Wall clock time and date at job start Tue Mar 31 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38392 * 120.11745 * 2 1 4 4 C 1.37698 * 119.97688 * 179.97438 * 3 2 1 5 5 C 1.38919 * 120.78154 * 359.62126 * 4 3 2 6 6 C 1.39238 * 118.88502 * 0.58071 * 5 4 3 7 7 C 1.37972 * 120.23972 * 359.61396 * 6 5 4 8 8 C 1.50700 * 119.83050 * 180.02562 * 7 6 5 9 9 O 1.36145 * 111.21399 * 181.06563 * 5 4 3 10 10 C 1.43782 * 109.19896 * 340.64259 * 9 5 4 11 11 H 1.09000 * 110.74502 * 146.22290 * 10 9 5 12 12 C 1.50698 * 110.90855 * 269.50368 * 10 9 5 13 13 O 1.21283 * 119.99971 * 4.04243 * 12 10 9 14 14 N 1.34779 * 120.00114 * 184.04307 * 12 10 9 15 15 C 1.46497 * 119.99699 * 4.48649 * 14 12 10 16 16 C 1.46499 * 120.00250 * 184.48371 * 14 12 10 17 17 C 1.50698 * 109.46810 * 90.00037 * 16 14 12 18 18 H 1.07996 * 120.00500 * 0.02562 * 17 16 14 19 19 C 1.37885 * 119.99649 * 180.02562 * 17 16 14 20 20 N 1.31507 * 120.00013 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99760 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47518 * 59.99917 * 21 19 17 23 23 H 1.48505 * 109.47295 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47348 * 299.99932 * 21 19 17 25 25 C 1.51643 * 132.17763 * 179.13395 * 4 3 2 26 26 H 1.09002 * 109.47165 * 270.01819 * 1 2 3 27 27 H 1.08997 * 109.47484 * 30.02123 * 1 2 3 28 28 H 1.08998 * 109.47308 * 150.02339 * 1 2 3 29 29 H 1.08002 * 120.00789 * 359.97438 * 3 2 1 30 30 H 1.08008 * 119.88280 * 179.63067 * 6 5 4 31 31 H 1.09001 * 109.46877 * 89.99271 * 8 7 6 32 32 H 1.08996 * 109.47108 * 209.99257 * 8 7 6 33 33 H 1.09003 * 109.46683 * 329.99933 * 8 7 6 34 34 H 1.09008 * 109.47162 * 84.43497 * 15 14 12 35 35 H 1.08999 * 109.47276 * 204.43620 * 15 14 12 36 36 H 1.08997 * 109.47568 * 324.43506 * 15 14 12 37 37 H 1.08996 * 109.47190 * 210.00407 * 16 14 12 38 38 H 1.09008 * 109.46966 * 330.00025 * 16 14 12 39 39 H 0.97007 * 119.99960 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.93813 * 313.73906 * 25 4 3 41 41 H 1.09006 * 110.93424 * 77.37082 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1937 0.0005 5 6 4.2864 -0.0015 0.0090 6 6 3.5803 -1.2016 0.0045 7 6 2.2006 -1.1960 0.0000 8 6 1.4457 -2.5002 -0.0041 9 8 5.6292 0.2215 0.0315 10 6 5.8931 1.5640 -0.4107 11 1 6.7552 1.9799 0.1107 12 6 6.1019 1.6075 -1.9025 13 8 5.9631 0.6004 -2.5639 14 7 6.4430 2.7655 -2.5018 15 6 6.7068 3.9585 -1.6935 16 6 6.5501 2.8313 -3.9614 17 6 5.2150 3.2142 -4.5461 18 1 4.3713 3.3914 -3.8957 19 6 5.0707 3.3385 -5.9118 20 7 6.0981 3.1233 -6.7038 21 14 3.4160 3.8139 -6.6366 22 1 3.0080 5.1413 -6.1105 23 1 3.5244 3.8804 -8.1162 24 1 2.4001 2.7984 -6.2594 25 6 4.5993 2.3149 -0.0163 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6634 2.1336 -0.0004 30 1 4.1145 -2.1403 0.0049 31 1 1.2604 -2.8161 1.0225 32 1 0.4951 -2.3682 -0.5208 33 1 2.0357 -3.2598 -0.5171 34 1 7.7410 3.9429 -1.3494 35 1 6.5380 4.8507 -2.2965 36 1 6.0378 3.9697 -0.8330 37 1 7.2953 3.5771 -4.2378 38 1 6.8502 1.8572 -4.3479 39 1 5.9967 3.2111 -7.6646 40 1 4.3414 3.0654 -0.7635 41 1 4.6966 2.7679 0.9704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079729524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:46 Heat of formation + Delta-G solvation = -42.036525 kcal Electronic energy + Delta-G solvation = -23286.220862 eV Core-core repulsion = 19938.553539 eV Total energy + Delta-G solvation = -3347.667323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.29277 -38.86989 -37.62746 -34.91413 -33.22303 -32.65504 -31.90799 -30.85568 -28.04226 -26.89103 -26.60344 -25.71333 -23.61566 -22.30875 -21.93181 -20.45446 -18.86425 -17.16426 -16.67653 -16.53258 -16.37875 -15.19943 -15.05216 -14.87940 -14.39993 -14.27989 -13.95781 -13.65586 -13.48678 -13.08220 -12.79526 -12.70239 -12.54436 -12.37092 -12.14215 -12.04938 -11.97690 -11.88895 -11.38447 -11.26787 -11.20706 -10.94954 -10.87768 -10.62034 -10.56700 -10.18700 -9.68265 -8.97495 -8.59352 -8.45620 -7.75674 -7.71366 -6.06691 -4.11888 1.39293 1.51437 3.11169 3.29528 3.32391 3.34626 3.40351 3.82664 3.91916 4.41598 4.47690 4.61646 4.88108 4.92098 4.96994 5.12309 5.18005 5.27566 5.27793 5.41120 5.48741 5.53506 5.60078 5.64061 5.65991 5.75361 5.82311 5.83979 5.87040 6.00906 6.13394 6.24249 6.39054 6.55471 6.66618 6.77754 6.98942 7.33612 7.40581 7.47864 7.89057 8.19508 8.30400 8.84230 8.99416 9.53103 11.01413 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.005350 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.403762 B = 5232.130666 C = 6258.030500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.171 4.171 5 C 0.119 3.881 6 C -0.132 4.132 7 C -0.055 4.055 8 C -0.114 4.114 9 O -0.279 6.279 10 C 0.063 3.937 11 H 0.132 0.868 12 C 0.491 3.509 13 O -0.521 6.521 14 N -0.597 5.597 15 C 0.075 3.925 16 C 0.245 3.755 17 C -0.529 4.529 18 H 0.056 0.944 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 C -0.098 4.098 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.035 0.965 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.101 0.899 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 -2.482 17.160 18.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.172 4.172 5 C 0.073 3.927 6 C -0.151 4.151 7 C -0.056 4.056 8 C -0.170 4.170 9 O -0.192 6.192 10 C 0.003 3.997 11 H 0.150 0.850 12 C 0.275 3.725 13 O -0.397 6.397 14 N -0.331 5.331 15 C -0.069 4.069 16 C 0.127 3.873 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.725 3.275 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.136 4.136 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.529 -3.168 16.642 18.156 hybrid contribution -0.715 0.640 -0.605 1.134 sum -7.243 -2.528 16.037 17.778 Atomic orbital electron populations 1.20740 0.91069 1.02787 1.01846 1.19532 0.95892 0.92149 1.04553 1.20080 0.91614 0.97821 0.98668 1.20657 0.94662 0.94332 1.07578 1.19463 0.83107 0.94461 0.95642 1.20026 0.92728 0.95688 1.06619 1.19369 0.92272 0.95148 0.98764 1.20841 1.00105 0.93879 1.02223 1.86872 1.20326 1.31910 1.80051 1.23394 1.00058 0.81450 0.94795 0.85012 1.20458 0.78807 0.84424 0.88796 1.90705 1.50083 1.33612 1.65275 1.48114 1.66927 1.08277 1.09824 1.21800 0.99519 0.89807 0.95784 1.19334 0.97244 0.98780 0.71990 1.21369 0.96117 1.47383 0.91862 0.92570 1.24924 0.96925 0.95253 0.96876 1.69920 1.30072 1.49061 1.04182 0.86572 0.84082 0.78952 0.77928 1.20199 1.21087 1.20148 1.21776 0.91018 0.97301 1.03467 0.91583 0.91762 0.91298 0.85896 0.85574 0.91118 0.90954 0.91426 0.93429 0.90185 0.92414 0.94749 0.93732 0.92602 0.88045 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.61 36.00 0.35 -0.74 16 2 C -0.12 -1.64 5.89 -104.56 -0.62 -2.26 16 3 C -0.06 -0.93 9.70 -39.72 -0.39 -1.32 16 4 C -0.17 -2.80 6.26 -104.10 -0.65 -3.45 16 5 C 0.12 2.11 6.82 -38.96 -0.27 1.84 16 6 C -0.13 -2.11 9.71 -39.31 -0.38 -2.49 16 7 C -0.06 -0.77 5.87 -104.71 -0.61 -1.38 16 8 C -0.11 -1.16 9.59 36.01 0.35 -0.82 16 9 O -0.28 -5.15 10.45 -39.13 -0.41 -5.56 16 10 C 0.06 1.04 3.14 -26.99 -0.08 0.96 16 11 H 0.13 1.66 7.84 -51.93 -0.41 1.25 16 12 C 0.49 10.71 6.90 -10.98 -0.08 10.63 16 13 O -0.52 -14.08 16.02 -13.37 -0.21 -14.29 16 14 N -0.60 -12.69 2.86 -182.96 -0.52 -13.22 16 15 C 0.07 1.13 9.85 59.85 0.59 1.72 16 16 C 0.25 6.47 5.17 -5.20 -0.03 6.44 16 17 C -0.53 -15.03 9.39 -34.44 -0.32 -15.35 16 18 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 21 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C -0.10 -1.40 5.44 -26.52 -0.14 -1.55 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 28 H 0.07 0.63 5.94 -51.93 -0.31 0.32 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.65 5.94 -51.93 -0.31 0.34 16 33 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 35 H 0.08 1.23 8.03 -51.93 -0.42 0.82 16 36 H 0.06 0.69 5.10 -51.93 -0.26 0.43 16 37 H 0.03 0.90 8.07 -51.93 -0.42 0.49 16 38 H 0.04 1.34 7.37 -51.92 -0.38 0.96 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.10 1.51 6.84 -51.93 -0.36 1.15 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 338.37 15.07 5.10 5.10 Total: -1.00 -35.42 338.37 -8.50 -43.92 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -5.78 Total: -0.88 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -2.39 Total: -6.06 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.21 Total: -39.17 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.62 Total: -19.85 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.42 -8.50 -43.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.888 kcal (2) G-P(sol) polarization free energy of solvation -35.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds