Wall clock time and date at job start Tue Mar 31 2020 05:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53783 * 113.61511 * 2 1 4 4 C 1.53782 * 87.07949 * 89.11711 * 3 2 1 5 5 N 1.46498 * 113.61083 * 139.98217 * 4 3 2 6 6 C 1.34774 * 119.99590 * 155.00065 * 5 4 3 7 7 O 1.21280 * 120.00253 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99715 * 179.72303 * 6 5 4 9 9 C 1.50701 * 109.46980 * 179.97438 * 8 6 5 10 10 C 1.38326 * 119.96521 * 269.72164 * 9 8 6 11 11 C 1.38284 * 120.13448 * 179.76576 * 10 9 8 12 12 C 1.38119 * 120.06875 * 0.51453 * 11 10 9 13 13 C 1.38851 * 119.93566 * 359.73979 * 12 11 10 14 14 O 1.35744 * 120.07421 * 179.97438 * 13 12 11 15 15 C 1.34836 * 116.99888 * 354.49336 * 14 13 12 16 16 H 1.08005 * 119.99870 * 5.05775 * 15 14 13 17 17 C 1.38646 * 120.00005 * 185.05713 * 15 14 13 18 18 N 1.31565 * 120.00124 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00184 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47077 * 90.00256 * 19 17 15 21 21 H 1.48500 * 109.47384 * 209.99802 * 19 17 15 22 22 H 1.48497 * 109.47057 * 330.00071 * 19 17 15 23 23 C 1.38080 * 119.96584 * 89.99830 * 9 8 6 24 24 C 1.53777 * 87.08175 * 25.43142 * 4 3 2 25 25 H 1.09003 * 109.47148 * 59.99665 * 1 2 3 26 26 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46963 * 299.99927 * 1 2 3 28 28 H 1.09007 * 112.84595 * 228.80134 * 2 1 3 29 29 H 1.09002 * 113.61105 * 334.56634 * 3 2 1 30 30 H 1.09002 * 113.61121 * 203.66871 * 3 2 1 31 31 H 1.08998 * 113.61133 * 270.79656 * 4 3 2 32 32 H 0.96997 * 120.00316 * 334.99636 * 5 4 3 33 33 H 1.08997 * 109.47064 * 299.99790 * 8 6 5 34 34 H 1.09004 * 109.47225 * 60.00053 * 8 6 5 35 35 H 1.07995 * 119.93271 * 0.02562 * 10 9 8 36 36 H 1.08003 * 119.96194 * 180.25552 * 11 10 9 37 37 H 1.08004 * 120.02995 * 179.72331 * 12 11 10 38 38 H 0.97000 * 120.00263 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03310 * 359.95983 * 23 9 8 40 40 H 1.08996 * 113.61532 * 89.11783 * 24 4 3 41 41 H 1.09005 * 113.61440 * 220.01492 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0930 1.3467 1.5356 5 7 3.2740 1.9183 2.1872 6 6 3.1852 2.3956 3.4445 7 8 2.1274 2.3525 4.0362 8 6 4.4017 2.9779 4.1171 9 6 4.0367 3.4367 5.5054 10 6 3.5952 4.7313 5.7115 11 6 3.2548 5.1545 6.9832 12 6 3.3649 4.2884 8.0534 13 6 3.8127 2.9899 7.8507 14 8 3.9225 2.1364 8.9006 15 6 3.6908 2.6434 10.1283 16 1 3.3521 3.6633 10.2363 17 6 3.8875 1.8556 11.2521 18 7 3.6620 2.3504 12.4501 19 14 4.4727 0.0915 11.0653 20 1 5.9572 0.0574 11.0871 21 1 3.9425 -0.7273 12.1850 22 1 3.9839 -0.4583 9.7753 23 6 4.1488 2.5661 6.5713 24 6 2.1460 -0.1839 1.3970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9532 -0.6617 -0.7559 29 1 1.4945 2.1704 -0.4289 30 1 3.1591 1.4426 -0.4010 31 1 1.1575 1.7163 1.9555 32 1 4.1200 1.9531 1.7139 33 1 5.1814 2.2187 4.1782 34 1 4.7656 3.8268 3.5382 35 1 3.5122 5.4116 4.8769 36 1 2.9065 6.1647 7.1402 37 1 3.1031 4.6210 9.0470 38 1 3.7992 1.7991 13.2363 39 1 4.4972 1.5566 6.4103 40 1 3.1590 -0.5857 1.3780 41 1 1.4945 -0.7085 2.0959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089846928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:36 Heat of formation + Delta-G solvation = -27.407431 kcal Electronic energy + Delta-G solvation = -22005.987671 eV Core-core repulsion = 18658.954713 eV Total energy + Delta-G solvation = -3347.032957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.35056 -39.24364 -38.41812 -36.54375 -33.75036 -32.38221 -32.02912 -29.47736 -29.06382 -27.06275 -26.00812 -25.13202 -23.56995 -21.76583 -21.11631 -20.19049 -19.11260 -17.67382 -17.21346 -16.97239 -16.65476 -15.46093 -15.13386 -14.96827 -14.51757 -14.27520 -14.00865 -13.76951 -13.69400 -13.40389 -13.16866 -12.81502 -12.65826 -12.51703 -12.39561 -12.13638 -11.87415 -11.57460 -11.40083 -11.26079 -10.80948 -10.76044 -10.71503 -10.67300 -10.51355 -10.11533 -9.70592 -9.33632 -9.07173 -8.82116 -8.08732 -7.30021 -6.36067 -4.02651 2.07068 2.34551 2.74045 3.21561 3.26820 3.28773 3.44920 4.18739 4.21544 4.28678 4.49093 4.53278 4.59196 4.78345 4.96273 5.10508 5.12354 5.21111 5.29905 5.31894 5.36126 5.41818 5.48384 5.57854 5.60498 5.73192 5.76256 5.79708 5.89238 5.90305 6.09677 6.17531 6.30931 6.45195 6.58654 6.84712 7.15710 7.26910 7.37249 7.46762 7.66880 7.86550 8.10058 8.31744 8.99635 9.63085 10.71880 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.003272 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.186431 B = 8554.784697 C = 9403.894517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.124 3.876 5 N -0.730 5.730 6 C 0.513 3.487 7 O -0.519 6.519 8 C -0.095 4.095 9 C -0.035 4.035 10 C -0.188 4.188 11 C -0.076 4.076 12 C -0.218 4.218 13 C 0.160 3.840 14 O -0.220 6.220 15 C -0.388 4.388 16 H 0.106 0.894 17 C 0.063 3.937 18 N -0.882 5.882 19 Si 0.905 3.095 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.260 1.260 23 C -0.174 4.174 24 C -0.151 4.151 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.114 0.886 32 H 0.398 0.602 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.132 0.868 38 H 0.279 0.721 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -1.783 -25.450 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C -0.182 4.182 4 C 0.019 3.981 5 N -0.382 5.382 6 C 0.300 3.700 7 O -0.393 6.393 8 C -0.135 4.135 9 C -0.035 4.035 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.237 4.237 13 C 0.109 3.891 14 O -0.125 6.125 15 C -0.463 4.463 16 H 0.123 0.877 17 C -0.140 4.140 18 N -0.521 5.521 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.194 4.194 24 C -0.190 4.190 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.132 0.868 32 H 0.232 0.768 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.448 -2.087 -24.722 24.814 hybrid contribution 0.613 -0.619 -0.069 0.874 sum 0.165 -2.706 -24.791 24.939 Atomic orbital electron populations 1.21639 0.93656 1.02101 1.02178 1.22163 0.96041 0.97112 0.97843 1.23421 1.01608 0.97608 0.95599 1.22497 0.90573 0.93148 0.91859 1.46051 1.12881 1.63620 1.15658 1.20803 0.90780 0.77351 0.81089 1.90754 1.30307 1.54763 1.63504 1.20605 0.96191 1.01977 0.94698 1.18664 0.99269 0.93755 0.91852 1.20419 1.07940 0.95721 0.96647 1.20735 0.97844 0.98421 0.92432 1.21292 1.07866 0.94384 1.00169 1.19006 0.93116 0.89095 0.87902 1.83569 1.78914 1.35801 1.14225 1.20767 1.45905 1.00718 0.78948 0.87660 1.24449 0.96228 0.99796 0.93543 1.69651 1.47379 1.37611 0.97426 0.86192 0.79258 0.82983 0.78544 1.19924 1.20818 1.18373 1.19941 1.09311 0.99812 0.90318 1.23524 1.01588 0.97063 0.96823 0.92284 0.92252 0.92150 0.90235 0.90804 0.89715 0.86849 0.76772 0.88290 0.88342 0.87751 0.87185 0.84998 0.91137 0.86873 0.89812 0.90881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.59 37.16 0.36 -0.59 16 2 C -0.11 -0.78 4.55 -89.81 -0.41 -1.18 16 3 C -0.14 -0.97 7.42 -25.92 -0.19 -1.16 16 4 C 0.12 1.19 3.89 -67.12 -0.26 0.93 16 5 N -0.73 -7.15 5.35 -53.02 -0.28 -7.44 16 6 C 0.51 7.16 7.82 -10.98 -0.09 7.08 16 7 O -0.52 -9.93 15.63 5.56 0.09 -9.84 16 8 C -0.09 -1.20 5.83 -29.03 -0.17 -1.37 16 9 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 10 C -0.19 -3.35 9.70 -39.53 -0.38 -3.73 16 11 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 12 C -0.22 -4.96 9.17 -39.40 -0.36 -5.32 16 13 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 14 O -0.22 -6.04 8.59 0.05 0.00 -6.04 16 15 C -0.39 -11.28 9.95 30.88 0.31 -10.97 16 16 H 0.11 3.12 5.44 -52.48 -0.29 2.84 16 17 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 18 N -0.88 -26.07 13.96 55.48 0.77 -25.29 16 19 Si 0.90 22.25 28.62 -169.99 -4.86 17.39 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.17 -3.67 9.65 -39.39 -0.38 -4.05 16 24 C -0.15 -1.31 7.44 -25.92 -0.19 -1.50 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 28 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.07 0.49 8.10 -51.93 -0.42 0.06 16 30 H 0.08 0.46 8.12 -51.93 -0.42 0.03 16 31 H 0.11 1.35 6.98 -51.93 -0.36 0.99 16 32 H 0.40 2.57 8.73 -40.82 -0.36 2.21 16 33 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.13 3.12 5.64 -52.48 -0.30 2.83 16 38 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -33.75 344.68 -7.95 -41.70 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.88 Total: 3.78 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.98 Total: -19.46 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.49 Total: -32.73 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.09 Total: -15.88 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.86 Total: 17.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.75 -7.95 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089846928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.297 kcal (2) G-P(sol) polarization free energy of solvation -33.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds