Wall clock time and date at job start Tue Mar 31 2020 06:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38561 * 119.84620 * 2 1 4 4 C 1.38072 * 120.39979 * 179.97438 * 3 2 1 5 5 C 1.38681 * 120.09275 * 0.02562 * 4 3 2 6 6 O 1.35662 * 120.15820 * 179.97438 * 5 4 3 7 7 C 1.40212 * 119.69081 * 359.97438 * 5 4 3 8 8 C 1.47434 * 120.19367 * 179.97438 * 7 5 4 9 9 O 1.21627 * 119.99895 * 69.87303 * 8 7 5 10 10 N 1.34774 * 119.99939 * 249.87237 * 8 7 5 11 11 C 1.36909 * 119.99535 * 185.97474 * 10 8 7 12 12 H 1.08004 * 120.00033 * 227.65921 * 11 10 8 13 13 C 1.39017 * 120.00297 * 47.38937 * 11 10 8 14 14 N 1.31388 * 120.00043 * 27.71729 * 13 11 10 15 15 Si 1.86798 * 120.00137 * 207.71679 * 13 11 10 16 16 H 1.48496 * 109.47142 * 5.01123 * 15 13 11 17 17 H 1.48505 * 109.46936 * 125.01065 * 15 13 11 18 18 H 1.48502 * 109.47400 * 245.00822 * 15 13 11 19 19 C 1.46494 * 120.00144 * 5.97143 * 10 8 7 20 20 C 1.54272 * 110.03090 * 243.41167 * 19 10 8 21 21 C 1.54967 * 104.15791 * 217.13472 * 20 19 10 22 22 C 1.54893 * 102.77708 * 37.89213 * 21 20 19 23 23 C 1.53880 * 110.03281 * 126.19559 * 19 10 8 24 24 C 1.37773 * 119.84775 * 180.23846 * 2 1 3 25 25 H 1.08994 * 109.47271 * 94.98100 * 1 2 3 26 26 H 1.08997 * 109.46663 * 214.98040 * 1 2 3 27 27 H 1.09003 * 109.46565 * 334.97575 * 1 2 3 28 28 H 1.07998 * 119.79963 * 359.96133 * 3 2 1 29 29 H 1.08003 * 119.95689 * 179.97438 * 4 3 2 30 30 H 0.96693 * 113.99938 * 270.02538 * 6 5 4 31 31 H 0.97002 * 119.99967 * 184.94230 * 14 13 11 32 32 H 1.08998 * 110.01919 * 4.80662 * 19 10 8 33 33 H 1.08995 * 110.48529 * 335.78311 * 20 19 10 34 34 H 1.09001 * 110.48396 * 98.43039 * 20 19 10 35 35 H 1.09002 * 110.72264 * 279.57819 * 21 20 19 36 36 H 1.09002 * 110.92341 * 156.29582 * 21 20 19 37 37 H 1.09000 * 110.48764 * 203.40252 * 22 21 20 38 38 H 1.08997 * 110.60106 * 80.81358 * 22 21 20 39 39 H 1.08997 * 110.03348 * 238.57208 * 23 19 10 40 40 H 1.09002 * 110.02869 * 359.95329 * 23 19 10 41 41 H 1.08002 * 120.04538 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1967 1.2018 0.0000 4 6 3.5773 1.2152 0.0005 5 6 4.2842 0.0221 0.0005 6 8 5.6408 0.0336 0.0005 7 6 3.5903 -1.1963 0.0005 8 6 4.3307 -2.4713 0.0000 9 8 4.9499 -2.8154 0.9887 10 7 4.3213 -3.2555 -1.0961 11 6 4.9049 -4.4933 -1.0571 12 1 5.5753 -4.7995 -1.8466 13 6 4.6391 -5.3541 0.0017 14 7 3.4964 -5.2711 0.6449 15 14 5.9064 -6.6288 0.5100 16 1 7.1461 -6.4386 -0.2850 17 1 6.2153 -6.4713 1.9540 18 1 5.3653 -7.9899 0.2652 19 6 3.6867 -2.7834 -2.3291 20 6 2.4896 -3.6882 -2.6872 21 6 2.5308 -3.7770 -4.2338 22 6 4.0493 -3.8396 -4.5329 23 6 4.6779 -2.8792 -3.5023 24 6 2.1928 -1.1950 -0.0050 25 1 -0.3633 -0.0892 -1.0237 26 1 -0.3632 -0.8420 0.5892 27 1 -0.3632 0.9312 0.4347 28 1 1.6509 2.1338 -0.0006 29 1 4.1076 2.1561 0.0001 30 1 6.0341 0.0374 -0.8828 31 1 3.3394 -5.8218 1.4278 32 1 3.3525 -1.7532 -2.2060 33 1 2.6130 -4.6768 -2.2451 34 1 1.5558 -3.2345 -2.3552 35 1 2.0849 -2.8896 -4.6831 36 1 2.0304 -4.6792 -4.5854 37 1 4.2528 -3.4968 -5.5474 38 1 4.4268 -4.8522 -4.3906 39 1 4.8240 -1.8957 -3.9489 40 1 5.6314 -3.2762 -3.1539 41 1 1.6510 -2.1293 -0.0093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:56 Heat of formation + Delta-G solvation = -77.735830 kcal Electronic energy + Delta-G solvation = -24225.473752 eV Core-core repulsion = 20876.258391 eV Total energy + Delta-G solvation = -3349.215361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.37920 -39.82907 -38.26701 -37.88244 -35.29336 -33.71399 -32.65413 -31.99468 -29.45233 -28.46793 -27.29882 -26.87511 -24.38764 -22.85941 -21.41765 -21.39021 -20.93899 -19.44044 -18.35209 -17.67036 -17.01714 -16.91420 -16.64273 -16.20948 -15.84370 -15.57202 -15.00617 -14.80120 -14.61134 -14.38707 -14.24022 -14.07625 -13.54976 -13.47508 -12.92555 -12.87940 -12.71526 -12.57555 -12.48251 -12.42539 -12.23858 -12.11072 -11.84579 -11.78627 -11.55034 -11.39867 -11.33899 -10.66411 -10.29799 -9.80279 -9.35156 -9.20968 -8.30829 -6.01388 0.16276 0.32429 1.29954 1.40356 1.47073 2.13917 2.37659 2.65291 3.02695 3.20800 3.28432 3.85060 3.89921 3.92063 4.00981 4.03307 4.27295 4.41976 4.43314 4.55568 4.68964 4.75105 4.81190 4.83229 4.85291 4.89876 4.94182 5.02341 5.10530 5.18328 5.23515 5.28119 5.33324 5.41115 5.47042 5.54223 5.55439 5.61966 5.68873 5.93010 6.20466 6.80824 6.98803 7.15950 7.61050 8.25199 8.75112 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013678 B = 0.007302 C = 0.006161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.598111 B = 3833.401512 C = 4543.262958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.095 4.095 3 C -0.090 4.090 4 C -0.137 4.137 5 C 0.106 3.894 6 O -0.506 6.506 7 C -0.145 4.145 8 C 0.518 3.482 9 O -0.607 6.607 10 N -0.442 5.442 11 C -0.346 4.346 12 H 0.079 0.921 13 C 0.036 3.964 14 N -0.869 5.869 15 Si 0.949 3.051 16 H -0.260 1.260 17 H -0.299 1.299 18 H -0.270 1.270 19 C 0.124 3.876 20 C -0.122 4.122 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.127 4.127 24 C -0.092 4.092 25 H 0.085 0.915 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.171 0.829 29 H 0.160 0.840 30 H 0.401 0.599 31 H 0.259 0.741 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 12.783 -10.441 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.107 4.107 4 C -0.155 4.155 5 C 0.060 3.940 6 O -0.318 6.318 7 C -0.149 4.149 8 C 0.307 3.693 9 O -0.491 6.491 10 N -0.161 5.161 11 C -0.473 4.473 12 H 0.097 0.903 13 C -0.171 4.171 14 N -0.504 5.504 15 Si 0.775 3.225 16 H -0.184 1.184 17 H -0.226 1.226 18 H -0.195 1.195 19 C 0.020 3.980 20 C -0.160 4.160 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.165 4.165 24 C -0.111 4.111 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.189 0.811 29 H 0.178 0.822 30 H 0.258 0.742 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.326 12.457 -9.288 16.777 hybrid contribution 0.938 -1.394 0.596 1.783 sum -5.388 11.063 -8.691 15.065 Atomic orbital electron populations 1.20829 0.88408 1.03788 1.03435 1.20194 0.98009 0.91838 0.99498 1.21397 0.92998 0.98476 0.97866 1.21590 0.95147 0.96928 1.01845 1.18723 0.83066 0.91411 1.00776 1.84759 1.16229 1.96300 1.34534 1.20631 0.95242 0.93994 1.05054 1.18518 0.82255 0.83749 0.84764 1.90564 1.47381 1.75336 1.35816 1.43495 1.49772 1.13309 1.09522 1.18942 1.25890 0.91176 1.11329 0.90318 1.25928 0.95385 0.98217 0.97547 1.70045 1.21590 1.40433 1.18323 0.85609 0.80719 0.78668 0.77548 1.18413 1.22582 1.19511 1.21997 0.93172 0.97082 0.85705 1.22557 0.96643 0.99830 0.97020 1.22416 0.96394 1.02307 0.93639 1.22236 0.95318 0.98767 0.98600 1.22403 0.98448 1.00410 0.95217 1.20988 0.91525 0.98816 0.99768 0.89612 0.92385 0.88806 0.81149 0.82229 0.74165 0.93164 0.90712 0.93449 0.92848 0.89653 0.91263 0.89406 0.93242 0.90006 0.93144 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.14 10.00 71.24 0.71 -1.43 16 2 C -0.10 -2.64 5.87 -19.89 -0.12 -2.75 16 3 C -0.09 -2.06 9.66 22.31 0.22 -1.84 16 4 C -0.14 -3.67 9.98 22.34 0.22 -3.45 16 5 C 0.11 3.91 6.72 22.86 0.15 4.07 16 6 O -0.51 -18.99 12.95 -89.78 -1.16 -20.15 16 7 C -0.15 -6.40 3.97 -20.01 -0.08 -6.48 16 8 C 0.52 28.42 5.94 86.67 0.51 28.93 16 9 O -0.61 -39.98 15.83 -4.12 -0.07 -40.05 16 10 N -0.44 -22.60 2.43 -613.04 -1.49 -24.09 16 11 C -0.35 -19.46 7.35 84.09 0.62 -18.84 16 12 H 0.08 4.30 6.93 -2.91 -0.02 4.28 16 13 C 0.04 2.09 4.13 84.95 0.35 2.44 16 14 N -0.87 -53.34 12.93 21.68 0.28 -53.06 16 15 Si 0.95 47.50 29.64 68.60 2.03 49.53 16 16 H -0.26 -12.44 7.11 99.48 0.71 -11.74 16 17 H -0.30 -15.74 7.11 99.48 0.71 -15.04 16 18 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 19 C 0.12 4.93 2.96 45.72 0.14 5.07 16 20 C -0.12 -4.64 6.43 31.70 0.20 -4.43 16 21 C -0.11 -3.07 6.91 31.91 0.22 -2.85 16 22 C -0.11 -3.18 6.83 31.67 0.22 -2.96 16 23 C -0.13 -4.22 6.21 31.32 0.19 -4.03 16 24 C -0.09 -3.53 8.56 22.53 0.19 -3.34 16 25 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 27 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 28 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 30 H 0.40 11.10 9.06 -74.06 -0.67 10.42 16 31 H 0.26 15.45 8.32 -92.71 -0.77 14.68 16 32 H 0.07 2.80 5.88 -2.39 -0.01 2.78 16 33 H 0.05 2.24 7.26 -2.39 -0.02 2.22 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 1.95 6.57 -2.39 -0.02 1.93 16 41 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -80.63 337.96 3.72 -76.91 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.37 Total: 22.79 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: 3.76 Total: -11.88 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -1.21 Total: -77.15 kcal Atomic # 8 Polarization: -58.98 SS G_CDS: -1.23 Total: -60.20 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -80.63 3.72 -76.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.823 kcal (2) G-P(sol) polarization free energy of solvation -80.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds