Wall clock time and date at job start Tue Mar 31 2020 06:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47308 * 2 1 4 4 C 1.52997 * 109.47308 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46811 * 300.00286 * 4 3 2 6 6 C 1.52995 * 109.47452 * 299.99558 * 5 4 3 7 7 N 1.46502 * 109.46687 * 179.97438 * 5 4 3 8 8 S 1.65601 * 119.99809 * 157.97639 * 7 5 4 9 9 O 1.42108 * 104.27540 * 176.40879 * 8 7 5 10 10 O 1.42094 * 104.27875 * 304.26652 * 8 7 5 11 11 C 1.81398 * 104.44840 * 60.33848 * 8 7 5 12 12 C 1.52998 * 109.47128 * 171.40454 * 11 8 7 13 13 C 1.50699 * 109.47134 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00070 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00099 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00071 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00257 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46979 * 89.99786 * 17 15 13 19 19 H 1.48499 * 109.47223 * 209.99905 * 17 15 13 20 20 H 1.48498 * 109.46709 * 329.99742 * 17 15 13 21 21 C 1.52998 * 109.47339 * 60.00327 * 5 4 3 22 22 C 1.52993 * 109.47268 * 120.00352 * 2 1 3 23 23 H 1.09005 * 109.47306 * 299.99614 * 1 2 3 24 24 H 1.09006 * 109.47420 * 59.99635 * 1 2 3 25 25 H 1.09000 * 109.47465 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46826 * 240.00173 * 2 1 3 27 27 H 1.08996 * 109.47029 * 300.00384 * 3 2 1 28 28 H 1.09005 * 109.46622 * 59.99967 * 3 2 1 29 29 H 1.08993 * 109.47088 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.46897 * 60.00197 * 4 3 2 31 31 H 1.08997 * 109.47397 * 173.71269 * 6 5 4 32 32 H 1.08999 * 109.47482 * 293.71871 * 6 5 4 33 33 H 1.09000 * 109.46872 * 53.71362 * 6 5 4 34 34 H 0.97003 * 120.00082 * 337.97780 * 7 5 4 35 35 H 1.09004 * 109.47019 * 291.40538 * 11 8 7 36 36 H 1.08994 * 109.47395 * 51.40562 * 11 8 7 37 37 H 1.08995 * 109.47195 * 299.99675 * 12 11 8 38 38 H 1.09004 * 109.46935 * 59.99907 * 12 11 8 39 39 H 0.96998 * 120.00407 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.47352 * 179.97438 * 21 5 4 41 41 H 1.09004 * 109.47520 * 59.99364 * 21 5 4 42 42 H 1.09005 * 109.46985 * 300.00231 * 22 2 1 43 43 H 1.09006 * 109.47454 * 59.99669 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0794 0.7213 1.2502 6 6 3.5690 1.4427 2.4992 7 7 5.5444 0.7208 1.2505 8 16 6.3720 0.5219 2.6710 9 8 7.7377 0.4891 2.2793 10 8 5.8760 1.5533 3.5131 11 6 5.8448 -1.1042 3.2781 12 6 6.7017 -1.5016 4.4817 13 6 6.2632 -2.8522 4.9864 14 1 5.4540 -3.3746 4.4979 15 6 6.8944 -3.4204 6.0726 16 7 7.8795 -2.7840 6.6678 17 14 6.3515 -5.0949 6.6978 18 1 7.1261 -6.1565 6.0063 19 1 6.5928 -5.1792 8.1607 20 1 4.9038 -5.2800 6.4235 21 6 3.5695 -0.7212 1.2502 22 6 2.0400 -0.7213 1.2491 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.6767 1.9563 -0.8899 28 1 1.6766 1.9563 0.8901 29 1 3.9333 2.4701 0.0011 30 1 3.9336 0.9286 -0.8891 31 1 3.8371 0.8681 3.3857 32 1 4.0212 2.4327 2.5573 33 1 2.4848 1.5413 2.4442 34 1 6.0297 0.8370 0.4186 35 1 4.7975 -1.0583 3.5770 36 1 5.9647 -1.8439 2.4867 37 1 7.7489 -1.5475 4.1829 38 1 6.5817 -0.7618 5.2732 39 1 8.3239 -3.1839 7.4317 40 1 3.9327 -1.2350 2.1401 41 1 3.9331 -1.2351 0.3603 42 1 1.6766 -0.2075 2.1392 43 1 1.6766 -1.7490 1.2492 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111336104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:02 Heat of formation + Delta-G solvation = -103.315444 kcal Electronic energy + Delta-G solvation = -22612.370551 eV Core-core repulsion = 19397.489927 eV Total energy + Delta-G solvation = -3214.880625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -39.87724 -36.58566 -35.45219 -35.10204 -33.92403 -31.42434 -30.91097 -30.65385 -27.99275 -25.65471 -25.11066 -23.01110 -21.60455 -20.98948 -18.98522 -18.72096 -17.40916 -16.83047 -16.22408 -15.45357 -15.14336 -14.68744 -14.62802 -14.51054 -14.11245 -13.88764 -13.36902 -13.11820 -12.87270 -12.58817 -12.37938 -12.23403 -12.05454 -11.73454 -11.69520 -11.50390 -11.48370 -11.29320 -11.09059 -11.06964 -10.94765 -10.77166 -10.55687 -10.40412 -10.36993 -10.35444 -9.98264 -9.72884 -9.35522 -9.00305 -8.49484 -6.11610 -4.17090 0.86278 3.16689 3.26267 3.32572 3.35093 4.27127 4.39049 4.44948 4.53878 4.63025 4.80702 4.85856 4.98656 5.09688 5.19408 5.23627 5.28213 5.37812 5.40433 5.51625 5.58241 5.61019 5.68064 5.73254 5.77624 5.87481 5.91949 5.94449 5.99805 6.07643 6.09620 6.20201 6.29765 6.37696 6.52641 6.60787 7.19537 7.31068 7.38500 7.81317 8.18531 8.86315 9.47622 10.99460 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018054 B = 0.004962 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.524187 B = 5641.613203 C = 6796.882833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.115 4.115 4 C -0.113 4.113 5 C 0.180 3.820 6 C -0.178 4.178 7 N -1.120 6.120 8 S 2.592 3.408 9 O -0.971 6.971 10 O -0.966 6.966 11 C -0.594 4.594 12 C 0.029 3.971 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.153 4.153 22 C -0.114 4.114 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.411 0.589 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.035 0.965 38 H 0.031 0.969 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.370 6.667 -14.697 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.153 4.153 4 C -0.152 4.152 5 C 0.091 3.909 6 C -0.236 4.236 7 N -0.875 5.875 8 S 2.690 3.310 9 O -0.961 6.961 10 O -0.956 6.956 11 C -0.727 4.727 12 C -0.010 4.010 13 C -0.558 4.558 14 H 0.079 0.921 15 C -0.144 4.144 16 N -0.529 5.529 17 Si 0.726 3.274 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.192 4.192 22 C -0.152 4.152 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.244 0.756 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.713 7.315 -14.016 20.287 hybrid contribution -0.347 -1.524 -0.110 1.567 sum -13.059 5.791 -14.126 20.091 Atomic orbital electron populations 1.21832 0.95364 1.01670 1.01629 1.21174 0.95292 0.96069 0.98702 1.21662 0.94684 0.96613 1.02312 1.21730 0.95935 1.00770 0.96762 1.20101 0.78751 0.95027 0.96978 1.22651 1.01955 1.02768 0.96192 1.55888 1.14487 1.90675 1.26494 1.05527 0.73566 0.78445 0.73495 1.93543 1.32966 1.88213 1.81405 1.93570 1.80627 1.54063 1.67327 1.30686 1.11295 1.19381 1.11341 1.18956 0.94268 0.98715 0.89061 1.20996 1.18443 1.02305 1.14101 0.92066 1.25062 0.94904 0.98020 0.96459 1.69956 1.22694 1.38319 1.21893 0.86487 0.79011 0.83799 0.78088 1.20487 1.21022 1.19768 1.22445 0.96361 0.96355 1.04007 1.21609 0.94757 1.00734 0.98097 0.92628 0.92927 0.92732 0.91258 0.91843 0.91132 0.91184 0.91467 0.91212 0.90193 0.90909 0.75609 0.85904 0.86058 0.94666 0.95108 0.92549 0.89903 0.91079 0.91192 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.76 2.72 -90.62 -0.25 -1.01 16 3 C -0.11 -0.92 4.93 -26.73 -0.13 -1.06 16 4 C -0.11 -1.05 4.90 -26.73 -0.13 -1.18 16 5 C 0.18 2.10 0.90 -131.82 -0.12 1.98 16 6 C -0.18 -2.30 6.29 37.16 0.23 -2.06 16 7 N -1.12 -14.84 5.42 0.54 0.00 -14.84 16 8 S 2.59 46.99 5.01 -107.50 -0.54 46.45 16 9 O -0.97 -20.86 18.08 -57.54 -1.04 -21.90 16 10 O -0.97 -19.48 14.43 -57.54 -0.83 -20.31 16 11 C -0.59 -11.37 4.24 37.16 0.16 -11.21 16 12 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 13 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 17 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C -0.15 -1.70 4.77 -26.76 -0.13 -1.83 16 22 C -0.11 -1.09 4.93 -26.76 -0.13 -1.22 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.58 6.29 -51.93 -0.33 0.25 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 1.02 5.72 -51.93 -0.30 0.72 16 32 H 0.08 1.12 7.34 -51.93 -0.38 0.74 16 33 H 0.07 0.76 4.84 -51.93 -0.25 0.51 16 34 H 0.41 4.61 8.67 -34.47 -0.30 4.31 16 35 H 0.12 2.12 5.65 -51.92 -0.29 1.83 16 36 H 0.12 2.09 8.01 -51.93 -0.42 1.67 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 1.04 4.39 -51.93 -0.23 0.81 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.67 6.57 -51.93 -0.34 0.33 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -33.48 332.61 -9.41 -42.89 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.03 Total: 3.06 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: -0.71 Total: -30.74 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 0.74 Total: -40.61 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.87 Total: -42.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 46.99 SS G_CDS: -0.54 Total: 46.45 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.48 -9.41 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111336104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.426 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds