Wall clock time and date at job start Tue Mar 31 2020 06:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38112 * 119.95813 * 2 1 4 4 C 1.38518 * 120.40152 * 179.97438 * 3 2 1 5 5 C 1.37817 * 120.30534 * 0.03800 * 4 3 2 6 6 C 1.39725 * 119.89950 * 359.97438 * 5 4 3 7 7 C 1.47431 * 120.19365 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99874 * 69.26169 * 7 6 5 9 9 N 1.34774 * 120.00388 * 249.25349 * 7 6 5 10 10 C 1.36908 * 120.00214 * 179.12122 * 9 7 6 11 11 H 1.08000 * 119.99889 * 106.31784 * 10 9 7 12 12 C 1.39017 * 120.00059 * 286.32386 * 10 9 7 13 13 N 1.31390 * 120.00052 * 338.00088 * 12 10 9 14 14 Si 1.86794 * 120.00309 * 157.99537 * 12 10 9 15 15 H 1.48506 * 109.46854 * 89.99935 * 14 12 10 16 16 H 1.48495 * 109.47377 * 209.99750 * 14 12 10 17 17 H 1.48498 * 109.47073 * 330.00515 * 14 12 10 18 18 C 1.46498 * 119.99761 * 359.12129 * 9 7 6 19 19 C 1.54271 * 110.03280 * 243.02984 * 18 9 7 20 20 C 1.54964 * 104.15998 * 217.13803 * 19 18 9 21 21 C 1.54890 * 102.77848 * 37.88905 * 20 19 18 22 22 C 1.53872 * 110.03026 * 125.81511 * 18 9 7 23 23 C 1.38645 * 119.95168 * 180.02562 * 2 1 3 24 24 O 1.35665 * 120.15204 * 0.26721 * 23 2 1 25 25 H 1.09005 * 109.46947 * 269.97941 * 1 2 3 26 26 H 1.09005 * 109.46770 * 29.97422 * 1 2 3 27 27 H 1.08996 * 109.47529 * 149.98019 * 1 2 3 28 28 H 1.08002 * 119.80147 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.84776 * 180.02562 * 4 3 2 30 30 H 1.07995 * 120.04764 * 179.97438 * 5 4 3 31 31 H 0.96991 * 119.99939 * 185.02158 * 13 12 10 32 32 H 1.08997 * 110.01771 * 4.42473 * 18 9 7 33 33 H 1.08996 * 110.48638 * 335.78629 * 19 18 9 34 34 H 1.09007 * 110.48304 * 98.42829 * 19 18 9 35 35 H 1.08998 * 110.71911 * 279.57356 * 20 19 18 36 36 H 1.08999 * 110.92407 * 156.29841 * 20 19 18 37 37 H 1.08995 * 110.48684 * 203.40541 * 21 20 19 38 38 H 1.09002 * 110.59924 * 80.81549 * 21 20 19 39 39 H 1.09003 * 110.03592 * 238.56633 * 22 18 9 40 40 H 1.08997 * 110.03353 * 359.94993 * 22 18 9 41 41 H 0.96695 * 114.00798 * 269.72836 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1966 0.0000 4 6 3.5818 1.2073 0.0005 5 6 4.2865 0.0229 0.0003 6 6 3.6016 -1.1950 0.0000 7 6 4.3488 -2.4659 0.0003 8 8 4.9782 -2.8011 0.9857 9 7 4.3344 -3.2564 -1.0911 10 6 5.0430 -4.4279 -1.0973 11 1 4.5251 -5.3726 -1.0207 12 6 6.4289 -4.4015 -1.2021 13 7 7.0290 -3.3519 -1.7167 14 14 7.4383 -5.8579 -0.6111 15 1 7.6205 -6.8196 -1.7279 16 1 8.7660 -5.3835 -0.1449 17 1 6.7308 -6.5285 0.5091 18 6 3.5606 -2.8622 -2.2709 19 6 2.4442 -3.8925 -2.5392 20 6 2.3770 -3.9849 -4.0846 21 6 3.8662 -3.8854 -4.4988 22 6 4.4642 -2.8573 -3.5164 23 6 2.1992 -1.2013 -0.0005 24 8 1.5230 -2.3774 -0.0065 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6528 2.1296 0.0004 29 1 4.1121 2.1482 0.0009 30 1 5.3663 0.0361 0.0003 31 1 7.9886 -3.3623 -1.8571 32 1 3.1278 -1.8733 -2.1198 33 1 2.7065 -4.8596 -2.1104 34 1 1.4949 -3.5400 -2.1356 35 1 1.8052 -3.1532 -4.4962 36 1 1.9513 -4.9376 -4.3995 37 1 3.9537 -3.5283 -5.5249 38 1 4.3602 -4.8508 -4.3884 39 1 4.4692 -1.8663 -3.9703 40 1 5.4786 -3.1474 -3.2429 41 1 1.3270 -2.7230 0.8750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080212281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:07 Heat of formation + Delta-G solvation = -54.929711 kcal Electronic energy + Delta-G solvation = -24413.317200 eV Core-core repulsion = 21065.090787 eV Total energy + Delta-G solvation = -3348.226413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95834 -38.16672 -36.57558 -36.21232 -33.44182 -32.46129 -31.50518 -29.68928 -27.67800 -26.72544 -26.58079 -25.05935 -22.73781 -21.38495 -19.90920 -19.65595 -19.02474 -17.91451 -16.78680 -16.00144 -15.69862 -15.21905 -14.93072 -14.71400 -14.18498 -14.01787 -13.61391 -13.30863 -13.07339 -12.93758 -12.45747 -12.41987 -12.11610 -11.87283 -11.66794 -11.46415 -11.26816 -10.94129 -10.91692 -10.65377 -10.45943 -10.29934 -10.24892 -10.15926 -10.08399 -9.76633 -9.42294 -8.56880 -8.52593 -8.29970 -8.12183 -6.89840 -6.17431 -4.13554 1.47971 1.57643 3.26582 3.36790 3.44566 3.79574 4.05995 4.32766 4.53928 4.86998 5.02875 5.09975 5.19407 5.42363 5.48073 5.54687 5.58387 5.66935 5.73151 5.79828 5.90552 5.98066 6.16258 6.24661 6.33396 6.35055 6.41384 6.51773 6.63060 6.65851 6.68727 6.72586 6.76273 6.83922 6.99836 7.09878 7.16077 7.23553 7.61445 7.83887 7.98767 8.48851 9.01298 9.14762 9.49281 10.20213 10.83811 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.007123 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.947315 B = 3929.933699 C = 4724.846930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.130 4.130 5 C -0.076 4.076 6 C -0.115 4.115 7 C 0.536 3.464 8 O -0.561 6.561 9 N -0.424 5.424 10 C -0.334 4.334 11 H 0.072 0.928 12 C 0.078 3.922 13 N -0.855 5.855 14 Si 0.907 3.093 15 H -0.281 1.281 16 H -0.284 1.284 17 H -0.268 1.268 18 C 0.140 3.860 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.115 4.115 22 C -0.142 4.142 23 C 0.128 3.872 24 O -0.483 6.483 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.267 0.733 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.124 0.876 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.617 6.526 -1.201 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.122 4.122 3 C -0.128 4.128 4 C -0.148 4.148 5 C -0.095 4.095 6 C -0.119 4.119 7 C 0.323 3.677 8 O -0.442 6.442 9 N -0.144 5.144 10 C -0.462 4.462 11 H 0.089 0.911 12 C -0.131 4.131 13 N -0.489 5.489 14 Si 0.734 3.266 15 H -0.207 1.207 16 H -0.210 1.210 17 H -0.192 1.192 18 C 0.035 3.965 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.153 4.153 22 C -0.180 4.180 23 C 0.082 3.918 24 O -0.292 6.292 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.146 0.854 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.056 0.944 40 H 0.142 0.858 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.057 6.489 -1.324 12.042 hybrid contribution 0.638 -0.539 0.600 1.028 sum -9.420 5.951 -0.724 11.165 Atomic orbital electron populations 1.20630 0.90888 1.02916 1.01879 1.20075 0.96409 0.92444 1.03285 1.20893 0.94087 0.96818 1.00973 1.21014 0.94065 0.97856 1.01898 1.21132 1.00387 0.90696 0.97301 1.20925 0.93410 0.96399 1.01121 1.18254 0.81695 0.83153 0.84644 1.90641 1.45321 1.73982 1.34246 1.43100 1.42825 1.19323 1.09126 1.18648 0.87805 0.84646 1.55064 0.91067 1.25606 0.98023 0.96725 0.92720 1.69761 1.10611 1.30323 1.38169 0.86292 0.79219 0.81589 0.79488 1.20673 1.20975 1.19238 1.21693 0.91109 0.95898 0.87751 1.22596 0.98281 1.00773 0.94301 1.22459 0.96892 0.99878 0.96860 1.22248 0.95184 1.00229 0.97612 1.22661 1.04568 0.96574 0.94157 1.18284 0.88443 0.85156 0.99901 1.84755 1.75805 1.35668 1.33004 0.91741 0.91865 0.90886 0.86101 0.85900 0.85402 0.92333 0.92382 0.90994 0.92135 0.92786 0.92812 0.93560 0.91865 0.94443 0.85790 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.79 36.01 0.35 -0.83 16 2 C -0.12 -1.77 5.89 -104.52 -0.62 -2.39 16 3 C -0.11 -1.49 9.68 -39.52 -0.38 -1.87 16 4 C -0.13 -1.94 10.02 -39.63 -0.40 -2.34 16 5 C -0.08 -1.45 9.79 -39.18 -0.38 -1.83 16 6 C -0.11 -2.40 4.20 -104.85 -0.44 -2.84 16 7 C 0.54 13.76 6.52 -12.52 -0.08 13.68 16 8 O -0.56 -16.57 16.93 5.25 0.09 -16.49 16 9 N -0.42 -10.70 2.22 -107.75 -0.24 -10.94 16 10 C -0.33 -9.11 6.86 -15.00 -0.10 -9.22 16 11 H 0.07 1.95 7.46 -52.49 -0.39 1.56 16 12 C 0.08 2.13 4.95 -17.45 -0.09 2.04 16 13 N -0.85 -23.81 11.74 55.50 0.65 -23.16 16 14 Si 0.91 21.75 29.61 -169.99 -5.03 16.71 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.14 3.06 2.56 -66.81 -0.17 2.89 16 19 C -0.12 -2.35 6.14 -25.03 -0.15 -2.50 16 20 C -0.12 -2.08 6.91 -24.70 -0.17 -2.25 16 21 C -0.11 -2.14 6.83 -25.07 -0.17 -2.31 16 22 C -0.14 -3.08 6.24 -25.61 -0.16 -3.24 16 23 C 0.13 2.24 5.42 -38.68 -0.21 2.03 16 24 O -0.48 -7.89 10.08 -18.70 -0.19 -8.08 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 27 H 0.07 0.84 7.53 -51.93 -0.39 0.45 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.13 2.52 8.06 -52.49 -0.42 2.10 16 31 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.06 1.27 5.48 -51.93 -0.28 0.98 16 33 H 0.07 1.52 6.94 -51.93 -0.36 1.16 16 34 H 0.06 1.11 7.00 -51.93 -0.36 0.75 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.12 3.14 4.89 -51.93 -0.25 2.89 16 41 H 0.39 4.96 9.06 45.56 0.41 5.38 16 LS Contribution 331.48 15.07 5.00 5.00 Total: -1.00 -32.06 331.48 -7.89 -39.95 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -4.99 Total: 8.00 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -3.17 Total: -10.99 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.41 Total: -34.10 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.10 Total: -24.56 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.06 -7.89 -39.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.984 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds