Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53783 * 113.61511 * 2 1 4 4 C 1.53782 * 87.07949 * 89.11711 * 3 2 1 5 5 N 1.46498 * 113.61083 * 139.98217 * 4 3 2 6 6 C 1.34774 * 119.99590 * 155.00065 * 5 4 3 7 7 O 1.21280 * 120.00253 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99715 * 179.72303 * 6 5 4 9 9 C 1.50701 * 109.46980 * 179.97438 * 8 6 5 10 10 C 1.38326 * 119.96521 * 269.72164 * 9 8 6 11 11 C 1.38284 * 120.13448 * 179.76576 * 10 9 8 12 12 C 1.38119 * 120.06875 * 0.51453 * 11 10 9 13 13 C 1.38851 * 119.93566 * 359.73979 * 12 11 10 14 14 O 1.35744 * 120.07421 * 179.97438 * 13 12 11 15 15 C 1.34836 * 116.99888 * 354.49336 * 14 13 12 16 16 H 1.08005 * 119.99870 * 5.05775 * 15 14 13 17 17 C 1.38646 * 120.00005 * 185.05713 * 15 14 13 18 18 N 1.31565 * 120.00124 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00184 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47077 * 90.00256 * 19 17 15 21 21 H 1.48500 * 109.47384 * 209.99802 * 19 17 15 22 22 H 1.48497 * 109.47057 * 330.00071 * 19 17 15 23 23 C 1.38080 * 119.96584 * 89.99830 * 9 8 6 24 24 C 1.53777 * 87.08175 * 25.43142 * 4 3 2 25 25 H 1.09003 * 109.47148 * 59.99665 * 1 2 3 26 26 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46963 * 299.99927 * 1 2 3 28 28 H 1.09007 * 112.84595 * 228.80134 * 2 1 3 29 29 H 1.09002 * 113.61105 * 334.56634 * 3 2 1 30 30 H 1.09002 * 113.61121 * 203.66871 * 3 2 1 31 31 H 1.08998 * 113.61133 * 270.79656 * 4 3 2 32 32 H 0.96997 * 120.00316 * 334.99636 * 5 4 3 33 33 H 1.08997 * 109.47064 * 299.99790 * 8 6 5 34 34 H 1.09004 * 109.47225 * 60.00053 * 8 6 5 35 35 H 1.07995 * 119.93271 * 0.02562 * 10 9 8 36 36 H 1.08003 * 119.96194 * 180.25552 * 11 10 9 37 37 H 1.08004 * 120.02995 * 179.72331 * 12 11 10 38 38 H 0.97000 * 120.00263 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03310 * 359.95983 * 23 9 8 40 40 H 1.08996 * 113.61532 * 89.11783 * 24 4 3 41 41 H 1.09005 * 113.61440 * 220.01492 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 2.0930 1.3467 1.5356 5 7 3.2740 1.9183 2.1872 6 6 3.1852 2.3956 3.4445 7 8 2.1274 2.3525 4.0362 8 6 4.4017 2.9779 4.1171 9 6 4.0367 3.4367 5.5054 10 6 3.5952 4.7313 5.7115 11 6 3.2548 5.1545 6.9832 12 6 3.3649 4.2884 8.0534 13 6 3.8127 2.9899 7.8507 14 8 3.9225 2.1364 8.9006 15 6 3.6908 2.6434 10.1283 16 1 3.3521 3.6633 10.2363 17 6 3.8875 1.8556 11.2521 18 7 3.6620 2.3504 12.4501 19 14 4.4727 0.0915 11.0653 20 1 5.9572 0.0574 11.0871 21 1 3.9425 -0.7273 12.1850 22 1 3.9839 -0.4583 9.7753 23 6 4.1488 2.5661 6.5713 24 6 2.1460 -0.1839 1.3970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9532 -0.6617 -0.7559 29 1 1.4945 2.1704 -0.4289 30 1 3.1591 1.4426 -0.4010 31 1 1.1575 1.7163 1.9555 32 1 4.1200 1.9531 1.7139 33 1 5.1814 2.2187 4.1782 34 1 4.7656 3.8268 3.5382 35 1 3.5122 5.4116 4.8769 36 1 2.9065 6.1647 7.1402 37 1 3.1031 4.6210 9.0470 38 1 3.7992 1.7991 13.2363 39 1 4.4972 1.5566 6.4103 40 1 3.1590 -0.5857 1.3780 41 1 1.4945 -0.7085 2.0959 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089846928.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = -49.504412 kcal Electronic energy + Delta-G solvation = -22006.945868 eV Core-core repulsion = 18658.954713 eV Total energy + Delta-G solvation = -3347.991155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.33682 -40.75925 -39.53254 -38.20765 -34.71207 -34.48614 -33.42803 -31.10251 -29.88956 -28.31508 -27.17801 -26.61382 -24.41768 -23.33261 -22.56008 -21.43223 -19.86933 -19.60543 -18.85593 -17.97360 -17.57963 -16.87800 -16.76912 -16.14700 -15.78520 -15.64355 -15.48508 -15.31555 -14.87612 -14.52218 -14.36453 -14.15481 -14.02587 -13.86068 -13.44233 -13.25226 -13.04564 -12.83054 -12.53461 -12.47321 -12.41916 -12.34759 -12.00471 -11.93639 -11.32689 -11.31799 -11.17908 -10.93574 -10.81334 -9.94488 -9.66753 -9.06976 -8.51244 -6.24108 0.48460 0.69598 1.28582 1.33373 1.50189 1.69989 2.27051 2.29837 2.78725 3.04674 3.14770 3.56508 3.63873 3.77041 3.89745 3.92662 4.07353 4.14485 4.29982 4.44092 4.54467 4.55830 4.63205 4.65424 4.70422 4.76182 4.79545 4.93406 4.97077 5.01120 5.12796 5.14353 5.24951 5.32347 5.38603 5.47592 5.64573 5.67035 5.72124 5.75994 5.90943 6.24696 6.65722 6.83058 7.37302 7.58048 8.60722 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.003272 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.186431 B = 8554.784697 C = 9403.894517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.127 4.127 4 C 0.110 3.890 5 N -0.707 5.707 6 C 0.512 3.488 7 O -0.583 6.583 8 C -0.091 4.091 9 C -0.028 4.028 10 C -0.172 4.172 11 C -0.078 4.078 12 C -0.242 4.242 13 C 0.119 3.881 14 O -0.247 6.247 15 C -0.400 4.400 16 H 0.080 0.920 17 C 0.009 3.991 18 N -0.924 5.924 19 Si 0.971 3.029 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.268 1.268 23 C -0.182 4.182 24 C -0.154 4.154 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.419 0.581 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.107 0.893 38 H 0.285 0.715 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 -1.998 -29.897 30.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.165 4.165 4 C 0.005 3.995 5 N -0.360 5.360 6 C 0.300 3.700 7 O -0.462 6.462 8 C -0.130 4.130 9 C -0.029 4.029 10 C -0.190 4.190 11 C -0.096 4.096 12 C -0.261 4.261 13 C 0.070 3.930 14 O -0.155 6.155 15 C -0.477 4.477 16 H 0.097 0.903 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.793 3.207 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.192 1.192 23 C -0.202 4.202 24 C -0.193 4.193 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.257 0.743 33 H 0.145 0.855 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.125 0.875 38 H 0.095 0.905 39 H 0.139 0.861 40 H 0.114 0.886 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.212 -2.285 -29.252 29.366 hybrid contribution 0.058 -0.380 1.005 1.076 sum 1.271 -2.665 -28.247 28.401 Atomic orbital electron populations 1.21665 0.94065 1.02222 1.01894 1.22153 0.95758 0.97679 0.96905 1.23382 1.03060 0.97379 0.92658 1.22579 0.89335 0.93745 0.93867 1.45869 1.13975 1.61755 1.14370 1.21022 0.90136 0.76987 0.81902 1.90754 1.32595 1.57680 1.65197 1.20723 0.96148 1.04538 0.91570 1.19258 0.96745 0.93184 0.93706 1.21023 1.04603 0.96345 0.97022 1.21120 0.97097 0.99229 0.92170 1.21322 1.09356 0.94980 1.00447 1.19597 0.95110 0.89851 0.88452 1.83506 1.81266 1.36729 1.14019 1.20721 1.46418 1.00078 0.80447 0.90296 1.25285 0.96461 1.04061 0.93053 1.69733 1.49208 1.39397 0.98192 0.85213 0.79328 0.77769 0.78348 1.18555 1.19000 1.19250 1.20282 1.09131 1.00937 0.89801 1.23560 1.02014 0.96020 0.97663 0.91049 0.92014 0.93936 0.88424 0.90403 0.87269 0.89915 0.74297 0.85508 0.83824 0.83363 0.84169 0.87516 0.90536 0.86111 0.88608 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.59 71.98 0.69 -1.05 16 2 C -0.11 -1.18 4.55 -10.27 -0.05 -1.23 16 3 C -0.13 -1.26 7.42 31.12 0.23 -1.03 16 4 C 0.11 1.90 3.89 45.52 0.18 2.07 16 5 N -0.71 -11.44 5.35 -440.05 -2.36 -13.79 16 6 C 0.51 12.82 7.82 87.66 0.69 13.50 16 7 O -0.58 -21.87 15.63 -3.03 -0.05 -21.92 16 8 C -0.09 -1.86 5.83 29.10 0.17 -1.69 16 9 C -0.03 -0.93 4.37 -19.88 -0.09 -1.02 16 10 C -0.17 -5.53 9.70 22.30 0.22 -5.31 16 11 C -0.08 -2.93 10.04 22.25 0.22 -2.71 16 12 C -0.24 -11.51 9.17 22.39 0.21 -11.31 16 13 C 0.12 6.01 6.65 22.58 0.15 6.16 16 14 O -0.25 -14.32 8.59 -22.74 -0.20 -14.52 16 15 C -0.40 -24.81 9.95 67.92 0.68 -24.14 16 16 H 0.08 5.12 5.44 -2.91 -0.02 5.11 16 17 C 0.01 0.57 5.49 84.83 0.47 1.04 16 18 N -0.92 -57.01 13.96 21.61 0.30 -56.71 16 19 Si 0.97 47.25 28.62 68.60 1.96 49.21 16 20 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 23 C -0.18 -7.61 9.65 22.39 0.22 -7.39 16 24 C -0.15 -2.41 7.44 31.12 0.23 -2.17 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.04 0.67 7.34 -2.39 -0.02 0.65 16 28 H 0.10 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.08 0.76 8.10 -2.39 -0.02 0.74 16 30 H 0.11 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.08 1.99 6.98 -2.39 -0.02 1.97 16 32 H 0.42 3.30 8.73 -92.71 -0.81 2.49 16 33 H 0.13 2.00 8.08 -2.39 -0.02 1.98 16 34 H 0.14 1.74 8.08 -2.38 -0.02 1.72 16 35 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 36 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.11 5.53 5.64 -2.91 -0.02 5.51 16 38 H 0.29 16.06 8.31 -92.71 -0.77 15.29 16 39 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 Total: -1.00 -80.26 344.68 4.10 -76.16 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.23 Total: 17.85 kcal Atomic # 6 Polarization: -40.48 SS G_CDS: 4.20 Total: -36.28 kcal Atomic # 7 Polarization: -68.45 SS G_CDS: -2.05 Total: -70.51 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.24 Total: -36.44 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.96 Total: 49.21 kcal Total: -80.26 4.10 -76.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089846928.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.660 kcal (2) G-P(sol) polarization free energy of solvation -80.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds