Wall clock time and date at job start Tue Mar 31 2020 07:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.52132 * 2 1 4 4 C 1.53034 * 109.50126 * 120.08213 * 2 1 3 5 5 C 1.53042 * 109.54013 * 181.31575 * 4 2 1 6 6 C 1.53197 * 109.31254 * 298.63565 * 5 4 2 7 7 N 1.46923 * 108.77250 * 54.63424 * 6 5 4 8 8 S 1.65603 * 120.63153 * 126.36875 * 7 6 5 9 9 O 1.42102 * 104.27650 * 333.92782 * 8 7 6 10 10 O 1.42098 * 104.27898 * 206.06841 * 8 7 6 11 11 C 1.81408 * 104.44779 * 89.99548 * 8 7 6 12 12 C 1.53000 * 109.46799 * 180.02562 * 11 8 7 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00362 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47052 * 89.99717 * 18 16 14 20 20 H 1.48495 * 109.47307 * 209.99656 * 18 16 14 21 21 H 1.48500 * 109.47143 * 330.00164 * 18 16 14 22 22 C 1.46927 * 118.74017 * 306.63984 * 7 6 5 23 23 H 1.09004 * 109.46927 * 299.91337 * 1 2 3 24 24 H 1.09001 * 109.47335 * 59.91862 * 1 2 3 25 25 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46825 * 180.08633 * 3 2 1 27 27 H 1.08997 * 109.47383 * 300.07928 * 3 2 1 28 28 H 1.09003 * 109.47504 * 60.08609 * 3 2 1 29 29 H 1.09007 * 109.45872 * 61.29951 * 4 2 1 30 30 H 1.08997 * 109.46267 * 301.33866 * 4 2 1 31 31 H 1.09001 * 109.49965 * 178.68923 * 5 4 2 32 32 H 1.08997 * 109.51986 * 58.60241 * 5 4 2 33 33 H 1.09006 * 109.58824 * 294.84817 * 6 5 4 34 34 H 1.08990 * 109.70313 * 174.48973 * 6 5 4 35 35 H 1.09001 * 109.46823 * 60.00309 * 11 8 7 36 36 H 1.08992 * 109.47429 * 300.00345 * 11 8 7 37 37 H 1.09002 * 109.47398 * 300.00340 * 12 11 8 38 38 H 1.09001 * 109.47194 * 60.00520 * 12 11 8 39 39 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 40 40 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 41 41 H 0.96994 * 119.99814 * 180.02562 * 17 16 14 42 42 H 1.09008 * 109.58553 * 173.14551 * 22 7 6 43 43 H 1.09004 * 109.58911 * 293.56893 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 3.5710 -0.6950 1.2659 6 6 4.1054 -1.4267 0.0305 7 7 3.5046 -0.8290 -1.1697 8 16 4.4587 -0.2839 -2.4087 9 8 5.6953 0.0340 -1.7850 10 8 3.6757 0.7212 -3.0378 11 6 4.6472 -1.7204 -3.5004 12 6 5.5202 -1.3397 -4.6978 13 6 5.6787 -2.5510 -5.6190 14 6 6.5392 -2.1764 -6.7981 15 1 6.9339 -1.1746 -6.8818 16 6 6.8234 -3.1127 -7.7694 17 7 7.5747 -2.7859 -8.7981 18 14 6.1424 -4.8461 -7.6234 19 1 4.8193 -4.9162 -8.2942 20 1 7.0769 -5.8012 -8.2711 21 1 5.9894 -5.1987 -6.1890 22 6 2.0415 -0.7187 -1.2472 23 1 -0.3633 0.5125 0.8908 24 1 -0.3634 0.5151 -0.8893 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1313 1.4410 -0.0015 27 1 1.6773 1.9566 -0.8892 28 1 1.6797 1.9558 0.8908 29 1 1.6969 -1.7573 1.2351 30 1 1.6583 -0.2246 2.1388 31 1 3.9336 -1.1898 2.1669 32 1 3.9164 0.3387 1.2542 33 1 3.8376 -2.4818 0.0865 34 1 5.1897 -1.3268 -0.0152 35 1 3.6664 -2.0403 -3.8525 36 1 5.1194 -2.5348 -2.9512 37 1 5.0483 -0.5251 -5.2473 38 1 6.5009 -1.0201 -4.3454 39 1 6.1504 -3.3659 -5.0698 40 1 4.6980 -2.8704 -5.9714 41 1 7.7743 -3.4445 -9.4816 42 1 1.7646 -0.1495 -2.1347 43 1 1.6021 -1.7149 -1.2977 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112706928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:29 Heat of formation + Delta-G solvation = -97.775941 kcal Electronic energy + Delta-G solvation = -22143.744028 eV Core-core repulsion = 18929.103615 eV Total energy + Delta-G solvation = -3214.640414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.60619 -37.02207 -35.78858 -34.80757 -34.32973 -32.21614 -32.09738 -28.37577 -27.49682 -27.04449 -24.86121 -23.51225 -22.29188 -20.44665 -19.26590 -18.45684 -17.65237 -16.90103 -16.21355 -16.01380 -15.15572 -15.06402 -14.73139 -14.46607 -14.20020 -14.18264 -13.79882 -13.30806 -12.90735 -12.51364 -12.36771 -12.34090 -12.14865 -12.08551 -11.97028 -11.88356 -11.84426 -11.56944 -11.51599 -11.28461 -11.00542 -10.97987 -10.94999 -10.58168 -10.47237 -10.09898 -9.87896 -9.70439 -9.28358 -8.96877 -8.59231 -6.08872 -4.08190 0.37168 2.69419 3.26133 3.33708 3.35863 3.95544 4.21770 4.30136 4.39898 4.53073 4.54811 4.76663 4.86510 5.01115 5.07597 5.10045 5.13564 5.24869 5.28410 5.40105 5.44891 5.51687 5.54284 5.55831 5.69378 5.74189 5.75329 5.79303 5.84396 5.94980 6.00093 6.12863 6.16387 6.25822 6.26400 6.48919 6.66504 7.12038 7.26066 7.70590 8.47270 8.95505 9.52230 11.04449 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.003691 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.441134 B = 7585.181126 C = 7720.534178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.105 4.105 5 C -0.134 4.134 6 C 0.117 3.883 7 N -1.002 6.002 8 S 2.598 3.402 9 O -0.958 6.958 10 O -0.956 6.956 11 C -0.616 4.616 12 C -0.098 4.098 13 C -0.004 4.004 14 C -0.527 4.527 15 H 0.075 0.925 16 C 0.068 3.932 17 N -0.900 5.900 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.266 1.266 22 C 0.126 3.874 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.264 0.736 42 H 0.095 0.905 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.116 2.242 22.130 26.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.201 4.201 4 C -0.143 4.143 5 C -0.173 4.173 6 C -0.008 4.008 7 N -0.839 5.839 8 S 2.695 3.305 9 O -0.948 6.948 10 O -0.946 6.946 11 C -0.747 4.747 12 C -0.137 4.137 13 C -0.043 4.043 14 C -0.565 4.565 15 H 0.093 0.907 16 C -0.134 4.134 17 N -0.539 5.539 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.191 1.191 22 C 0.001 3.999 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.681 3.053 21.897 26.000 hybrid contribution -0.453 -1.710 -0.210 1.782 sum -14.134 1.343 21.687 25.921 Atomic orbital electron populations 1.21824 0.93901 1.01898 1.02203 1.20767 0.95448 0.96234 0.95396 1.21920 1.01613 0.94779 1.01826 1.21541 0.95351 1.00344 0.97050 1.21912 0.96038 1.01868 0.97497 1.21435 0.98636 0.96707 0.84065 1.57821 1.16085 1.78429 1.31566 1.05416 0.73636 0.77038 0.74418 1.93560 1.44273 1.82874 1.74129 1.93560 1.69778 1.54486 1.76774 1.30661 1.10174 1.20014 1.13886 1.21313 0.97528 1.01932 0.92933 1.19528 0.97002 0.92969 0.94790 1.21138 1.30872 0.99822 1.04689 0.90729 1.25026 0.94656 0.98723 0.94999 1.69910 1.37734 1.35024 1.11220 0.86774 0.79068 0.84732 0.78679 1.20204 1.21239 1.19073 1.21444 0.78883 1.00504 0.99077 0.92377 0.92190 0.92502 0.92337 0.92093 0.92786 0.91830 0.91855 0.90935 0.90956 0.91542 0.88794 0.85515 0.85525 0.91044 0.91037 0.96196 0.96620 0.92613 0.88702 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.48 37.16 0.32 -0.65 16 2 C -0.08 -0.65 0.77 -154.61 -0.12 -0.77 16 3 C -0.14 -1.42 7.98 37.16 0.30 -1.12 16 4 C -0.11 -0.78 4.71 -26.69 -0.13 -0.90 16 5 C -0.13 -1.09 5.74 -26.61 -0.15 -1.25 16 6 C 0.12 1.09 6.43 -3.71 -0.02 1.06 16 7 N -1.00 -11.09 2.67 -113.76 -0.30 -11.39 16 8 S 2.60 37.96 5.45 -107.50 -0.59 37.38 16 9 O -0.96 -16.51 16.59 -57.54 -0.95 -17.47 16 10 O -0.96 -16.29 16.58 -57.54 -0.95 -17.25 16 11 C -0.62 -9.10 6.18 37.16 0.23 -8.87 16 12 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 13 C 0.00 -0.10 4.04 -27.89 -0.11 -0.21 16 14 C -0.53 -15.11 9.66 -34.44 -0.33 -15.44 16 15 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 18 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 22 C 0.13 1.22 5.07 -3.93 -0.02 1.20 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.67 6.34 -51.93 -0.33 0.34 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.94 6.86 -51.93 -0.36 0.58 16 35 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 36 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 40 H 0.02 0.36 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 42 H 0.09 0.99 6.85 -51.92 -0.36 0.64 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -34.22 344.24 -9.41 -43.63 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.62 Total: -2.72 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -0.28 Total: -27.15 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.47 Total: -38.42 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.91 Total: -34.71 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 37.96 SS G_CDS: -0.59 Total: 37.38 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.22 -9.41 -43.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112706928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.145 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds