Wall clock time and date at job start Tue Mar 31 2020 06:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47328 * 60.00126 * 4 3 2 6 6 C 1.52997 * 109.46975 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.47321 * 184.99627 * 6 5 4 8 8 S 1.65596 * 120.00278 * 164.99789 * 7 6 5 9 9 O 1.42094 * 104.27576 * 181.07460 * 8 7 6 10 10 O 1.42102 * 104.27453 * 308.93327 * 8 7 6 11 11 C 1.81400 * 104.44823 * 65.00141 * 8 7 6 12 12 C 1.53006 * 109.46973 * 179.97438 * 11 8 7 13 13 C 1.50702 * 109.46867 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99930 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00310 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47154 * 89.99155 * 17 15 13 19 19 H 1.48496 * 109.47443 * 209.99814 * 17 15 13 20 20 H 1.48509 * 109.46957 * 329.99803 * 17 15 13 21 21 C 1.53002 * 109.46891 * 299.99597 * 5 4 3 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 5 4 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 31 31 H 1.08992 * 109.47554 * 59.99639 * 5 4 3 32 32 H 1.08994 * 109.47445 * 304.99750 * 6 5 4 33 33 H 1.09000 * 109.47459 * 65.00057 * 6 5 4 34 34 H 0.97003 * 119.99345 * 345.00549 * 7 6 5 35 35 H 1.08996 * 109.47378 * 300.00003 * 11 8 7 36 36 H 1.09001 * 109.46899 * 60.00446 * 11 8 7 37 37 H 1.08996 * 109.47129 * 300.00227 * 12 11 8 38 38 H 1.09001 * 109.46885 * 60.00509 * 12 11 8 39 39 H 0.96999 * 120.00203 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47097 * 180.02562 * 21 5 4 41 41 H 1.09001 * 109.47142 * 300.00176 * 21 5 4 42 42 H 1.09001 * 109.47375 * 59.99908 * 22 21 5 43 43 H 1.09000 * 109.47140 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0795 0.7213 -1.2502 6 6 5.6094 0.7207 -1.2504 7 7 6.0974 0.1370 -2.5025 8 16 7.6794 0.3382 -2.9486 9 8 7.7779 -0.3275 -4.2001 10 8 7.8975 1.7385 -2.8444 11 6 8.6239 -0.5493 -1.6794 12 6 10.1190 -0.4366 -1.9843 13 6 10.9036 -1.1745 -0.9302 14 1 10.3876 -1.6735 -0.1233 15 6 12.2804 -1.2116 -0.9954 16 7 12.9088 -0.6035 -1.9777 17 14 13.2530 -2.1255 0.3115 18 1 13.4428 -3.5370 -0.1093 19 1 14.5782 -1.4783 0.4854 20 1 12.5111 -2.0879 1.5975 21 6 3.5694 -0.7212 -1.2501 22 6 2.0395 -0.7212 -1.2496 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9334 2.4700 -0.0002 30 1 3.9337 0.9284 0.8891 31 1 3.7158 1.2352 -2.1399 32 1 5.9732 1.7442 -1.1606 33 1 5.9727 0.1308 -0.4089 34 1 5.4937 -0.3671 -3.0702 35 1 8.4182 -0.1132 -0.7020 36 1 8.3321 -1.5996 -1.6774 37 1 10.3244 -0.8731 -2.9617 38 1 10.4112 0.6135 -1.9866 39 1 13.8773 -0.6298 -2.0238 40 1 3.9328 -1.2351 -2.1401 41 1 3.9331 -1.2352 -0.3603 42 1 1.6758 -0.2072 -2.1393 43 1 1.6761 -1.7488 -1.2500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111332477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:55 Heat of formation + Delta-G solvation = -122.103987 kcal Electronic energy + Delta-G solvation = -21372.508052 eV Core-core repulsion = 18156.812695 eV Total energy + Delta-G solvation = -3215.695357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = -0.52 seconds Orbital eigenvalues (eV) -39.36399 -36.56721 -35.64487 -35.35363 -33.87962 -32.25211 -31.14942 -30.98295 -27.62545 -25.58870 -24.06864 -22.92313 -21.65491 -20.87873 -19.99979 -18.84824 -17.42238 -16.59628 -16.07100 -15.71169 -15.28642 -14.80022 -14.55398 -14.51640 -14.44375 -14.18024 -13.63415 -13.31479 -13.26755 -12.56532 -12.42157 -12.40255 -12.19500 -11.73777 -11.62453 -11.56171 -11.46375 -11.41300 -11.25585 -11.07902 -11.06049 -10.94696 -10.68702 -10.41475 -10.37356 -10.30210 -10.21002 -9.76896 -9.44862 -8.98936 -8.49839 -6.11929 -4.17460 0.83520 3.19677 3.26291 3.32467 3.35179 4.25998 4.34768 4.38483 4.42612 4.47524 4.70861 4.81967 4.89063 4.95145 5.17463 5.22980 5.23352 5.27563 5.29334 5.37804 5.41591 5.48862 5.54170 5.66169 5.69421 5.72934 5.76465 5.81346 5.88572 5.92239 5.99011 6.01980 6.08786 6.18223 6.29435 6.50682 7.13979 7.31407 7.37804 7.81101 8.18392 8.86014 9.47238 10.99170 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.003299 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.292698 B = 8485.847755 C = 9109.810561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.113 4.113 4 C -0.116 4.116 5 C -0.092 4.092 6 C 0.118 3.882 7 N -1.128 6.128 8 S 2.594 3.406 9 O -0.969 6.969 10 O -0.968 6.968 11 C -0.589 4.589 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.891 5.891 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.118 4.118 22 C -0.114 4.114 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.411 0.589 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.622 1.312 4.431 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.150 4.150 4 C -0.154 4.154 5 C -0.112 4.112 6 C -0.008 4.008 7 N -0.885 5.885 8 S 2.691 3.309 9 O -0.960 6.960 10 O -0.958 6.958 11 C -0.723 4.723 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.529 5.529 17 Si 0.727 3.273 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.155 4.155 22 C -0.152 4.152 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.244 0.756 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.054 1.974 3.697 23.432 hybrid contribution 0.339 -1.128 1.025 1.561 sum -22.715 0.846 4.721 23.215 Atomic orbital electron populations 1.21836 0.95507 1.01553 1.01629 1.21160 0.95181 0.96289 0.98611 1.21576 0.95362 0.96217 1.01866 1.21557 0.95523 1.00713 0.97601 1.21352 0.93791 0.96743 0.99344 1.21350 0.94948 0.98985 0.85565 1.55798 1.29793 1.70133 1.32819 1.05485 0.73373 0.75581 0.76433 1.93547 1.85245 1.76984 1.40202 1.93535 1.84456 1.30421 1.87392 1.30439 1.12952 1.12923 1.15975 1.18963 0.84111 0.99122 0.98951 1.21011 0.91154 1.33770 1.10029 0.92061 1.25072 0.97896 0.95528 0.96024 1.69955 1.08961 1.42693 1.31269 0.86468 0.79356 0.79773 0.81667 1.20481 1.21010 1.19761 1.21629 0.95312 0.96139 1.02458 1.21595 0.95528 1.00220 0.97820 0.92799 0.92833 0.92837 0.91217 0.92003 0.91989 0.91431 0.91504 0.90354 0.90210 0.91748 0.75554 0.86365 0.86150 0.94851 0.94823 0.92531 0.91667 0.91524 0.92020 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.19 37.15 0.34 -0.57 16 2 C -0.09 -0.65 2.72 -90.62 -0.25 -0.89 16 3 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16 4 C -0.12 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.09 -0.81 2.30 -90.62 -0.21 -1.02 16 6 C 0.12 1.29 5.52 -4.04 -0.02 1.27 16 7 N -1.13 -14.37 5.76 -10.61 -0.06 -14.43 16 8 S 2.59 46.22 5.46 -107.50 -0.59 45.64 16 9 O -0.97 -20.22 18.08 -57.54 -1.04 -21.26 16 10 O -0.97 -20.18 17.50 -57.54 -1.01 -21.18 16 11 C -0.59 -11.21 6.01 37.16 0.22 -10.99 16 12 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 13 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 17 Si 0.90 21.24 29.54 -169.99 -5.02 16.21 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.12 -0.96 5.07 -26.73 -0.14 -1.09 16 22 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.93 7.69 -51.93 -0.40 0.53 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.41 4.47 7.37 -34.47 -0.25 4.22 16 35 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.06 0.53 6.90 -51.93 -0.36 0.17 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -34.24 353.34 -10.41 -44.64 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.74 Total: -0.20 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -1.01 Total: -28.87 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.68 Total: -40.31 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -2.05 Total: -42.44 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 46.22 SS G_CDS: -0.59 Total: 45.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.24 -10.41 -44.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111332477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.459 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.51 seconds