Wall clock time and date at job start Tue Mar 31 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47328 * 60.00126 * 4 3 2 6 6 C 1.52997 * 109.46975 * 180.02562 * 5 4 3 7 7 N 1.46507 * 109.47321 * 184.99627 * 6 5 4 8 8 S 1.65596 * 120.00278 * 164.99789 * 7 6 5 9 9 O 1.42094 * 104.27576 * 181.07460 * 8 7 6 10 10 O 1.42102 * 104.27453 * 308.93327 * 8 7 6 11 11 C 1.81400 * 104.44823 * 65.00141 * 8 7 6 12 12 C 1.53006 * 109.46973 * 179.97438 * 11 8 7 13 13 C 1.50702 * 109.46867 * 180.02562 * 12 11 8 14 14 H 1.08004 * 120.00170 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99930 * 180.02562 * 13 12 11 16 16 N 1.31513 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00310 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47154 * 89.99155 * 17 15 13 19 19 H 1.48496 * 109.47443 * 209.99814 * 17 15 13 20 20 H 1.48509 * 109.46957 * 329.99803 * 17 15 13 21 21 C 1.53002 * 109.46891 * 299.99597 * 5 4 3 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 5 4 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 31 31 H 1.08992 * 109.47554 * 59.99639 * 5 4 3 32 32 H 1.08994 * 109.47445 * 304.99750 * 6 5 4 33 33 H 1.09000 * 109.47459 * 65.00057 * 6 5 4 34 34 H 0.97003 * 119.99345 * 345.00549 * 7 6 5 35 35 H 1.08996 * 109.47378 * 300.00003 * 11 8 7 36 36 H 1.09001 * 109.46899 * 60.00446 * 11 8 7 37 37 H 1.08996 * 109.47129 * 300.00227 * 12 11 8 38 38 H 1.09001 * 109.46885 * 60.00509 * 12 11 8 39 39 H 0.96999 * 120.00203 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.47097 * 180.02562 * 21 5 4 41 41 H 1.09001 * 109.47142 * 300.00176 * 21 5 4 42 42 H 1.09001 * 109.47375 * 59.99908 * 22 21 5 43 43 H 1.09000 * 109.47140 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0795 0.7213 -1.2502 6 6 5.6094 0.7207 -1.2504 7 7 6.0974 0.1370 -2.5025 8 16 7.6794 0.3382 -2.9486 9 8 7.7779 -0.3275 -4.2001 10 8 7.8975 1.7385 -2.8444 11 6 8.6239 -0.5493 -1.6794 12 6 10.1190 -0.4366 -1.9843 13 6 10.9036 -1.1745 -0.9302 14 1 10.3876 -1.6735 -0.1233 15 6 12.2804 -1.2116 -0.9954 16 7 12.9088 -0.6035 -1.9777 17 14 13.2530 -2.1255 0.3115 18 1 13.4428 -3.5370 -0.1093 19 1 14.5782 -1.4783 0.4854 20 1 12.5111 -2.0879 1.5975 21 6 3.5694 -0.7212 -1.2501 22 6 2.0395 -0.7212 -1.2496 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9334 2.4700 -0.0002 30 1 3.9337 0.9284 0.8891 31 1 3.7158 1.2352 -2.1399 32 1 5.9732 1.7442 -1.1606 33 1 5.9727 0.1308 -0.4089 34 1 5.4937 -0.3671 -3.0702 35 1 8.4182 -0.1132 -0.7020 36 1 8.3321 -1.5996 -1.6774 37 1 10.3244 -0.8731 -2.9617 38 1 10.4112 0.6135 -1.9866 39 1 13.8773 -0.6298 -2.0238 40 1 3.9328 -1.2351 -2.1401 41 1 3.9331 -1.2352 -0.3603 42 1 1.6758 -0.2072 -2.1393 43 1 1.6761 -1.7488 -1.2500 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111332477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:50 Heat of formation + Delta-G solvation = -145.322379 kcal Electronic energy + Delta-G solvation = -21373.514877 eV Core-core repulsion = 18156.812695 eV Total energy + Delta-G solvation = -3216.702182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -40.00812 -38.14119 -37.01300 -36.46420 -35.88564 -33.11831 -33.01709 -31.57306 -28.33177 -27.58262 -24.80886 -23.66998 -23.43432 -21.54231 -20.62399 -20.21949 -19.06996 -18.25559 -17.40397 -17.04414 -16.52993 -16.24477 -16.07087 -15.14840 -15.13725 -15.00264 -14.93436 -14.46997 -14.22495 -14.01684 -13.71392 -13.36034 -13.18606 -13.08370 -12.99178 -12.94914 -12.92522 -12.76753 -12.31057 -12.22681 -12.18674 -12.11195 -11.88970 -11.75859 -11.64942 -11.29051 -11.16820 -10.94105 -10.79210 -10.64424 -10.28538 -8.25741 -6.39785 -0.64750 1.41213 1.43109 1.54227 1.89648 2.38423 2.83213 3.07794 3.28968 3.71868 3.81455 3.84893 4.01121 4.14296 4.17638 4.26644 4.27130 4.55293 4.58665 4.63123 4.71104 4.72558 4.77971 4.78855 4.89911 4.93094 5.08956 5.13734 5.16809 5.26372 5.28588 5.29538 5.33583 5.34300 5.47217 5.47669 5.55809 5.68937 5.69481 6.06712 6.16383 6.74237 7.30476 8.86658 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023498 B = 0.003299 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.292698 B = 8485.847755 C = 9109.810561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.115 4.115 5 C -0.087 4.087 6 C 0.107 3.893 7 N -1.107 6.107 8 S 2.621 3.379 9 O -1.002 7.002 10 O -1.000 7.000 11 C -0.587 4.587 12 C 0.019 3.981 13 C -0.539 4.539 14 H 0.077 0.923 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.256 1.256 21 C -0.119 4.119 22 C -0.113 4.113 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.423 0.577 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.005 0.995 38 H 0.007 0.993 39 H 0.267 0.733 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.203 0.333 6.293 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.148 4.148 4 C -0.154 4.154 5 C -0.107 4.107 6 C -0.019 4.019 7 N -0.870 5.870 8 S 2.718 3.282 9 O -0.992 6.992 10 O -0.989 6.989 11 C -0.719 4.719 12 C -0.020 4.020 13 C -0.578 4.578 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.575 5.575 17 Si 0.798 3.202 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.180 1.180 21 C -0.157 4.157 22 C -0.150 4.150 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.260 0.740 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.024 0.976 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.650 0.984 5.560 25.288 hybrid contribution 0.744 -0.790 0.434 1.168 sum -23.906 0.194 5.993 24.647 Atomic orbital electron populations 1.21820 0.94969 1.01790 1.01816 1.21155 0.95637 0.96034 0.98335 1.21561 0.94699 0.96440 1.02113 1.21564 0.96099 1.00570 0.97136 1.21315 0.92011 0.97493 0.99854 1.21665 0.96573 0.98832 0.84841 1.55287 1.27581 1.70198 1.33894 1.04376 0.74173 0.74349 0.75310 1.93496 1.86273 1.77370 1.42068 1.93494 1.85556 1.32288 1.87604 1.30327 1.08700 1.15062 1.17841 1.18827 0.88659 0.97021 0.97465 1.21536 0.91894 1.33668 1.10670 0.90527 1.26135 0.99375 0.96436 0.98401 1.70105 1.09366 1.44471 1.33561 0.85301 0.77540 0.78314 0.79024 1.19649 1.20897 1.18029 1.21649 0.95947 0.95483 1.02576 1.21582 0.94878 1.00555 0.97993 0.92840 0.92591 0.92448 0.91265 0.91349 0.92181 0.91522 0.91023 0.90644 0.90937 0.89949 0.74028 0.83933 0.83886 0.97624 0.97502 0.92409 0.91713 0.91248 0.92158 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.19 71.98 0.66 -0.86 16 2 C -0.09 -1.08 2.72 -10.79 -0.03 -1.11 16 3 C -0.11 -1.33 5.20 30.59 0.16 -1.17 16 4 C -0.12 -1.56 5.20 30.59 0.16 -1.40 16 5 C -0.09 -1.35 2.30 -10.80 -0.02 -1.38 16 6 C 0.11 2.12 5.52 86.38 0.48 2.59 16 7 N -1.11 -26.43 5.76 -187.49 -1.08 -27.51 16 8 S 2.62 92.61 5.46 -56.49 -0.31 92.30 16 9 O -1.00 -41.98 18.08 -127.65 -2.31 -44.29 16 10 O -1.00 -41.92 17.50 -127.65 -2.23 -44.15 16 11 C -0.59 -21.82 6.01 71.98 0.43 -21.39 16 12 C 0.02 1.00 4.98 29.85 0.15 1.15 16 13 C -0.54 -29.81 9.11 25.60 0.23 -29.58 16 14 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 15 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 16 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 17 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 21 C -0.12 -1.66 5.07 30.59 0.16 -1.51 16 22 C -0.11 -1.40 5.20 30.60 0.16 -1.24 16 23 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.07 1.59 7.69 -2.39 -0.02 1.57 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.42 8.41 7.37 -96.74 -0.71 7.69 16 35 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 36 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.06 0.90 6.90 -2.39 -0.02 0.89 16 41 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -74.21 353.34 -0.38 -74.58 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.25 Total: 16.45 kcal Atomic # 6 Polarization: -58.71 SS G_CDS: 2.99 Total: -55.71 kcal Atomic # 7 Polarization: -83.61 SS G_CDS: -0.80 Total: -84.41 kcal Atomic # 8 Polarization: -83.91 SS G_CDS: -4.54 Total: -88.45 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 92.61 SS G_CDS: -0.31 Total: 92.30 kcal Total: -74.21 -0.38 -74.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111332477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.741 kcal (2) G-P(sol) polarization free energy of solvation -74.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds