Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38101 * 119.95723 * 2 1 4 4 C 1.38506 * 120.38782 * 180.02562 * 3 2 1 5 5 C 1.37826 * 120.30069 * 359.97438 * 4 3 2 6 6 C 1.39664 * 119.91015 * 359.97438 * 5 4 3 7 7 C 1.47534 * 120.19143 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00070 * 145.23759 * 7 6 5 9 9 N 1.34774 * 120.00280 * 325.23323 * 7 6 5 10 10 C 1.46499 * 120.00036 * 6.59821 * 9 7 6 11 11 C 1.50695 * 109.47056 * 106.07985 * 10 9 7 12 12 H 1.07997 * 120.00047 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99912 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00313 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00214 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47336 * 89.99839 * 15 13 11 17 17 H 1.48497 * 109.47461 * 210.00216 * 15 13 11 18 18 H 1.48504 * 109.47147 * 330.00023 * 15 13 11 19 19 C 1.46500 * 120.00232 * 186.59977 * 9 7 6 20 20 C 1.53003 * 109.47295 * 94.91603 * 19 9 7 21 21 C 1.53001 * 117.49833 * 246.98522 * 20 19 9 22 22 C 1.52996 * 117.49754 * 178.32418 * 20 19 9 23 23 C 1.38661 * 119.95842 * 179.97438 * 2 1 3 24 24 O 1.35659 * 120.15225 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.47600 * 89.99085 * 1 2 3 26 26 H 1.08996 * 109.47095 * 209.99555 * 1 2 3 27 27 H 1.09004 * 109.46985 * 329.99391 * 1 2 3 28 28 H 1.07997 * 119.80549 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.84763 * 179.97438 * 4 3 2 30 30 H 1.08001 * 120.04450 * 179.72189 * 5 4 3 31 31 H 1.08997 * 109.47455 * 226.08416 * 10 9 7 32 32 H 1.09000 * 109.46932 * 346.08414 * 10 9 7 33 33 H 0.96998 * 120.00298 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.47160 * 214.91524 * 19 9 7 35 35 H 1.09000 * 109.46785 * 334.91521 * 19 9 7 36 36 H 1.08997 * 115.54748 * 32.65221 * 20 19 9 37 37 H 1.08999 * 117.49774 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49760 * 145.01987 * 21 20 19 39 39 H 1.09000 * 117.49825 * 214.97742 * 22 20 19 40 40 H 1.09001 * 117.50164 * 0.02562 * 22 20 19 41 41 H 0.96698 * 113.99530 * 89.99778 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.1965 0.0000 4 6 3.5816 1.2069 -0.0005 5 6 4.2859 0.0222 -0.0005 6 6 3.6012 -1.1951 0.0005 7 6 4.3488 -2.4669 0.0000 8 8 3.9119 -3.4293 0.6011 9 7 5.5161 -2.5621 -0.6669 10 6 6.1151 -1.3686 -1.2692 11 6 7.3025 -0.9341 -0.4492 12 1 7.5831 -1.4916 0.4321 13 6 8.0306 0.1750 -0.8242 14 7 7.6885 0.8542 -1.8973 15 14 9.5028 0.7132 0.1917 16 1 10.7270 0.0450 -0.3181 17 1 9.6635 2.1859 0.0891 18 1 9.2884 0.3366 1.6121 19 6 6.1860 -3.8592 -0.7896 20 6 5.7930 -4.5129 -2.1159 21 6 4.9476 -5.7865 -2.0527 22 6 6.4235 -5.8661 -2.4508 23 6 2.1994 -1.2013 0.0005 24 8 1.5234 -2.3775 0.0005 25 1 -0.3634 0.0002 -1.0276 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5140 28 1 1.6527 2.1295 0.0004 29 1 4.1120 2.1476 -0.0009 30 1 5.3658 0.0351 -0.0055 31 1 6.4389 -1.5974 -2.2845 32 1 5.3782 -0.5659 -1.2951 33 1 8.2010 1.6344 -2.1613 34 1 7.2661 -3.7144 -0.7618 35 1 5.8845 -4.5034 0.0364 36 1 5.6073 -3.8260 -2.9416 37 1 4.6710 -6.1585 -1.0662 38 1 4.2060 -5.9377 -2.8370 39 1 6.6523 -6.0697 -3.4969 40 1 7.1180 -6.2909 -1.7260 41 1 1.3277 -2.7186 -0.8829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088407680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = -13.028077 kcal Electronic energy + Delta-G solvation = -23517.953311 eV Core-core repulsion = 20171.543889 eV Total energy + Delta-G solvation = -3346.409422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13408 -38.42160 -36.76638 -36.39481 -34.77209 -32.56535 -32.40390 -29.82528 -28.01955 -26.54889 -26.21195 -23.36576 -22.57709 -22.05786 -21.27938 -20.32162 -18.84182 -17.74255 -16.66289 -16.33163 -15.94741 -15.49189 -15.31941 -14.56743 -14.40741 -14.27282 -14.08961 -13.49610 -13.23751 -13.12297 -12.85055 -12.40938 -12.16970 -12.06627 -11.82405 -11.54343 -11.34058 -11.24975 -11.20334 -11.05685 -10.92468 -10.50107 -10.33261 -10.13459 -9.91451 -9.70111 -9.57138 -8.98354 -8.71007 -8.31387 -8.02743 -7.69006 -6.28007 -4.36673 1.37487 1.68391 3.17827 3.25670 3.29274 3.46616 3.80365 4.14319 4.18970 4.29130 4.57543 5.02732 5.08054 5.11363 5.15632 5.26426 5.34954 5.41802 5.55396 5.70347 5.78859 5.83406 5.86395 5.92990 6.05137 6.14296 6.15697 6.19943 6.31750 6.37905 6.46481 6.62156 6.74244 6.77185 6.84765 6.95659 7.18089 7.26830 7.51745 7.66700 7.94309 8.00631 8.35740 8.71797 9.02883 9.31801 10.77144 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.007649 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.632373 B = 3659.665251 C = 5883.829291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.141 4.141 3 C -0.090 4.090 4 C -0.139 4.139 5 C -0.073 4.073 6 C -0.154 4.154 7 C 0.557 3.443 8 O -0.551 6.551 9 N -0.588 5.588 10 C 0.206 3.794 11 C -0.542 4.542 12 H 0.064 0.936 13 C 0.068 3.932 14 N -0.884 5.884 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.150 3.850 20 C -0.159 4.159 21 C -0.178 4.178 22 C -0.179 4.179 23 C 0.150 3.850 24 O -0.479 6.479 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.188 0.812 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.267 0.733 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 -2.346 -1.389 8.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.142 4.142 3 C -0.109 4.109 4 C -0.157 4.157 5 C -0.091 4.091 6 C -0.158 4.158 7 C 0.345 3.655 8 O -0.431 6.431 9 N -0.317 5.317 10 C 0.087 3.913 11 C -0.580 4.580 12 H 0.082 0.918 13 C -0.136 4.136 14 N -0.521 5.521 15 Si 0.723 3.277 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.196 1.196 19 C 0.026 3.974 20 C -0.178 4.178 21 C -0.215 4.215 22 C -0.216 4.216 23 C 0.104 3.896 24 O -0.288 6.288 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.204 0.796 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -8.568 -2.634 -0.588 8.983 hybrid contribution 0.973 0.454 -0.262 1.105 sum -7.595 -2.181 -0.850 7.947 Atomic orbital electron populations 1.20595 0.90942 1.02760 1.01790 1.20002 0.96360 0.92375 1.05416 1.21044 0.94424 0.96722 0.98662 1.21168 0.93657 0.98733 1.02156 1.22719 1.04374 0.90329 0.91673 1.20399 0.93125 0.94764 1.07507 1.18076 0.80989 0.87160 0.79253 1.90702 1.69114 1.39080 1.44220 1.48005 1.20803 1.09956 1.52983 1.20280 0.94409 0.82594 0.93992 1.21457 1.12605 1.12217 1.11744 0.91787 1.24962 0.97517 0.96078 0.95055 1.69929 1.39896 1.18533 1.23781 0.86518 0.82629 0.77863 0.80714 1.20395 1.20925 1.19613 1.20831 0.97608 0.84544 0.94390 1.22764 1.04149 0.90415 1.00496 1.22986 0.93416 1.02479 1.02637 1.22890 0.96093 1.00943 1.01713 1.18230 0.88247 0.85033 0.98082 1.84774 1.75818 1.35826 1.32422 0.91842 0.91154 0.91858 0.86085 0.85509 0.79575 0.95279 0.91229 0.92305 0.89789 0.90581 0.87886 0.88714 0.89575 0.89175 0.88920 0.76208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.79 36.00 0.35 -0.88 16 2 C -0.14 -2.18 5.89 -104.52 -0.62 -2.79 16 3 C -0.09 -1.35 9.68 -39.53 -0.38 -1.73 16 4 C -0.14 -2.38 10.02 -39.63 -0.40 -2.78 16 5 C -0.07 -1.48 7.42 -39.20 -0.29 -1.77 16 6 C -0.15 -3.16 5.51 -104.85 -0.58 -3.74 16 7 C 0.56 12.33 7.26 -12.47 -0.09 12.24 16 8 O -0.55 -13.19 15.41 -12.56 -0.19 -13.39 16 9 N -0.59 -12.63 2.51 -176.29 -0.44 -13.08 16 10 C 0.21 4.80 4.72 -5.20 -0.02 4.77 16 11 C -0.54 -13.54 7.54 -34.44 -0.26 -13.80 16 12 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 14 N -0.88 -23.00 13.29 55.43 0.74 -22.27 16 15 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 C 0.15 2.87 5.73 -4.04 -0.02 2.85 16 20 C -0.16 -2.65 6.01 -90.62 -0.54 -3.19 16 21 C -0.18 -2.61 10.18 -26.69 -0.27 -2.88 16 22 C -0.18 -2.45 10.25 -26.69 -0.27 -2.72 16 23 C 0.15 2.71 6.65 -38.70 -0.26 2.46 16 24 O -0.48 -8.18 11.18 -36.53 -0.41 -8.59 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.86 7.53 -51.93 -0.39 0.46 16 27 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.19 4.22 4.06 -52.49 -0.21 4.01 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.64 3.69 -52.76 -0.19 1.45 16 33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.08 1.63 7.86 -51.93 -0.41 1.22 16 35 H 0.08 1.48 6.96 -51.93 -0.36 1.12 16 36 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 37 H 0.09 1.45 8.04 -51.93 -0.42 1.03 16 38 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.38 4.89 9.06 45.56 0.41 5.30 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -29.10 341.74 -8.85 -37.95 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -4.92 Total: 11.80 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -3.75 Total: -12.35 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.29 Total: -35.34 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.60 Total: -21.98 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.10 -8.85 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088407680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.925 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds