Wall clock time and date at job start Tue Mar 31 2020 06:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38561 * 119.84620 * 2 1 4 4 C 1.38072 * 120.39979 * 179.97438 * 3 2 1 5 5 C 1.38681 * 120.09275 * 0.02562 * 4 3 2 6 6 O 1.35662 * 120.15820 * 179.97438 * 5 4 3 7 7 C 1.40212 * 119.69081 * 359.97438 * 5 4 3 8 8 C 1.47434 * 120.19367 * 179.97438 * 7 5 4 9 9 O 1.21627 * 119.99895 * 69.87303 * 8 7 5 10 10 N 1.34774 * 119.99939 * 249.87237 * 8 7 5 11 11 C 1.36909 * 119.99535 * 185.97474 * 10 8 7 12 12 H 1.08004 * 120.00033 * 227.65921 * 11 10 8 13 13 C 1.39017 * 120.00297 * 47.38937 * 11 10 8 14 14 N 1.31388 * 120.00043 * 27.71729 * 13 11 10 15 15 Si 1.86798 * 120.00137 * 207.71679 * 13 11 10 16 16 H 1.48496 * 109.47142 * 5.01123 * 15 13 11 17 17 H 1.48505 * 109.46936 * 125.01065 * 15 13 11 18 18 H 1.48502 * 109.47400 * 245.00822 * 15 13 11 19 19 C 1.46494 * 120.00144 * 5.97143 * 10 8 7 20 20 C 1.54272 * 110.03090 * 243.41167 * 19 10 8 21 21 C 1.54967 * 104.15791 * 217.13472 * 20 19 10 22 22 C 1.54893 * 102.77708 * 37.89213 * 21 20 19 23 23 C 1.53880 * 110.03281 * 126.19559 * 19 10 8 24 24 C 1.37773 * 119.84775 * 180.23846 * 2 1 3 25 25 H 1.08994 * 109.47271 * 94.98100 * 1 2 3 26 26 H 1.08997 * 109.46663 * 214.98040 * 1 2 3 27 27 H 1.09003 * 109.46565 * 334.97575 * 1 2 3 28 28 H 1.07998 * 119.79963 * 359.96133 * 3 2 1 29 29 H 1.08003 * 119.95689 * 179.97438 * 4 3 2 30 30 H 0.96693 * 113.99938 * 270.02538 * 6 5 4 31 31 H 0.97002 * 119.99967 * 184.94230 * 14 13 11 32 32 H 1.08998 * 110.01919 * 4.80662 * 19 10 8 33 33 H 1.08995 * 110.48529 * 335.78311 * 20 19 10 34 34 H 1.09001 * 110.48396 * 98.43039 * 20 19 10 35 35 H 1.09002 * 110.72264 * 279.57819 * 21 20 19 36 36 H 1.09002 * 110.92341 * 156.29582 * 21 20 19 37 37 H 1.09000 * 110.48764 * 203.40252 * 22 21 20 38 38 H 1.08997 * 110.60106 * 80.81358 * 22 21 20 39 39 H 1.08997 * 110.03348 * 238.57208 * 23 19 10 40 40 H 1.09002 * 110.02869 * 359.95329 * 23 19 10 41 41 H 1.08002 * 120.04538 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1967 1.2018 0.0000 4 6 3.5773 1.2152 0.0005 5 6 4.2842 0.0221 0.0005 6 8 5.6408 0.0336 0.0005 7 6 3.5903 -1.1963 0.0005 8 6 4.3307 -2.4713 0.0000 9 8 4.9499 -2.8154 0.9887 10 7 4.3213 -3.2555 -1.0961 11 6 4.9049 -4.4933 -1.0571 12 1 5.5753 -4.7995 -1.8466 13 6 4.6391 -5.3541 0.0017 14 7 3.4964 -5.2711 0.6449 15 14 5.9064 -6.6288 0.5100 16 1 7.1461 -6.4386 -0.2850 17 1 6.2153 -6.4713 1.9540 18 1 5.3653 -7.9899 0.2652 19 6 3.6867 -2.7834 -2.3291 20 6 2.4896 -3.6882 -2.6872 21 6 2.5308 -3.7770 -4.2338 22 6 4.0493 -3.8396 -4.5329 23 6 4.6779 -2.8792 -3.5023 24 6 2.1928 -1.1950 -0.0050 25 1 -0.3633 -0.0892 -1.0237 26 1 -0.3632 -0.8420 0.5892 27 1 -0.3632 0.9312 0.4347 28 1 1.6509 2.1338 -0.0006 29 1 4.1076 2.1561 0.0001 30 1 6.0341 0.0374 -0.8828 31 1 3.3394 -5.8218 1.4278 32 1 3.3525 -1.7532 -2.2060 33 1 2.6130 -4.6768 -2.2451 34 1 1.5558 -3.2345 -2.3552 35 1 2.0849 -2.8896 -4.6831 36 1 2.0304 -4.6792 -4.5854 37 1 4.2528 -3.4968 -5.5474 38 1 4.4268 -4.8522 -4.3906 39 1 4.8240 -1.8957 -3.9489 40 1 5.6314 -3.2762 -3.1539 41 1 1.6510 -2.1293 -0.0093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:59 Heat of formation + Delta-G solvation = -55.354145 kcal Electronic energy + Delta-G solvation = -24224.503209 eV Core-core repulsion = 20876.258391 eV Total energy + Delta-G solvation = -3348.244818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -39.84387 -38.27632 -36.61749 -36.47770 -33.35882 -31.86580 -31.41122 -30.50226 -28.04137 -26.87076 -26.07376 -25.07360 -22.83460 -21.48350 -20.07594 -19.81448 -19.21040 -17.99281 -16.64646 -15.93904 -15.59708 -15.33988 -14.90552 -14.74339 -14.18655 -14.00941 -13.65298 -13.44192 -13.23005 -12.87080 -12.58817 -12.57052 -12.36471 -11.64839 -11.53018 -11.39041 -11.22543 -11.04276 -10.85926 -10.76198 -10.62415 -10.48932 -10.43518 -10.20024 -10.13685 -9.98703 -9.81357 -8.60794 -8.58408 -8.21832 -7.99804 -7.19548 -6.19926 -3.88428 1.49491 1.62860 3.31759 3.45719 3.46311 3.81860 4.18462 4.34738 4.58109 4.83867 5.06205 5.14757 5.19775 5.26729 5.33248 5.40667 5.52053 5.54928 5.74523 5.78614 5.93739 5.95149 5.98529 6.11512 6.17107 6.24002 6.24727 6.29973 6.35747 6.45085 6.47110 6.57413 6.64092 6.77690 6.85375 6.88079 6.96996 7.15143 7.26642 7.64348 8.05187 8.28609 9.02721 9.15191 9.60663 10.23346 10.86808 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.007302 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.598111 B = 3833.401512 C = 4543.262958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.149 4.149 5 C 0.121 3.879 6 O -0.487 6.487 7 C -0.108 4.108 8 C 0.527 3.473 9 O -0.538 6.538 10 N -0.437 5.437 11 C -0.341 4.341 12 H 0.079 0.921 13 C 0.084 3.916 14 N -0.836 5.836 15 Si 0.899 3.101 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.287 1.287 19 C 0.128 3.872 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.130 4.130 24 C -0.076 4.076 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.384 0.616 31 H 0.265 0.735 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.076 0.924 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.083 9.681 -8.145 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.103 4.103 3 C -0.128 4.128 4 C -0.167 4.167 5 C 0.075 3.925 6 O -0.296 6.296 7 C -0.112 4.112 8 C 0.314 3.686 9 O -0.417 6.417 10 N -0.158 5.158 11 C -0.468 4.468 12 H 0.097 0.903 13 C -0.127 4.127 14 N -0.469 5.469 15 Si 0.726 3.274 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.214 1.214 19 C 0.024 3.976 20 C -0.162 4.162 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.168 4.168 24 C -0.095 4.095 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.240 0.760 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.953 9.365 -6.913 12.650 hybrid contribution 0.552 -0.561 -0.078 0.791 sum -4.401 8.804 -6.991 12.073 Atomic orbital electron populations 1.20741 0.91201 1.02491 1.02173 1.19819 0.96074 0.92902 1.01538 1.20841 0.93419 0.97287 1.01246 1.21239 0.94437 0.97286 1.03788 1.18466 0.83049 0.91037 0.99910 1.84812 1.15720 1.96263 1.32785 1.20886 0.94371 0.95311 1.00680 1.17762 0.82920 0.82310 0.85633 1.90641 1.44318 1.73237 1.33506 1.43300 1.50159 1.14143 1.08178 1.18745 1.26054 0.90394 1.11562 0.90337 1.25195 0.94105 0.96233 0.97164 1.69959 1.20186 1.38893 1.17824 0.86395 0.82208 0.79696 0.79139 1.19418 1.20639 1.21392 1.21748 0.92318 0.96549 0.87018 1.22666 0.96879 1.02739 0.93951 1.22448 0.96194 1.00333 0.97078 1.22244 0.95571 1.00131 0.97417 1.22420 1.00473 0.98245 0.95671 1.21129 0.92472 0.98063 0.97801 0.91359 0.91456 0.91899 0.86103 0.85669 0.76011 0.92540 0.91809 0.88843 0.93149 0.92638 0.92353 0.92975 0.91493 0.93118 0.90491 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.00 36.01 0.36 -0.92 16 2 C -0.10 -1.57 5.87 -104.67 -0.61 -2.18 16 3 C -0.11 -1.53 9.66 -39.52 -0.38 -1.91 16 4 C -0.15 -2.27 9.98 -39.48 -0.39 -2.66 16 5 C 0.12 2.28 6.72 -38.68 -0.26 2.02 16 6 O -0.49 -9.07 12.95 -18.69 -0.24 -9.31 16 7 C -0.11 -2.32 3.97 -104.84 -0.42 -2.74 16 8 C 0.53 13.66 5.94 -12.52 -0.07 13.58 16 9 O -0.54 -16.58 15.83 5.25 0.08 -16.50 16 10 N -0.44 -10.63 2.43 -107.74 -0.26 -10.89 16 11 C -0.34 -9.10 7.35 -15.00 -0.11 -9.21 16 12 H 0.08 2.04 6.93 -52.48 -0.36 1.68 16 13 C 0.08 2.32 4.13 -17.45 -0.07 2.25 16 14 N -0.84 -24.05 12.93 55.50 0.72 -23.33 16 15 Si 0.90 22.09 29.64 -169.99 -5.04 17.05 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 C 0.13 2.52 2.96 -66.81 -0.20 2.32 16 20 C -0.12 -2.32 6.43 -25.03 -0.16 -2.48 16 21 C -0.12 -1.85 6.91 -24.69 -0.17 -2.02 16 22 C -0.12 -1.77 6.83 -25.07 -0.17 -1.94 16 23 C -0.13 -2.23 6.21 -25.61 -0.16 -2.38 16 24 C -0.08 -1.44 8.56 -39.18 -0.34 -1.77 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 27 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.38 5.30 9.06 45.56 0.41 5.72 16 31 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 32 H 0.06 1.20 5.88 -51.93 -0.31 0.89 16 33 H 0.09 2.10 7.26 -51.93 -0.38 1.72 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.47 6.57 -51.93 -0.34 1.13 16 41 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 337.96 15.07 5.09 5.09 Total: -1.00 -33.51 337.96 -7.98 -41.49 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.18 Total: 6.44 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -3.16 Total: -10.04 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.46 Total: -34.22 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.16 Total: -25.81 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.04 Total: 17.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.51 -7.98 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.864 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds