Wall clock time and date at job start Tue Mar 31 2020 06:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38101 * 119.95723 * 2 1 4 4 C 1.38506 * 120.38782 * 180.02562 * 3 2 1 5 5 C 1.37826 * 120.30069 * 359.97438 * 4 3 2 6 6 C 1.39664 * 119.91015 * 359.97438 * 5 4 3 7 7 C 1.47534 * 120.19143 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00070 * 145.23759 * 7 6 5 9 9 N 1.34774 * 120.00280 * 325.23323 * 7 6 5 10 10 C 1.46499 * 120.00036 * 6.59821 * 9 7 6 11 11 C 1.50695 * 109.47056 * 106.07985 * 10 9 7 12 12 H 1.07997 * 120.00047 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99912 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00313 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00214 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47336 * 89.99839 * 15 13 11 17 17 H 1.48497 * 109.47461 * 210.00216 * 15 13 11 18 18 H 1.48504 * 109.47147 * 330.00023 * 15 13 11 19 19 C 1.46500 * 120.00232 * 186.59977 * 9 7 6 20 20 C 1.53003 * 109.47295 * 94.91603 * 19 9 7 21 21 C 1.53001 * 117.49833 * 246.98522 * 20 19 9 22 22 C 1.52996 * 117.49754 * 178.32418 * 20 19 9 23 23 C 1.38661 * 119.95842 * 179.97438 * 2 1 3 24 24 O 1.35659 * 120.15225 * 0.02562 * 23 2 1 25 25 H 1.09000 * 109.47600 * 89.99085 * 1 2 3 26 26 H 1.08996 * 109.47095 * 209.99555 * 1 2 3 27 27 H 1.09004 * 109.46985 * 329.99391 * 1 2 3 28 28 H 1.07997 * 119.80549 * 0.02562 * 3 2 1 29 29 H 1.07997 * 119.84763 * 179.97438 * 4 3 2 30 30 H 1.08001 * 120.04450 * 179.72189 * 5 4 3 31 31 H 1.08997 * 109.47455 * 226.08416 * 10 9 7 32 32 H 1.09000 * 109.46932 * 346.08414 * 10 9 7 33 33 H 0.96998 * 120.00298 * 180.02562 * 14 13 11 34 34 H 1.09003 * 109.47160 * 214.91524 * 19 9 7 35 35 H 1.09000 * 109.46785 * 334.91521 * 19 9 7 36 36 H 1.08997 * 115.54748 * 32.65221 * 20 19 9 37 37 H 1.08999 * 117.49774 * 0.02562 * 21 20 19 38 38 H 1.09000 * 117.49760 * 145.01987 * 21 20 19 39 39 H 1.09000 * 117.49825 * 214.97742 * 22 20 19 40 40 H 1.09001 * 117.50164 * 0.02562 * 22 20 19 41 41 H 0.96698 * 113.99530 * 89.99778 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1966 1.1965 0.0000 4 6 3.5816 1.2069 -0.0005 5 6 4.2859 0.0222 -0.0005 6 6 3.6012 -1.1951 0.0005 7 6 4.3488 -2.4669 0.0000 8 8 3.9119 -3.4293 0.6011 9 7 5.5161 -2.5621 -0.6669 10 6 6.1151 -1.3686 -1.2692 11 6 7.3025 -0.9341 -0.4492 12 1 7.5831 -1.4916 0.4321 13 6 8.0306 0.1750 -0.8242 14 7 7.6885 0.8542 -1.8973 15 14 9.5028 0.7132 0.1917 16 1 10.7270 0.0450 -0.3181 17 1 9.6635 2.1859 0.0891 18 1 9.2884 0.3366 1.6121 19 6 6.1860 -3.8592 -0.7896 20 6 5.7930 -4.5129 -2.1159 21 6 4.9476 -5.7865 -2.0527 22 6 6.4235 -5.8661 -2.4508 23 6 2.1994 -1.2013 0.0005 24 8 1.5234 -2.3775 0.0005 25 1 -0.3634 0.0002 -1.0276 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5140 28 1 1.6527 2.1295 0.0004 29 1 4.1120 2.1476 -0.0009 30 1 5.3658 0.0351 -0.0055 31 1 6.4389 -1.5974 -2.2845 32 1 5.3782 -0.5659 -1.2951 33 1 8.2010 1.6344 -2.1613 34 1 7.2661 -3.7144 -0.7618 35 1 5.8845 -4.5034 0.0364 36 1 5.6073 -3.8260 -2.9416 37 1 4.6710 -6.1585 -1.0662 38 1 4.2060 -5.9377 -2.8370 39 1 6.6523 -6.0697 -3.4969 40 1 7.1180 -6.2909 -1.7260 41 1 1.3277 -2.7186 -0.8829 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088407680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:42 Heat of formation + Delta-G solvation = -28.754250 kcal Electronic energy + Delta-G solvation = -23518.635249 eV Core-core repulsion = 20171.543889 eV Total energy + Delta-G solvation = -3347.091360 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.64298 -39.90061 -38.16054 -37.77388 -36.46226 -34.46138 -33.68359 -31.18117 -29.76586 -28.11341 -27.47936 -25.14389 -24.09207 -23.22014 -22.62054 -21.70640 -20.41664 -19.12947 -18.57928 -17.88933 -17.58044 -16.90802 -16.66243 -16.33123 -15.94210 -15.69495 -15.44649 -14.90033 -14.71945 -14.45192 -14.21809 -14.17670 -13.52620 -13.36952 -13.14770 -13.00476 -12.86166 -12.80286 -12.56905 -12.48437 -12.36953 -12.17315 -11.94506 -11.71635 -11.41593 -11.33557 -10.88929 -10.72706 -10.50777 -9.76883 -9.44207 -9.37786 -8.22729 -6.37862 -0.03263 0.34371 1.40400 1.43383 1.52290 1.86684 2.21687 2.41355 2.74608 2.92503 3.05942 3.28363 3.68147 3.81657 3.95222 3.99121 4.11351 4.12189 4.35948 4.40137 4.52940 4.62469 4.73987 4.75506 4.80948 4.85310 4.89593 4.93965 4.97457 4.98482 5.21776 5.24425 5.26668 5.31019 5.42702 5.48837 5.59260 5.65143 5.80108 5.93344 6.01243 6.55352 6.76983 6.80521 7.25891 7.37404 8.82041 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.007649 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.632373 B = 3659.665251 C = 5883.829291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.133 4.133 3 C -0.075 4.075 4 C -0.143 4.143 5 C -0.096 4.096 6 C -0.185 4.185 7 C 0.552 3.448 8 O -0.578 6.578 9 N -0.590 5.590 10 C 0.222 3.778 11 C -0.551 4.551 12 H 0.049 0.951 13 C 0.032 3.968 14 N -0.907 5.907 15 Si 0.953 3.047 16 H -0.275 1.275 17 H -0.275 1.275 18 H -0.275 1.275 19 C 0.149 3.851 20 C -0.184 4.184 21 C -0.170 4.170 22 C -0.154 4.154 23 C 0.142 3.858 24 O -0.490 6.490 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.165 0.835 29 H 0.140 0.860 30 H 0.156 0.844 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.271 0.729 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.853 -1.516 -1.645 10.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.134 4.134 3 C -0.093 4.093 4 C -0.161 4.161 5 C -0.114 4.114 6 C -0.189 4.189 7 C 0.342 3.658 8 O -0.460 6.460 9 N -0.318 5.318 10 C 0.102 3.898 11 C -0.589 4.589 12 H 0.068 0.932 13 C -0.170 4.170 14 N -0.545 5.545 15 Si 0.778 3.222 16 H -0.200 1.200 17 H -0.200 1.200 18 H -0.200 1.200 19 C 0.026 3.974 20 C -0.204 4.204 21 C -0.207 4.207 22 C -0.191 4.191 23 C 0.096 3.904 24 O -0.301 6.301 25 H 0.102 0.898 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.183 0.817 29 H 0.158 0.842 30 H 0.173 0.827 31 H 0.025 0.975 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.121 0.879 41 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -9.973 -1.817 -0.863 10.174 hybrid contribution 1.329 0.194 -0.175 1.355 sum -8.644 -1.623 -1.038 8.856 Atomic orbital electron populations 1.20677 0.87820 1.03784 1.03422 1.20451 0.98493 0.91297 1.03143 1.21480 0.93439 0.98343 0.96027 1.21366 0.95004 0.97982 1.01701 1.22413 1.03094 0.91679 0.94218 1.20435 0.94431 0.93834 1.10181 1.18456 0.80951 0.87765 0.78635 1.90659 1.69759 1.40214 1.45417 1.48041 1.20901 1.10264 1.52641 1.20003 0.94059 0.83225 0.92514 1.21518 1.13421 1.12473 1.11468 0.93227 1.25560 0.99594 0.95922 0.95895 1.70001 1.40849 1.18889 1.24783 0.85635 0.79746 0.77770 0.79045 1.20041 1.20035 1.19967 1.20880 0.96898 0.83785 0.95821 1.22566 1.07627 0.91492 0.98667 1.23012 0.94594 1.00233 1.02856 1.23020 0.95531 0.97332 1.03231 1.18433 0.87485 0.86347 0.98133 1.84717 1.75414 1.35927 1.34034 0.89756 0.91597 0.89399 0.81730 0.84196 0.82687 0.97514 0.91123 0.92010 0.90748 0.91323 0.89136 0.89510 0.87915 0.87021 0.87944 0.74299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.79 71.23 0.70 -1.28 16 2 C -0.13 -3.77 5.89 -19.80 -0.12 -3.88 16 3 C -0.08 -2.01 9.68 22.30 0.22 -1.79 16 4 C -0.14 -4.73 10.02 22.24 0.22 -4.51 16 5 C -0.10 -3.97 7.42 22.52 0.17 -3.81 16 6 C -0.19 -7.80 5.51 -20.01 -0.11 -7.91 16 7 C 0.55 25.59 7.26 86.70 0.63 26.22 16 8 O -0.58 -28.76 15.41 13.08 0.20 -28.56 16 9 N -0.59 -26.80 2.51 -829.93 -2.08 -28.88 16 10 C 0.22 10.89 4.72 85.63 0.40 11.29 16 11 C -0.55 -28.69 7.54 25.60 0.19 -28.49 16 12 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 13 C 0.03 1.66 5.46 84.65 0.46 2.12 16 14 N -0.91 -48.01 13.29 21.45 0.28 -47.72 16 15 Si 0.95 41.05 29.54 68.60 2.03 43.08 16 16 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 17 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 18 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 19 C 0.15 6.03 5.73 86.38 0.49 6.52 16 20 C -0.18 -6.29 6.01 -10.79 -0.06 -6.35 16 21 C -0.17 -4.88 10.18 30.62 0.31 -4.57 16 22 C -0.15 -4.02 10.25 30.62 0.31 -3.71 16 23 C 0.14 5.06 6.65 22.84 0.15 5.21 16 24 O -0.49 -16.47 11.18 -72.68 -0.81 -17.28 16 25 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 1.39 7.53 -2.39 -0.02 1.38 16 27 H 0.09 1.34 8.08 -2.38 -0.02 1.32 16 28 H 0.17 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 30 H 0.16 7.40 4.06 -2.91 -0.01 7.39 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.07 3.52 3.69 -3.17 -0.01 3.51 16 33 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16 34 H 0.07 3.06 7.86 -2.39 -0.02 3.04 16 35 H 0.07 2.83 6.96 -2.39 -0.02 2.81 16 36 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.09 2.64 8.04 -2.39 -0.02 2.62 16 38 H 0.10 2.59 8.14 -2.39 -0.02 2.58 16 39 H 0.11 2.47 8.14 -2.39 -0.02 2.46 16 40 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.40 9.98 9.06 -74.06 -0.67 9.31 16 Total: -1.00 -64.76 341.74 3.97 -60.79 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.38 Total: 33.51 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 3.97 Total: -14.94 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -1.79 Total: -76.60 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.61 Total: -45.85 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -64.76 3.97 -60.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088407680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.036 kcal (2) G-P(sol) polarization free energy of solvation -64.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds