83736 -28.05774 -27.73613 -27.20960 -25.20484 -23.78238 -23.04959 -21.58045 -20.36164 -18.85965 -18.48963 -17.98429 -17.72253 -17.17334 -16.59303 -16.01020 -15.93899 -15.63993 -15.08879 -14.90882 -14.67960 -14.29787 -14.22083 -13.91022 -13.74845 -13.70005 -13.52375 -13.49247 -13.19055 -13.11265 -12.93641 -12.79972 -12.69233 -12.53960 -12.24476 -12.13633 -11.81655 -11.75748 -11.58613 -10.70300 -10.67001 -9.71412 -9.54768 -8.95393 -8.26279 -6.41122 0.26494 0.36652 1.34372 1.38189 1.46468 1.52957 1.75006 2.34395 2.49820 2.70614 3.03747 3.23313 3.35797 3.68971 3.83240 3.92502 3.97873 4.14095 4.29071 4.36076 4.45016 4.57134 4.66587 4.68934 4.73925 4.79719 4.81516 4.91012 4.95734 4.99082 5.06105 5.16544 5.19730 5.26893 5.36361 5.41843 5.48608 5.66215 5.73377 5.78500 6.00607 6.18663 6.57075 6.67826 7.17983 7.33290 8.81278 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.003236 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.780100 B = 8649.865985 C = 9043.755804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.118 4.118 3 C -0.065 4.065 4 C -0.182 4.182 5 C 0.067 3.933 6 C -0.152 4.152 7 C -0.057 4.057 8 C -0.114 4.114 9 O -0.315 6.315 10 C 0.072 3.928 11 H 0.134 0.866 12 C 0.500 3.500 13 O -0.587 6.587 14 N -0.596 5.596 15 C 0.069 3.931 16 C 0.259 3.741 17 C -0.547 4.547 18 H 0.053 0.947 19 C 0.008 3.992 20 N -0.927 5.927 21 Si 0.969 3.031 22 H -0.259 1.259 23 H -0.281 1.281 24 H -0.275 1.275 25 C -0.084 4.084 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.154 0.846 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.035 0.965 38 H -0.004 1.004 39 H 0.268 0.732 40 H 0.082 0.918 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.560 -6.245 -8.286 27.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.182 4.182 5 C 0.022 3.978 6 C -0.171 4.171 7 C -0.057 4.057 8 C -0.170 4.170 9 O -0.229 6.229 10 C 0.013 3.987 11 H 0.152 0.848 12 C 0.287 3.713 13 O -0.467 6.467 14 N -0.328 5.328 15 C -0.072 4.072 16 C 0.138 3.862 17 C -0.586 4.586 18 H 0.072 0.928 19 C -0.191 4.191 20 N -0.567 5.567 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.200 1.200 25 C -0.121 4.121 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.171 0.829 30 H 0.144 0.856 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.053 0.947 38 H 0.014 0.986 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -24.947 -6.605 -7.682 26.926 hybrid contribution 1.827 -0.032 0.073 1.829 sum -23.120 -6.637 -7.608 25.229 Atomic orbital electron populations 1.20838 0.88177 1.03960 1.03392 1.20052 0.97899 0.91494 1.02383 1.20486 0.90560 0.99551 0.97702 1.20853 0.95537 0.93403 1.08453 1.20012 0.82440 0.96395 0.98906 1.20337 0.93982 0.95179 1.07576 1.19807 0.91337 0.97192 0.97353 1.20943 1.00391 0.92042 1.03672 1.86906 1.21572 1.31526 1.82857 1.23266 0.94415 0.81122 0.99926 0.84838 1.20661 0.85384 0.82142 0.83159 1.90671 1.59297 1.60298 1.36428 1.48053 1.30337 1.14024 1.40421 1.22167 0.97571 0.96515 0.90994 1.18841 0.82380 0.93286 0.91652 1.21703 0.92602 1.35081 1.09196 0.92834 1.25866 1.02558 0.94645 0.96044 1.70044 1.26374 1.37960 1.22314 0.85395 0.78024 0.78833 0.78440 1.18394 1.20606 1.20016 1.21736 0.88416 0.97288 1.04666 0.89954 0.89998 0.90618 0.82882 0.85582 0.89550 0.91347 0.88977 0.89898 0.90646 0.88904 0.94694 0.98583 0.92279 0.89970 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 9.60 71.24 0.68 -0.36 16 2 C -0.12 -2.06 5.89 -19.83 -0.12 -2.18 16 3 C -0.07 -1.26 9.70 22.18 0.22 -1.05 16 4 C -0.18 -4.66 6.27 -19.53 -0.12 -4.79 16 5 C 0.07 2.12 7.04 22.68 0.16 2.28 16 6 C -0.15 -4.02 9.71 22.45 0.22 -3.80 16 7 C -0.06 -1.12 5.87 -19.92 -0.12 -1.24 16 8 C -0.11 -1.41 9.60 71.24 0.68 -0.73 16 9 O -0.31 -12.33 10.39 -76.78 -0.80 -13.13 16 10 C 0.07 2.41 3.06 30.43 0.09 2.50 16 11 H 0.13 3.63 7.21 -2.39 -0.02 3.61 16 12 C 0.50 22.63 7.04 87.66 0.62 23.24 16 13 O -0.59 -34.04 16.15 15.22 0.25 -33.79 16 14 N -0.60 -25.62 2.86 -851.15 -2.43 -28.05 16 15 C 0.07 1.93 9.19 127.77 1.17 3.10 16 16 C 0.26 14.18 5.16 85.63 0.44 14.63 16 17 C -0.55 -32.09 9.39 25.60 0.24 -31.85 16 18 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 19 C 0.01 0.47 5.46 84.65 0.46 0.93 16 20 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 21 Si 0.97 45.55 29.54 68.60 2.03 47.57 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 C -0.08 -2.10 5.70 30.73 0.18 -1.93 16 26 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 0.61 5.95 -2.39 -0.01 0.60 16 28 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 30 H 0.13 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 33 H 0.09 0.78 5.94 -2.39 -0.01 0.77 16 34 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 35 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 36 H 0.09 1.92 6.11 -2.38 -0.01 1.91 16 37 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 38 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.08 2.28 7.92 -2.39 -0.02 2.26 16 41 H 0.14 2.25 7.57 -2.38 -0.02 2.23 16 Total: -1.00 -82.62 339.28 5.17 -77.45 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: 1.03 Total: 7.55 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: 4.81 Total: -1.23 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -2.15 Total: -84.43 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.55 Total: -46.92 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -82.62 5.17 -77.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729521.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.678 kcal (2) G-P(sol) polarization free energy of solvation -82.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds