Wall clock time and date at job start Tue Mar 31 2020 06:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38112 * 119.95813 * 2 1 4 4 C 1.38518 * 120.40152 * 179.97438 * 3 2 1 5 5 C 1.37817 * 120.30534 * 0.03800 * 4 3 2 6 6 C 1.39725 * 119.89950 * 359.97438 * 5 4 3 7 7 C 1.47431 * 120.19365 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99874 * 69.26169 * 7 6 5 9 9 N 1.34774 * 120.00388 * 249.25349 * 7 6 5 10 10 C 1.36908 * 120.00214 * 179.12122 * 9 7 6 11 11 H 1.08000 * 119.99889 * 106.31784 * 10 9 7 12 12 C 1.39017 * 120.00059 * 286.32386 * 10 9 7 13 13 N 1.31390 * 120.00052 * 338.00088 * 12 10 9 14 14 Si 1.86794 * 120.00309 * 157.99537 * 12 10 9 15 15 H 1.48506 * 109.46854 * 89.99935 * 14 12 10 16 16 H 1.48495 * 109.47377 * 209.99750 * 14 12 10 17 17 H 1.48498 * 109.47073 * 330.00515 * 14 12 10 18 18 C 1.46498 * 119.99761 * 359.12129 * 9 7 6 19 19 C 1.54271 * 110.03280 * 243.02984 * 18 9 7 20 20 C 1.54964 * 104.15998 * 217.13803 * 19 18 9 21 21 C 1.54890 * 102.77848 * 37.88905 * 20 19 18 22 22 C 1.53872 * 110.03026 * 125.81511 * 18 9 7 23 23 C 1.38645 * 119.95168 * 180.02562 * 2 1 3 24 24 O 1.35665 * 120.15204 * 0.26721 * 23 2 1 25 25 H 1.09005 * 109.46947 * 269.97941 * 1 2 3 26 26 H 1.09005 * 109.46770 * 29.97422 * 1 2 3 27 27 H 1.08996 * 109.47529 * 149.98019 * 1 2 3 28 28 H 1.08002 * 119.80147 * 0.02562 * 3 2 1 29 29 H 1.08001 * 119.84776 * 180.02562 * 4 3 2 30 30 H 1.07995 * 120.04764 * 179.97438 * 5 4 3 31 31 H 0.96991 * 119.99939 * 185.02158 * 13 12 10 32 32 H 1.08997 * 110.01771 * 4.42473 * 18 9 7 33 33 H 1.08996 * 110.48638 * 335.78629 * 19 18 9 34 34 H 1.09007 * 110.48304 * 98.42829 * 19 18 9 35 35 H 1.08998 * 110.71911 * 279.57356 * 20 19 18 36 36 H 1.08999 * 110.92407 * 156.29841 * 20 19 18 37 37 H 1.08995 * 110.48684 * 203.40541 * 21 20 19 38 38 H 1.09002 * 110.59924 * 80.81549 * 21 20 19 39 39 H 1.09003 * 110.03592 * 238.56633 * 22 18 9 40 40 H 1.08997 * 110.03353 * 359.94993 * 22 18 9 41 41 H 0.96695 * 114.00798 * 269.72836 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1966 0.0000 4 6 3.5818 1.2073 0.0005 5 6 4.2865 0.0229 0.0003 6 6 3.6016 -1.1950 0.0000 7 6 4.3488 -2.4659 0.0003 8 8 4.9782 -2.8011 0.9857 9 7 4.3344 -3.2564 -1.0911 10 6 5.0430 -4.4279 -1.0973 11 1 4.5251 -5.3726 -1.0207 12 6 6.4289 -4.4015 -1.2021 13 7 7.0290 -3.3519 -1.7167 14 14 7.4383 -5.8579 -0.6111 15 1 7.6205 -6.8196 -1.7279 16 1 8.7660 -5.3835 -0.1449 17 1 6.7308 -6.5285 0.5091 18 6 3.5606 -2.8622 -2.2709 19 6 2.4442 -3.8925 -2.5392 20 6 2.3770 -3.9849 -4.0846 21 6 3.8662 -3.8854 -4.4988 22 6 4.4642 -2.8573 -3.5164 23 6 2.1992 -1.2013 -0.0005 24 8 1.5230 -2.3774 -0.0065 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8903 -0.5135 27 1 -0.3634 -0.8897 -0.5141 28 1 1.6528 2.1296 0.0004 29 1 4.1121 2.1482 0.0009 30 1 5.3663 0.0361 0.0003 31 1 7.9886 -3.3623 -1.8571 32 1 3.1278 -1.8733 -2.1198 33 1 2.7065 -4.8596 -2.1104 34 1 1.4949 -3.5400 -2.1356 35 1 1.8052 -3.1532 -4.4962 36 1 1.9513 -4.9376 -4.3995 37 1 3.9537 -3.5283 -5.5249 38 1 4.3602 -4.8508 -4.3884 39 1 4.4692 -1.8663 -3.9703 40 1 5.4786 -3.1474 -3.2429 41 1 1.3270 -2.7230 0.8750 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080212281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:06 Heat of formation + Delta-G solvation = -75.248848 kcal Electronic energy + Delta-G solvation = -24414.198304 eV Core-core repulsion = 21065.090787 eV Total energy + Delta-G solvation = -3349.107517 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44875 -39.79598 -38.33273 -37.50725 -35.38393 -33.87830 -33.28305 -31.05903 -29.28599 -28.44930 -27.65872 -26.94185 -24.29935 -22.66592 -21.44212 -21.35920 -20.77492 -19.23609 -18.51196 -17.82813 -17.13491 -16.83622 -16.49719 -16.36284 -15.81072 -15.55622 -15.21109 -14.88665 -14.38159 -14.21851 -14.11709 -14.01235 -13.48287 -13.28085 -13.08020 -13.03694 -12.79118 -12.69245 -12.44120 -12.32462 -12.20970 -12.10531 -11.74031 -11.69842 -11.51710 -11.32684 -11.16659 -10.61763 -10.39332 -9.65728 -9.45405 -8.91760 -8.24571 -6.27602 0.16843 0.32085 1.30894 1.38750 1.48451 2.07809 2.32872 2.63950 2.98115 3.14499 3.32311 3.85689 3.93635 3.99136 4.05611 4.10407 4.32594 4.38133 4.50302 4.63379 4.72244 4.77047 4.85332 4.90307 4.91887 4.93508 4.95421 4.98430 5.24242 5.26555 5.33890 5.36376 5.40069 5.47667 5.50300 5.54785 5.58027 5.64144 5.91905 5.95709 6.39697 6.79536 7.00018 7.10554 7.50823 8.19434 8.74511 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016238 B = 0.007123 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.947315 B = 3929.933699 C = 4724.846930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.114 4.114 3 C -0.093 4.093 4 C -0.120 4.120 5 C -0.103 4.103 6 C -0.153 4.153 7 C 0.525 3.475 8 O -0.620 6.620 9 N -0.429 5.429 10 C -0.349 4.349 11 H 0.061 0.939 12 C 0.036 3.964 13 N -0.878 5.878 14 Si 0.960 3.040 15 H -0.258 1.258 16 H -0.286 1.286 17 H -0.277 1.277 18 C 0.140 3.860 19 C -0.114 4.114 20 C -0.110 4.110 21 C -0.110 4.110 22 C -0.147 4.147 23 C 0.123 3.877 24 O -0.491 6.491 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.169 0.831 29 H 0.156 0.844 30 H 0.100 0.900 31 H 0.267 0.733 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.087 0.913 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 8.252 -2.326 16.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C -0.111 4.111 4 C -0.138 4.138 5 C -0.122 4.122 6 C -0.157 4.157 7 C 0.313 3.687 8 O -0.506 6.506 9 N -0.147 5.147 10 C -0.477 4.477 11 H 0.079 0.921 12 C -0.170 4.170 13 N -0.513 5.513 14 Si 0.785 3.215 15 H -0.183 1.183 16 H -0.211 1.211 17 H -0.202 1.202 18 C 0.036 3.964 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.147 4.147 22 C -0.186 4.186 23 C 0.078 3.922 24 O -0.302 6.302 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.186 0.814 29 H 0.174 0.826 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.105 0.895 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -13.000 8.205 -2.489 15.573 hybrid contribution 1.475 -0.993 0.975 2.028 sum -11.525 7.212 -1.514 13.679 Atomic orbital electron populations 1.20706 0.87831 1.03983 1.03368 1.20499 0.98461 0.91320 1.01180 1.21447 0.93454 0.98325 0.97827 1.21332 0.95044 0.97292 1.00117 1.21096 0.99459 0.91982 0.99652 1.20658 0.94957 0.94413 1.05657 1.18991 0.81276 0.84638 0.83750 1.90563 1.48074 1.75796 1.36191 1.43289 1.42557 1.18756 1.10111 1.18734 0.88432 0.85288 1.55248 0.92100 1.26266 0.98881 0.99150 0.92724 1.69860 1.10634 1.31796 1.38980 0.85483 0.77462 0.79368 0.79236 1.18251 1.21140 1.20195 1.21806 0.91439 0.96733 0.86377 1.22505 0.97600 0.98550 0.96579 1.22426 0.95872 1.02126 0.94351 1.22194 0.96061 0.98349 0.98138 1.22626 1.02825 0.97933 0.95176 1.18376 0.87130 0.86607 1.00124 1.84695 1.75362 1.35890 1.34255 0.89905 0.89263 0.91374 0.81364 0.82609 0.88165 0.92369 0.92253 0.93425 0.90904 0.90420 0.90545 0.90916 0.93471 0.93782 0.89469 0.74381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.79 71.24 0.70 -1.10 16 2 C -0.11 -2.94 5.89 -19.80 -0.12 -3.05 16 3 C -0.09 -2.11 9.68 22.31 0.22 -1.90 16 4 C -0.12 -3.31 10.02 22.24 0.22 -3.09 16 5 C -0.10 -4.01 9.79 22.53 0.22 -3.79 16 6 C -0.15 -6.63 4.20 -20.01 -0.08 -6.71 16 7 C 0.52 28.56 6.52 86.67 0.57 29.12 16 8 O -0.62 -39.33 16.93 -4.12 -0.07 -39.40 16 9 N -0.43 -22.72 2.22 -613.05 -1.36 -24.08 16 10 C -0.35 -20.03 6.86 84.09 0.58 -19.46 16 11 H 0.06 3.53 7.46 -2.91 -0.02 3.50 16 12 C 0.04 2.03 4.95 84.95 0.42 2.45 16 13 N -0.88 -51.39 11.74 21.68 0.25 -51.13 16 14 Si 0.96 46.31 29.61 68.60 2.03 48.34 16 15 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 16 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 17 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 18 C 0.14 6.24 2.56 45.72 0.12 6.36 16 19 C -0.11 -4.36 6.14 31.70 0.19 -4.16 16 20 C -0.11 -3.44 6.91 31.91 0.22 -3.22 16 21 C -0.11 -3.95 6.83 31.67 0.22 -3.73 16 22 C -0.15 -6.51 6.24 31.32 0.20 -6.32 16 23 C 0.12 4.23 5.42 22.85 0.12 4.35 16 24 O -0.49 -15.82 10.08 -89.81 -0.90 -16.72 16 25 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.09 1.16 8.08 -2.38 -0.02 1.14 16 27 H 0.07 1.31 7.53 -2.39 -0.02 1.29 16 28 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 31 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.06 2.62 5.48 -2.39 -0.01 2.60 16 33 H 0.05 2.04 6.94 -2.39 -0.02 2.02 16 34 H 0.07 2.57 7.00 -2.38 -0.02 2.56 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.09 4.60 4.89 -2.39 -0.01 4.59 16 41 H 0.40 10.25 9.06 -74.06 -0.67 9.58 16 Total: -1.00 -75.72 331.48 4.11 -71.61 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.37 Total: 25.64 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.79 Total: -14.25 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.11 Total: -75.21 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -0.97 Total: -56.12 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -75.72 4.11 -71.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080212281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.639 kcal (2) G-P(sol) polarization free energy of solvation -75.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds