Wall clock time and date at job start Tue Mar 31 2020 06:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38308 * 119.87545 * 2 1 4 4 C 1.37938 * 120.21312 * 180.25667 * 3 2 1 5 5 C 1.39683 * 119.96078 * 359.48942 * 4 3 2 6 6 C 1.47736 * 120.12527 * 180.27586 * 5 4 3 7 7 O 1.21595 * 119.99576 * 211.00257 * 6 5 4 8 8 N 1.34775 * 120.00175 * 31.00411 * 6 5 4 9 9 C 1.36877 * 119.99756 * 5.87313 * 8 6 5 10 10 H 1.07997 * 120.00120 * 234.45615 * 9 8 6 11 11 C 1.39048 * 119.99642 * 54.46541 * 9 8 6 12 12 N 1.31364 * 120.00549 * 7.76680 * 11 9 8 13 13 Si 1.86801 * 119.99628 * 187.77444 * 11 9 8 14 14 H 1.48502 * 109.47362 * 59.99619 * 13 11 9 15 15 H 1.48506 * 109.47099 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47140 * 299.99756 * 13 11 9 17 17 C 1.46492 * 119.99971 * 185.87809 * 8 6 5 18 18 C 1.54273 * 110.03051 * 233.52209 * 17 8 6 19 19 C 1.54963 * 104.15831 * 217.13659 * 18 17 8 20 20 C 1.54887 * 102.78130 * 37.88959 * 19 18 17 21 21 C 1.53880 * 110.03387 * 116.30888 * 17 8 6 22 22 C 1.39556 * 119.74789 * 0.25741 * 5 4 3 23 23 C 1.38478 * 119.78996 * 359.97438 * 22 5 4 24 24 O 1.35907 * 119.98188 * 180.02562 * 23 22 5 25 25 H 1.08998 * 109.47178 * 270.25503 * 1 2 3 26 26 H 1.09006 * 109.47017 * 30.25588 * 1 2 3 27 27 H 1.08996 * 109.47399 * 150.24887 * 1 2 3 28 28 H 1.08003 * 119.89194 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.02130 * 179.77255 * 4 3 2 30 30 H 0.96991 * 120.00150 * 184.98775 * 12 11 9 31 31 H 1.09004 * 110.01996 * 354.91329 * 17 8 6 32 32 H 1.08995 * 110.48474 * 335.78663 * 18 17 8 33 33 H 1.09003 * 110.48137 * 98.42531 * 18 17 8 34 34 H 1.09003 * 110.72282 * 279.57365 * 19 18 17 35 35 H 1.08999 * 110.92399 * 156.30040 * 19 18 17 36 36 H 1.08998 * 110.48853 * 203.40431 * 20 19 18 37 37 H 1.08997 * 110.59866 * 80.81372 * 20 19 18 38 38 H 1.09008 * 110.02749 * 238.56937 * 21 17 8 39 39 H 1.08994 * 110.02995 * 359.94627 * 21 17 8 40 40 H 1.08002 * 120.10561 * 179.97438 * 22 5 4 41 41 H 0.96702 * 113.99900 * 89.99681 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1993 0.0000 4 6 3.5752 1.2074 -0.0053 5 6 4.2800 0.0014 0.0000 6 6 5.7573 0.0059 0.0005 7 8 6.3681 -0.8972 -0.5379 8 7 6.4280 1.0109 0.5976 9 6 5.7458 1.9628 1.3063 10 1 5.8770 3.0086 1.0710 11 6 4.8841 1.5831 2.3294 12 7 4.8383 0.3292 2.7184 13 14 3.7914 2.8562 3.1508 14 1 2.8963 3.4687 2.1364 15 1 2.9723 2.2012 4.2022 16 1 4.6365 3.9108 3.7663 17 6 7.8869 1.0847 0.4881 18 6 8.5179 1.1843 1.8924 19 6 9.7152 2.1495 1.7024 20 6 9.1594 3.1917 0.7004 21 6 8.2949 2.3603 -0.2697 22 6 3.5832 -1.2077 0.0053 23 6 2.1984 -1.2038 0.0058 24 8 1.5159 -2.3791 0.0115 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6521 2.1324 -0.0004 29 1 4.1100 2.1457 -0.0090 30 1 4.1870 0.0504 3.3808 31 1 8.2672 0.2045 -0.0305 32 1 7.8030 1.5986 2.6032 33 1 8.8646 0.2058 2.2250 34 1 10.5708 1.6240 1.2783 35 1 9.9848 2.6256 2.6451 36 1 9.9745 3.6777 0.1641 37 1 8.5486 3.9322 1.2167 38 1 8.8738 2.0991 -1.1556 39 1 7.4073 2.9239 -0.5567 40 1 4.1223 -2.1436 0.0091 41 1 1.3187 -2.7151 0.8965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:02 Heat of formation + Delta-G solvation = -58.660324 kcal Electronic energy + Delta-G solvation = -24114.698755 eV Core-core repulsion = 20766.310570 eV Total energy + Delta-G solvation = -3348.388185 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.61080 -38.54461 -36.76248 -35.71180 -34.17931 -31.96288 -31.36038 -29.16509 -27.99034 -27.54553 -26.10986 -24.84032 -21.98934 -21.51622 -20.06432 -19.79037 -19.34554 -17.94912 -16.35737 -15.91142 -15.32085 -15.08679 -14.92075 -14.53206 -14.43718 -14.05608 -13.63831 -13.21116 -13.02468 -12.83856 -12.66908 -12.49378 -12.00875 -11.68810 -11.56324 -11.31876 -11.14633 -11.01002 -10.76236 -10.65138 -10.54954 -10.51700 -10.45133 -10.39539 -10.03861 -9.99309 -9.69125 -9.00835 -8.53231 -8.02543 -7.59813 -7.26109 -6.40271 -4.24725 1.83080 2.12428 3.09307 3.15524 3.17379 3.89654 4.03979 4.45512 4.85631 4.94623 5.02774 5.32483 5.36382 5.41327 5.46810 5.53883 5.79676 5.89028 6.04140 6.05596 6.15457 6.19616 6.28146 6.29681 6.33053 6.35375 6.41342 6.48252 6.50417 6.63148 6.68371 6.74273 6.86048 7.03468 7.13262 7.19590 7.27745 7.37974 7.44094 7.56209 7.92892 8.20155 8.59375 8.89887 9.52624 9.95929 10.63307 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.006553 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.545155 B = 4271.867714 C = 5031.927868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.113 4.113 3 C -0.137 4.137 4 C -0.062 4.062 5 C -0.042 4.042 6 C 0.555 3.445 7 O -0.604 6.604 8 N -0.441 5.441 9 C -0.347 4.347 10 H 0.082 0.918 11 C 0.064 3.936 12 N -0.847 5.847 13 Si 0.897 3.103 14 H -0.264 1.264 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.133 3.867 18 C -0.120 4.120 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.090 4.090 23 C 0.074 3.926 24 O -0.500 6.500 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.271 0.729 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.458 3.649 -0.849 4.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.114 4.114 3 C -0.156 4.156 4 C -0.081 4.081 5 C -0.045 4.045 6 C 0.346 3.654 7 O -0.490 6.490 8 N -0.160 5.160 9 C -0.475 4.475 10 H 0.100 0.900 11 C -0.146 4.146 12 N -0.480 5.480 13 Si 0.723 3.277 14 H -0.189 1.189 15 H -0.209 1.209 16 H -0.198 1.198 17 C 0.029 3.971 18 C -0.158 4.158 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.166 4.166 22 C -0.109 4.109 23 C 0.030 3.970 24 O -0.309 6.309 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.133 0.867 29 H 0.167 0.833 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.140 0.860 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.143 3.149 -1.530 4.105 hybrid contribution -0.689 0.465 1.419 1.644 sum -2.833 3.615 -0.112 4.594 Atomic orbital electron populations 1.20615 0.91829 1.02313 1.01498 1.20086 0.95747 0.92844 1.02748 1.20805 0.94523 0.96330 1.03912 1.21862 0.92964 0.99488 0.93741 1.19506 0.93914 0.92521 0.98533 1.18211 0.86738 0.82519 0.77958 1.90591 1.70079 1.37932 1.50422 1.43126 1.03056 1.24543 1.45246 1.18946 1.25687 0.89049 1.13849 0.90001 1.25553 0.98252 0.96190 0.94614 1.69808 1.32862 1.16003 1.29360 0.86479 0.80546 0.81067 0.79648 1.18922 1.20883 1.19771 1.21588 0.83446 0.96804 0.95228 1.22565 0.96510 0.98188 0.98519 1.22452 0.97838 0.97272 0.98522 1.22251 0.98298 0.97701 0.97124 1.22435 0.99469 0.97202 0.97514 1.21262 0.92537 0.98381 0.98760 1.17972 0.89481 0.84357 1.05209 1.84772 1.76359 1.36989 1.32787 0.92102 0.92099 0.91477 0.86687 0.83325 0.91851 0.90369 0.89245 0.93046 0.92514 0.92418 0.92948 0.91697 0.92840 0.91169 0.85982 0.76751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.78 36.00 0.35 -1.15 16 2 C -0.11 -2.06 5.90 -104.38 -0.62 -2.68 16 3 C -0.14 -2.59 9.67 -39.67 -0.38 -2.98 16 4 C -0.06 -1.32 6.59 -39.15 -0.26 -1.58 16 5 C -0.04 -0.98 3.97 -104.98 -0.42 -1.40 16 6 C 0.56 14.29 6.68 -12.38 -0.08 14.20 16 7 O -0.60 -16.94 16.10 5.28 0.09 -16.85 16 8 N -0.44 -10.50 2.34 -107.64 -0.25 -10.76 16 9 C -0.35 -8.04 4.42 -15.00 -0.07 -8.11 16 10 H 0.08 1.83 7.42 -52.49 -0.39 1.44 16 11 C 0.06 1.49 3.23 -17.45 -0.06 1.44 16 12 N -0.85 -21.50 11.72 55.50 0.65 -20.85 16 13 Si 0.90 18.58 28.89 -169.99 -4.91 13.67 16 14 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 15 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 17 C 0.13 2.85 3.29 -66.81 -0.22 2.63 16 18 C -0.12 -2.37 6.40 -25.03 -0.16 -2.53 16 19 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 20 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 21 C -0.13 -2.29 6.30 -25.61 -0.16 -2.45 16 22 C -0.09 -2.01 9.54 -39.00 -0.37 -2.38 16 23 C 0.07 1.44 6.67 -39.27 -0.26 1.18 16 24 O -0.50 -8.43 12.53 -19.45 -0.24 -8.68 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 27 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 28 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 29 H 0.15 3.16 5.69 -52.49 -0.30 2.86 16 30 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 31 H 0.08 1.80 6.96 -51.93 -0.36 1.44 16 32 H 0.09 1.98 6.86 -51.93 -0.36 1.63 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.89 8.14 -51.92 -0.42 0.46 16 39 H 0.07 1.31 7.22 -51.93 -0.37 0.94 16 40 H 0.12 2.82 7.94 -52.49 -0.42 2.41 16 41 H 0.38 4.72 9.06 45.56 0.41 5.14 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -28.52 329.19 -7.87 -36.38 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.11 Total: 12.00 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -3.04 Total: -9.89 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.40 Total: -31.61 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.16 Total: -25.53 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -4.91 Total: 13.67 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.52 -7.87 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.276 kcal (2) G-P(sol) polarization free energy of solvation -28.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds