Wall clock time and date at job start Tue Mar 31 2020 05:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38392 * 120.11745 * 2 1 4 4 C 1.37698 * 119.97688 * 179.97438 * 3 2 1 5 5 C 1.38919 * 120.78154 * 359.62126 * 4 3 2 6 6 C 1.39238 * 118.88502 * 0.58071 * 5 4 3 7 7 C 1.37972 * 120.23972 * 359.61396 * 6 5 4 8 8 C 1.50700 * 119.83050 * 180.02562 * 7 6 5 9 9 O 1.36145 * 111.21399 * 181.06563 * 5 4 3 10 10 C 1.43782 * 109.19896 * 340.64259 * 9 5 4 11 11 H 1.09000 * 110.74502 * 146.22290 * 10 9 5 12 12 C 1.50698 * 110.90855 * 269.50368 * 10 9 5 13 13 O 1.21283 * 119.99971 * 4.04243 * 12 10 9 14 14 N 1.34779 * 120.00114 * 184.04307 * 12 10 9 15 15 C 1.46497 * 119.99699 * 4.48649 * 14 12 10 16 16 C 1.46499 * 120.00250 * 184.48371 * 14 12 10 17 17 C 1.50698 * 109.46810 * 90.00037 * 16 14 12 18 18 H 1.07996 * 120.00500 * 0.02562 * 17 16 14 19 19 C 1.37885 * 119.99649 * 180.02562 * 17 16 14 20 20 N 1.31507 * 120.00013 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99760 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47518 * 59.99917 * 21 19 17 23 23 H 1.48505 * 109.47295 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.47348 * 299.99932 * 21 19 17 25 25 C 1.51643 * 132.17763 * 179.13395 * 4 3 2 26 26 H 1.09002 * 109.47165 * 270.01819 * 1 2 3 27 27 H 1.08997 * 109.47484 * 30.02123 * 1 2 3 28 28 H 1.08998 * 109.47308 * 150.02339 * 1 2 3 29 29 H 1.08002 * 120.00789 * 359.97438 * 3 2 1 30 30 H 1.08008 * 119.88280 * 179.63067 * 6 5 4 31 31 H 1.09001 * 109.46877 * 89.99271 * 8 7 6 32 32 H 1.08996 * 109.47108 * 209.99257 * 8 7 6 33 33 H 1.09003 * 109.46683 * 329.99933 * 8 7 6 34 34 H 1.09008 * 109.47162 * 84.43497 * 15 14 12 35 35 H 1.08999 * 109.47276 * 204.43620 * 15 14 12 36 36 H 1.08997 * 109.47568 * 324.43506 * 15 14 12 37 37 H 1.08996 * 109.47190 * 210.00407 * 16 14 12 38 38 H 1.09008 * 109.46966 * 330.00025 * 16 14 12 39 39 H 0.97007 * 119.99960 * 180.02562 * 20 19 17 40 40 H 1.09000 * 110.93813 * 313.73906 * 25 4 3 41 41 H 1.09006 * 110.93424 * 77.37082 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5784 1.1937 0.0005 5 6 4.2864 -0.0015 0.0090 6 6 3.5803 -1.2016 0.0045 7 6 2.2006 -1.1960 0.0000 8 6 1.4457 -2.5002 -0.0041 9 8 5.6292 0.2215 0.0315 10 6 5.8931 1.5640 -0.4107 11 1 6.7552 1.9799 0.1107 12 6 6.1019 1.6075 -1.9025 13 8 5.9631 0.6004 -2.5639 14 7 6.4430 2.7655 -2.5018 15 6 6.7068 3.9585 -1.6935 16 6 6.5501 2.8313 -3.9614 17 6 5.2150 3.2142 -4.5461 18 1 4.3713 3.3914 -3.8957 19 6 5.0707 3.3385 -5.9118 20 7 6.0981 3.1233 -6.7038 21 14 3.4160 3.8139 -6.6366 22 1 3.0080 5.1413 -6.1105 23 1 3.5244 3.8804 -8.1162 24 1 2.4001 2.7984 -6.2594 25 6 4.5993 2.3149 -0.0163 26 1 -0.3633 0.0003 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6634 2.1336 -0.0004 30 1 4.1145 -2.1403 0.0049 31 1 1.2604 -2.8161 1.0225 32 1 0.4951 -2.3682 -0.5208 33 1 2.0357 -3.2598 -0.5171 34 1 7.7410 3.9429 -1.3494 35 1 6.5380 4.8507 -2.2965 36 1 6.0378 3.9697 -0.8330 37 1 7.2953 3.5771 -4.2378 38 1 6.8502 1.8572 -4.3479 39 1 5.9967 3.2111 -7.6646 40 1 4.3414 3.0654 -0.7635 41 1 4.6966 2.7679 0.9704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079729524.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:43 Heat of formation + Delta-G solvation = -64.023091 kcal Electronic energy + Delta-G solvation = -23287.174271 eV Core-core repulsion = 19938.553539 eV Total energy + Delta-G solvation = -3348.620732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.55526 -40.34792 -38.91643 -36.71120 -34.88922 -34.21206 -32.98157 -32.07082 -29.83945 -28.00933 -27.73780 -27.19995 -25.27729 -23.77592 -23.09359 -21.65629 -20.38367 -18.72370 -18.53564 -17.98769 -17.72342 -16.87881 -16.47177 -16.20265 -16.05383 -15.58550 -15.02824 -14.90171 -14.70902 -14.41012 -14.05632 -13.94947 -13.88527 -13.58176 -13.53897 -13.40394 -13.19647 -13.08577 -12.90221 -12.76801 -12.64156 -12.52700 -12.23410 -12.17571 -12.02106 -11.78490 -11.67950 -10.67349 -10.61651 -9.70342 -9.50502 -8.92546 -8.25653 -6.40772 0.27905 0.36146 1.33673 1.38466 1.45354 1.57854 1.96314 2.34535 2.44209 2.69956 3.04214 3.34017 3.42537 3.52928 3.88153 3.94800 4.10193 4.14759 4.27721 4.37957 4.45687 4.59697 4.63662 4.68831 4.70600 4.75828 4.80569 4.92895 4.93651 4.97588 5.02354 5.13939 5.17947 5.24261 5.34619 5.39986 5.50049 5.63326 5.71764 5.78421 6.01168 6.17801 6.60952 6.68873 7.20768 7.35465 8.81646 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014464 B = 0.005350 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1935.403762 B = 5232.130666 C = 6258.030500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.124 4.124 3 C -0.077 4.077 4 C -0.189 4.189 5 C 0.077 3.923 6 C -0.155 4.155 7 C -0.063 4.063 8 C -0.112 4.112 9 O -0.299 6.299 10 C 0.070 3.930 11 H 0.178 0.822 12 C 0.479 3.521 13 O -0.590 6.590 14 N -0.600 5.600 15 C 0.066 3.934 16 C 0.258 3.742 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.008 3.992 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.255 1.255 23 H -0.278 1.278 24 H -0.280 1.280 25 C -0.088 4.088 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.126 0.874 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.030 0.970 38 H -0.007 1.007 39 H 0.268 0.732 40 H 0.096 0.904 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 -0.952 19.113 21.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.124 4.124 3 C -0.095 4.095 4 C -0.190 4.190 5 C 0.032 3.968 6 C -0.173 4.173 7 C -0.063 4.063 8 C -0.168 4.168 9 O -0.212 6.212 10 C 0.011 3.989 11 H 0.195 0.805 12 C 0.266 3.734 13 O -0.471 6.471 14 N -0.332 5.332 15 C -0.075 4.075 16 C 0.137 3.863 17 C -0.582 4.582 18 H 0.072 0.928 19 C -0.191 4.191 20 N -0.568 5.568 21 Si 0.790 3.210 22 H -0.179 1.179 23 H -0.203 1.203 24 H -0.206 1.206 25 C -0.125 4.125 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.163 0.837 30 H 0.144 0.856 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.048 0.952 38 H 0.011 0.989 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.844 -1.590 18.644 20.696 hybrid contribution 0.015 0.110 -1.202 1.207 sum -8.828 -1.480 17.442 19.605 Atomic orbital electron populations 1.20824 0.88326 1.03638 1.03457 1.20055 0.97930 0.91677 1.02710 1.20486 0.91295 0.99300 0.98421 1.21034 0.95708 0.94491 1.07783 1.19873 0.83125 0.95850 0.97958 1.20370 0.94040 0.95563 1.07374 1.19826 0.91664 0.97122 0.97719 1.20922 1.00172 0.91960 1.03776 1.86838 1.21198 1.33065 1.80135 1.23564 1.03114 0.81699 0.90551 0.80494 1.21587 0.77163 0.83303 0.91297 1.90659 1.53006 1.36009 1.67436 1.48109 1.66370 1.10441 1.08291 1.22179 1.02493 0.86846 0.95989 1.18808 0.96404 0.95509 0.75566 1.21634 0.96685 1.47436 0.92414 0.92750 1.25866 1.00886 0.95021 0.97324 1.70046 1.32341 1.49816 1.04559 0.85494 0.78886 0.79250 0.77381 1.17947 1.20256 1.20584 1.21864 0.88768 0.96253 1.05639 0.89442 0.91214 0.90171 0.83683 0.85614 0.89006 0.89403 0.91554 0.90277 0.90624 0.88580 0.95216 0.98912 0.92346 0.88565 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.81 9.61 71.24 0.68 -1.13 16 2 C -0.12 -3.13 5.89 -19.82 -0.12 -3.25 16 3 C -0.08 -2.13 9.70 22.18 0.22 -1.91 16 4 C -0.19 -5.98 6.26 -19.53 -0.12 -6.11 16 5 C 0.08 2.76 6.82 22.67 0.15 2.92 16 6 C -0.15 -5.08 9.71 22.45 0.22 -4.86 16 7 C -0.06 -1.70 5.87 -19.92 -0.12 -1.82 16 8 C -0.11 -2.09 9.59 71.24 0.68 -1.40 16 9 O -0.30 -11.17 10.45 -77.10 -0.81 -11.98 16 10 C 0.07 2.23 3.14 30.43 0.10 2.32 16 11 H 0.18 3.87 7.84 -2.39 -0.02 3.85 16 12 C 0.48 21.35 6.90 87.66 0.60 21.96 16 13 O -0.59 -33.84 16.02 15.06 0.24 -33.60 16 14 N -0.60 -25.71 2.86 -851.13 -2.43 -28.14 16 15 C 0.07 1.85 9.85 127.77 1.26 3.11 16 16 C 0.26 14.22 5.17 85.63 0.44 14.66 16 17 C -0.54 -31.58 9.39 25.60 0.24 -31.34 16 18 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 19 C 0.01 0.48 5.46 84.66 0.46 0.94 16 20 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 21 Si 0.97 45.10 29.54 68.60 2.03 47.13 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 25 C -0.09 -2.29 5.44 30.73 0.17 -2.13 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 28 H 0.08 1.19 5.94 -2.39 -0.01 1.18 16 29 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.13 3.88 8.06 -2.91 -0.02 3.86 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.35 5.94 -2.39 -0.01 1.34 16 33 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 34 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.07 2.20 8.03 -2.39 -0.02 2.18 16 36 H 0.10 1.95 5.10 -2.39 -0.01 1.94 16 37 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 38 H -0.01 -0.47 7.37 -2.38 -0.02 -0.49 16 39 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 40 H 0.10 2.61 6.84 -2.39 -0.02 2.59 16 41 H 0.15 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -83.19 338.37 5.22 -77.97 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 1.03 Total: 13.21 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 4.87 Total: -8.04 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -2.15 Total: -84.69 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.56 Total: -45.57 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -83.19 5.22 -77.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079729524.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.948 kcal (2) G-P(sol) polarization free energy of solvation -83.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds