Wall clock time and date at job start Tue Mar 31 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50702 * 110.02035 * 2 1 4 4 O 1.21289 * 120.00068 * 239.29972 * 3 2 1 5 5 N 1.34771 * 120.00041 * 59.29552 * 3 2 1 6 6 C 1.39921 * 120.00144 * 185.22226 * 5 3 2 7 7 C 1.38962 * 120.03926 * 33.65513 * 6 5 3 8 8 C 1.38155 * 120.06727 * 179.97438 * 7 6 5 9 9 C 1.38161 * 120.14136 * 0.28194 * 8 7 6 10 10 C 1.38906 * 120.06985 * 359.48690 * 9 8 7 11 11 O 1.35751 * 120.03352 * 180.23465 * 10 9 8 12 12 C 1.34837 * 117.00052 * 186.15784 * 11 10 9 13 13 H 1.08003 * 119.99966 * 5.39728 * 12 11 10 14 14 C 1.38649 * 120.00057 * 185.40028 * 12 11 10 15 15 N 1.31558 * 120.00193 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00076 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47068 * 90.00192 * 16 14 12 18 18 H 1.48499 * 109.47149 * 210.00223 * 16 14 12 19 19 H 1.48501 * 109.47205 * 329.99872 * 16 14 12 20 20 C 1.38717 * 120.03672 * 213.67947 * 6 5 3 21 21 C 1.54270 * 110.03170 * 121.39191 * 2 1 3 22 22 C 1.54966 * 104.16014 * 95.75309 * 21 2 1 23 23 C 1.54889 * 102.77724 * 37.88940 * 22 21 2 24 24 C 1.53876 * 110.03416 * 238.60871 * 2 1 3 25 25 H 1.08997 * 109.47005 * 60.69901 * 1 2 3 26 26 H 1.08997 * 109.46905 * 180.69963 * 1 2 3 27 27 H 1.08994 * 109.47124 * 300.70302 * 1 2 3 28 28 H 0.97003 * 120.00152 * 5.22271 * 5 3 2 29 29 H 1.08004 * 119.96026 * 0.02562 * 7 6 5 30 30 H 1.08002 * 119.92581 * 180.02562 * 8 7 6 31 31 H 1.08002 * 119.96264 * 179.74137 * 9 8 7 32 32 H 0.97004 * 120.00211 * 179.97438 * 15 14 12 33 33 H 1.08007 * 120.06785 * 359.95608 * 20 6 5 34 34 H 1.09001 * 110.48239 * 214.40492 * 21 2 1 35 35 H 1.09001 * 110.48609 * 337.04142 * 21 2 1 36 36 H 1.08995 * 110.71633 * 279.57362 * 22 21 2 37 37 H 1.09008 * 110.91811 * 156.29495 * 22 21 2 38 38 H 1.08997 * 110.48772 * 203.40508 * 23 22 21 39 39 H 1.09007 * 110.48564 * 80.76220 * 23 22 21 40 40 H 1.09002 * 110.02902 * 359.95129 * 24 2 1 41 41 H 1.08998 * 110.03488 * 121.33734 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0459 1.4160 0.0000 4 8 2.7574 1.8022 -0.9032 5 7 1.7167 2.2531 1.0035 6 6 2.1039 3.5966 0.9494 7 6 2.1700 4.2528 -0.2738 8 6 2.5517 5.5794 -0.3278 9 6 2.8745 6.2563 0.8326 10 6 2.8058 5.6074 2.0588 11 8 3.1185 6.2746 3.1990 12 6 3.1552 5.5551 4.3388 13 1 3.0273 4.4832 4.3051 14 6 3.3570 6.1913 5.5540 15 7 3.5132 7.4970 5.5951 16 14 3.4071 5.1947 7.1331 17 1 4.8035 4.7697 7.4061 18 1 2.9138 6.0270 8.2596 19 1 2.5438 3.9951 6.9889 20 6 2.4227 4.2749 2.1167 21 6 2.0584 -0.7550 1.2372 22 6 2.3298 -2.1898 0.7185 23 6 2.8884 -1.9397 -0.7043 24 6 2.0571 -0.7530 -1.2340 25 1 -0.3633 0.5029 -0.8962 26 1 -0.3633 -1.0276 0.0125 27 1 -0.3633 0.5247 0.8836 28 1 1.2112 1.9243 1.7634 29 1 1.9218 3.7252 -1.1829 30 1 2.6019 6.0873 -1.2797 31 1 3.1766 7.2922 0.7865 32 1 3.6541 7.9421 6.4453 33 1 2.3718 3.7673 3.0686 34 1 2.9806 -0.2988 1.5973 35 1 1.3058 -0.7694 2.0255 36 1 1.4052 -2.7653 0.6748 37 1 3.0687 -2.6952 1.3403 38 1 2.7415 -2.8187 -1.3319 39 1 3.9449 -1.6750 -0.6583 40 1 1.2229 -1.1192 -1.8325 41 1 2.6854 -0.0941 -1.8334 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107236787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:22 Heat of formation + Delta-G solvation = -53.070595 kcal Electronic energy + Delta-G solvation = -22788.859196 eV Core-core repulsion = 19440.713400 eV Total energy + Delta-G solvation = -3348.145796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73876 -38.98107 -37.64159 -36.26237 -34.28536 -32.26442 -31.60316 -29.34556 -28.87363 -28.40842 -25.85226 -25.28997 -23.09222 -21.81701 -20.97566 -20.68288 -19.16498 -17.90242 -17.65735 -16.91477 -15.78511 -15.35597 -15.25573 -15.06282 -14.57384 -14.21437 -14.10353 -13.86709 -13.54784 -13.52280 -12.98372 -12.85376 -12.64313 -12.37992 -11.75922 -11.73939 -11.57936 -11.36972 -11.24416 -11.13136 -11.08080 -10.99298 -10.87884 -10.72129 -10.66067 -10.45477 -9.84411 -9.52855 -9.35130 -8.80753 -7.72761 -7.15718 -6.45632 -4.05407 1.96873 2.37375 2.87563 3.11092 3.11842 3.16131 3.26753 3.95095 4.21563 4.34754 4.50042 4.61059 4.92441 4.99669 5.08596 5.10498 5.19663 5.27233 5.27896 5.42669 5.54572 5.60185 5.63234 5.71882 5.74930 5.80403 5.89878 5.98724 6.02323 6.07174 6.12423 6.19175 6.27149 6.30066 6.63814 6.97921 6.99838 7.12388 7.30842 7.41816 7.71572 7.81678 7.98658 8.33976 8.99789 9.70353 10.72463 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.004178 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.453198 B = 6700.413220 C = 7921.086620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 C 0.521 3.479 4 O -0.519 6.519 5 N -0.667 5.667 6 C 0.180 3.820 7 C -0.206 4.206 8 C -0.063 4.063 9 C -0.201 4.201 10 C 0.168 3.832 11 O -0.176 6.176 12 C -0.392 4.392 13 H 0.090 0.910 14 C 0.040 3.960 15 N -0.862 5.862 16 Si 0.940 3.060 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.268 1.268 20 C -0.257 4.257 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.115 4.115 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.405 0.595 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.270 0.730 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -17.300 -8.394 20.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C 0.308 3.692 4 O -0.394 6.394 5 N -0.311 5.311 6 C 0.087 3.913 7 C -0.226 4.226 8 C -0.082 4.082 9 C -0.220 4.220 10 C 0.114 3.886 11 O -0.080 6.080 12 C -0.468 4.468 13 H 0.107 0.893 14 C -0.164 4.164 15 N -0.497 5.497 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.193 1.193 20 C -0.278 4.278 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.162 4.162 24 C -0.153 4.153 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.241 0.759 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.296 -16.639 -8.832 19.569 hybrid contribution -0.257 -0.660 1.305 1.485 sum -5.553 -17.299 -7.528 19.667 Atomic orbital electron populations 1.21889 0.92185 1.02733 1.02625 1.21429 0.97143 0.91860 0.98209 1.20577 0.79860 0.87118 0.81637 1.90679 1.35870 1.76940 1.35876 1.43500 1.55681 1.08372 1.23551 1.17436 0.97530 0.82082 0.94226 1.20523 1.10969 0.94936 0.96216 1.20526 0.97260 0.93580 0.96841 1.20245 1.10904 1.00737 0.90162 1.19082 0.91390 0.90026 0.88086 1.84020 1.75492 1.35825 1.12644 1.21267 1.51692 0.91636 0.82252 0.89292 1.25268 0.96603 0.96056 0.98515 1.70037 1.44951 1.07906 1.26822 0.85732 0.78851 0.78872 0.80067 1.19887 1.20237 1.19306 1.20823 1.13034 0.96453 0.97508 1.22510 1.01574 0.95596 0.95767 1.22485 1.00933 0.96041 0.96443 1.22362 0.99903 0.97792 0.96110 1.22241 1.00189 0.96845 0.96004 0.91953 0.91275 0.92035 0.75948 0.86443 0.86634 0.86384 0.92016 0.85296 0.90916 0.90607 0.91320 0.91331 0.91563 0.91478 0.91304 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.05 37.16 0.30 -0.88 16 2 C -0.08 -0.89 0.78 -154.54 -0.12 -1.01 16 3 C 0.52 7.79 6.09 -10.99 -0.07 7.72 16 4 O -0.52 -9.61 12.91 5.55 0.07 -9.54 16 5 N -0.67 -10.24 5.15 -9.88 -0.05 -10.30 16 6 C 0.18 3.50 6.27 -83.72 -0.52 2.97 16 7 C -0.21 -4.01 8.65 -39.34 -0.34 -4.35 16 8 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 9 C -0.20 -4.36 9.99 -39.36 -0.39 -4.75 16 10 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 11 O -0.18 -5.04 9.76 0.02 0.00 -5.04 16 12 C -0.39 -10.89 9.44 30.88 0.29 -10.60 16 13 H 0.09 2.28 5.30 -52.48 -0.28 2.00 16 14 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 15 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 16 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.26 -5.61 9.04 -39.21 -0.35 -5.96 16 21 C -0.12 -1.09 5.78 -25.03 -0.14 -1.24 16 22 C -0.12 -0.97 6.91 -24.70 -0.17 -1.14 16 23 C -0.12 -1.10 6.83 -25.07 -0.17 -1.27 16 24 C -0.12 -1.19 6.06 -25.61 -0.16 -1.35 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.49 7.68 -51.93 -0.40 0.09 16 28 H 0.41 5.05 8.31 -40.82 -0.34 4.71 16 29 H 0.12 2.24 6.44 -52.48 -0.34 1.90 16 30 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.13 2.76 5.72 -52.48 -0.30 2.46 16 34 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 35 H 0.08 0.59 7.84 -51.93 -0.41 0.18 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.61 7.67 -51.93 -0.40 0.21 16 41 H 0.09 1.16 6.39 -51.93 -0.33 0.83 16 LS Contribution 334.87 15.07 5.05 5.05 Total: -1.00 -32.30 334.87 -7.52 -39.81 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.72 Total: 7.78 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -2.60 Total: -18.61 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.71 Total: -34.73 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.07 Total: -14.57 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.30 -7.52 -39.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107236787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.257 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds