Wall clock time and date at job start Tue Mar 31 2020 06:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38308 * 119.87545 * 2 1 4 4 C 1.37938 * 120.21312 * 180.25667 * 3 2 1 5 5 C 1.39683 * 119.96078 * 359.48942 * 4 3 2 6 6 C 1.47736 * 120.12527 * 180.27586 * 5 4 3 7 7 O 1.21595 * 119.99576 * 211.00257 * 6 5 4 8 8 N 1.34775 * 120.00175 * 31.00411 * 6 5 4 9 9 C 1.36877 * 119.99756 * 5.87313 * 8 6 5 10 10 H 1.07997 * 120.00120 * 234.45615 * 9 8 6 11 11 C 1.39048 * 119.99642 * 54.46541 * 9 8 6 12 12 N 1.31364 * 120.00549 * 7.76680 * 11 9 8 13 13 Si 1.86801 * 119.99628 * 187.77444 * 11 9 8 14 14 H 1.48502 * 109.47362 * 59.99619 * 13 11 9 15 15 H 1.48506 * 109.47099 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47140 * 299.99756 * 13 11 9 17 17 C 1.46492 * 119.99971 * 185.87809 * 8 6 5 18 18 C 1.54273 * 110.03051 * 233.52209 * 17 8 6 19 19 C 1.54963 * 104.15831 * 217.13659 * 18 17 8 20 20 C 1.54887 * 102.78130 * 37.88959 * 19 18 17 21 21 C 1.53880 * 110.03387 * 116.30888 * 17 8 6 22 22 C 1.39556 * 119.74789 * 0.25741 * 5 4 3 23 23 C 1.38478 * 119.78996 * 359.97438 * 22 5 4 24 24 O 1.35907 * 119.98188 * 180.02562 * 23 22 5 25 25 H 1.08998 * 109.47178 * 270.25503 * 1 2 3 26 26 H 1.09006 * 109.47017 * 30.25588 * 1 2 3 27 27 H 1.08996 * 109.47399 * 150.24887 * 1 2 3 28 28 H 1.08003 * 119.89194 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.02130 * 179.77255 * 4 3 2 30 30 H 0.96991 * 120.00150 * 184.98775 * 12 11 9 31 31 H 1.09004 * 110.01996 * 354.91329 * 17 8 6 32 32 H 1.08995 * 110.48474 * 335.78663 * 18 17 8 33 33 H 1.09003 * 110.48137 * 98.42531 * 18 17 8 34 34 H 1.09003 * 110.72282 * 279.57365 * 19 18 17 35 35 H 1.08999 * 110.92399 * 156.30040 * 19 18 17 36 36 H 1.08998 * 110.48853 * 203.40431 * 20 19 18 37 37 H 1.08997 * 110.59866 * 80.81372 * 20 19 18 38 38 H 1.09008 * 110.02749 * 238.56937 * 21 17 8 39 39 H 1.08994 * 110.02995 * 359.94627 * 21 17 8 40 40 H 1.08002 * 120.10561 * 179.97438 * 22 5 4 41 41 H 0.96702 * 113.99900 * 89.99681 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1993 0.0000 4 6 3.5752 1.2074 -0.0053 5 6 4.2800 0.0014 0.0000 6 6 5.7573 0.0059 0.0005 7 8 6.3681 -0.8972 -0.5379 8 7 6.4280 1.0109 0.5976 9 6 5.7458 1.9628 1.3063 10 1 5.8770 3.0086 1.0710 11 6 4.8841 1.5831 2.3294 12 7 4.8383 0.3292 2.7184 13 14 3.7914 2.8562 3.1508 14 1 2.8963 3.4687 2.1364 15 1 2.9723 2.2012 4.2022 16 1 4.6365 3.9108 3.7663 17 6 7.8869 1.0847 0.4881 18 6 8.5179 1.1843 1.8924 19 6 9.7152 2.1495 1.7024 20 6 9.1594 3.1917 0.7004 21 6 8.2949 2.3603 -0.2697 22 6 3.5832 -1.2077 0.0053 23 6 2.1984 -1.2038 0.0058 24 8 1.5159 -2.3791 0.0115 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8877 -0.5178 27 1 -0.3634 -0.8922 -0.5099 28 1 1.6521 2.1324 -0.0004 29 1 4.1100 2.1457 -0.0090 30 1 4.1870 0.0504 3.3808 31 1 8.2672 0.2045 -0.0305 32 1 7.8030 1.5986 2.6032 33 1 8.8646 0.2058 2.2250 34 1 10.5708 1.6240 1.2783 35 1 9.9848 2.6256 2.6451 36 1 9.9745 3.6777 0.1641 37 1 8.5486 3.9322 1.2167 38 1 8.8738 2.0991 -1.1556 39 1 7.4073 2.9239 -0.5567 40 1 4.1223 -2.1436 0.0091 41 1 1.3187 -2.7151 0.8965 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:01 Heat of formation + Delta-G solvation = -75.769685 kcal Electronic energy + Delta-G solvation = -24115.440672 eV Core-core repulsion = 20766.310570 eV Total energy + Delta-G solvation = -3349.130102 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.30971 -40.13465 -38.37529 -37.30200 -35.93812 -33.44956 -33.15988 -30.73090 -29.46972 -29.06263 -27.65161 -26.60034 -23.56977 -23.08375 -21.57605 -21.34749 -21.04418 -19.53598 -18.03241 -17.62933 -17.02724 -16.66942 -16.52347 -16.04355 -16.00250 -15.65790 -15.26774 -14.87261 -14.49125 -14.24637 -14.19867 -14.09467 -13.42154 -13.19504 -13.03626 -12.94288 -12.85283 -12.57263 -12.35332 -12.20541 -12.13808 -12.06248 -11.88325 -11.83172 -11.53307 -11.40242 -11.31701 -10.78710 -10.42958 -9.63337 -9.29210 -9.02119 -8.22013 -6.11807 0.23143 0.53125 1.47434 1.48557 1.54676 2.13088 2.34181 2.78834 3.10224 3.26442 3.48018 3.86346 3.91266 4.00624 4.07485 4.17907 4.37521 4.46737 4.60476 4.68342 4.71891 4.78362 4.82652 4.85403 4.90882 4.92428 4.95690 5.07022 5.11603 5.15870 5.25071 5.33380 5.40352 5.46609 5.54814 5.57063 5.62961 5.67357 5.80004 6.04210 6.11842 6.71557 6.87680 7.06844 7.62155 8.08996 8.81721 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.006553 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.545155 B = 4271.867714 C = 5031.927868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.107 4.107 3 C -0.133 4.133 4 C -0.070 4.070 5 C -0.067 4.067 6 C 0.533 3.467 7 O -0.649 6.649 8 N -0.440 5.440 9 C -0.348 4.348 10 H 0.092 0.908 11 C 0.036 3.964 12 N -0.881 5.881 13 Si 0.947 3.053 14 H -0.241 1.241 15 H -0.293 1.293 16 H -0.268 1.268 17 C 0.119 3.881 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.107 4.107 21 C -0.121 4.121 22 C -0.116 4.116 23 C 0.079 3.921 24 O -0.500 6.500 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.267 0.733 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.096 0.904 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 6.267 -0.537 7.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C -0.150 4.150 4 C -0.088 4.088 5 C -0.070 4.070 6 C 0.324 3.676 7 O -0.539 6.539 8 N -0.157 5.157 9 C -0.475 4.475 10 H 0.110 0.890 11 C -0.171 4.171 12 N -0.516 5.516 13 Si 0.770 3.230 14 H -0.164 1.164 15 H -0.219 1.219 16 H -0.193 1.193 17 C 0.015 3.985 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.144 4.144 21 C -0.159 4.159 22 C -0.136 4.136 23 C 0.035 3.965 24 O -0.312 6.312 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.114 0.886 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.707 5.801 -1.208 6.990 hybrid contribution -0.217 -0.442 1.321 1.410 sum -3.924 5.358 0.113 6.643 Atomic orbital electron populations 1.20693 0.88297 1.03775 1.03053 1.20532 0.98169 0.91699 1.00355 1.21174 0.93498 0.98100 1.02276 1.21816 0.94206 0.98240 0.94579 1.19452 0.92757 0.93927 1.00869 1.18823 0.88158 0.82642 0.77947 1.90527 1.71183 1.39640 1.52563 1.43354 1.04099 1.24039 1.44234 1.19163 1.25753 0.89100 1.13508 0.89008 1.26150 0.98946 0.97296 0.94700 1.69956 1.33501 1.18074 1.30019 0.85696 0.79341 0.79027 0.78944 1.16431 1.21888 1.19308 1.21848 0.82434 0.97650 0.96552 1.22471 0.97765 0.98540 0.96671 1.22421 0.96293 0.96344 0.99861 1.22225 0.98701 0.97092 0.96402 1.22366 0.99821 0.95509 0.98241 1.21251 0.94165 0.97183 1.00979 1.17992 0.88423 0.85926 1.04205 1.84709 1.75602 1.36187 1.34672 0.90290 0.89823 0.90919 0.83285 0.83683 0.92373 0.93199 0.91744 0.94549 0.90869 0.90443 0.89628 0.91683 0.91615 0.92070 0.88569 0.74272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 9.78 71.23 0.70 -1.75 16 2 C -0.11 -3.60 5.90 -19.71 -0.12 -3.72 16 3 C -0.13 -4.66 9.67 22.22 0.21 -4.45 16 4 C -0.07 -2.96 6.59 22.55 0.15 -2.81 16 5 C -0.07 -3.29 3.97 -20.10 -0.08 -3.37 16 6 C 0.53 29.10 6.68 86.75 0.58 29.68 16 7 O -0.65 -39.31 16.10 -4.01 -0.06 -39.38 16 8 N -0.44 -21.87 2.34 -612.72 -1.44 -23.31 16 9 C -0.35 -16.27 4.42 84.10 0.37 -15.90 16 10 H 0.09 4.06 7.42 -2.91 -0.02 4.04 16 11 C 0.04 1.68 3.23 84.96 0.27 1.95 16 12 N -0.88 -45.99 11.72 21.68 0.25 -45.74 16 13 Si 0.95 36.80 28.89 68.60 1.98 38.78 16 14 H -0.24 -8.42 7.11 99.48 0.71 -7.71 16 15 H -0.29 -11.82 7.11 99.48 0.71 -11.11 16 16 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 17 C 0.12 5.27 3.29 45.72 0.15 5.43 16 18 C -0.12 -4.71 6.40 31.70 0.20 -4.50 16 19 C -0.11 -3.31 6.91 31.91 0.22 -3.09 16 20 C -0.11 -3.03 6.83 31.67 0.22 -2.82 16 21 C -0.12 -4.27 6.30 31.32 0.20 -4.08 16 22 C -0.12 -5.43 9.54 22.65 0.22 -5.21 16 23 C 0.08 3.04 6.67 22.47 0.15 3.19 16 24 O -0.50 -16.25 12.53 -92.51 -1.16 -17.41 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.67 8.09 -2.38 -0.02 1.65 16 27 H 0.07 1.70 7.52 -2.39 -0.02 1.68 16 28 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.15 6.10 5.69 -2.91 -0.02 6.09 16 30 H 0.27 13.56 8.31 -92.72 -0.77 12.78 16 31 H 0.05 2.46 6.96 -2.39 -0.02 2.44 16 32 H 0.06 2.93 6.86 -2.39 -0.02 2.91 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.06 2.26 7.22 -2.39 -0.02 2.24 16 40 H 0.10 4.85 7.94 -2.91 -0.02 4.82 16 41 H 0.40 9.35 9.06 -74.06 -0.67 8.68 16 Total: -1.00 -65.70 329.19 3.39 -62.31 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.37 Total: 36.20 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 3.44 Total: -11.45 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.18 Total: -69.05 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -1.22 Total: -56.79 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 1.98 Total: 38.78 kcal Total: -65.70 3.39 -62.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.462 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds