Wall clock time and date at job start Tue Mar 31 2020 07:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.52132 * 2 1 4 4 C 1.53034 * 109.50126 * 120.08213 * 2 1 3 5 5 C 1.53042 * 109.54013 * 181.31575 * 4 2 1 6 6 C 1.53197 * 109.31254 * 298.63565 * 5 4 2 7 7 N 1.46923 * 108.77250 * 54.63424 * 6 5 4 8 8 S 1.65603 * 120.63153 * 126.36875 * 7 6 5 9 9 O 1.42102 * 104.27650 * 333.92782 * 8 7 6 10 10 O 1.42098 * 104.27898 * 206.06841 * 8 7 6 11 11 C 1.81408 * 104.44779 * 89.99548 * 8 7 6 12 12 C 1.53000 * 109.46799 * 180.02562 * 11 8 7 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 8 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00362 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99850 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47052 * 89.99717 * 18 16 14 20 20 H 1.48495 * 109.47307 * 209.99656 * 18 16 14 21 21 H 1.48500 * 109.47143 * 330.00164 * 18 16 14 22 22 C 1.46927 * 118.74017 * 306.63984 * 7 6 5 23 23 H 1.09004 * 109.46927 * 299.91337 * 1 2 3 24 24 H 1.09001 * 109.47335 * 59.91862 * 1 2 3 25 25 H 1.09001 * 109.46927 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46825 * 180.08633 * 3 2 1 27 27 H 1.08997 * 109.47383 * 300.07928 * 3 2 1 28 28 H 1.09003 * 109.47504 * 60.08609 * 3 2 1 29 29 H 1.09007 * 109.45872 * 61.29951 * 4 2 1 30 30 H 1.08997 * 109.46267 * 301.33866 * 4 2 1 31 31 H 1.09001 * 109.49965 * 178.68923 * 5 4 2 32 32 H 1.08997 * 109.51986 * 58.60241 * 5 4 2 33 33 H 1.09006 * 109.58824 * 294.84817 * 6 5 4 34 34 H 1.08990 * 109.70313 * 174.48973 * 6 5 4 35 35 H 1.09001 * 109.46823 * 60.00309 * 11 8 7 36 36 H 1.08992 * 109.47429 * 300.00345 * 11 8 7 37 37 H 1.09002 * 109.47398 * 300.00340 * 12 11 8 38 38 H 1.09001 * 109.47194 * 60.00520 * 12 11 8 39 39 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 40 40 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 41 41 H 0.96994 * 119.99814 * 180.02562 * 17 16 14 42 42 H 1.09008 * 109.58553 * 173.14551 * 22 7 6 43 43 H 1.09004 * 109.58911 * 293.56893 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 3.5710 -0.6950 1.2659 6 6 4.1054 -1.4267 0.0305 7 7 3.5046 -0.8290 -1.1697 8 16 4.4587 -0.2839 -2.4087 9 8 5.6953 0.0340 -1.7850 10 8 3.6757 0.7212 -3.0378 11 6 4.6472 -1.7204 -3.5004 12 6 5.5202 -1.3397 -4.6978 13 6 5.6787 -2.5510 -5.6190 14 6 6.5392 -2.1764 -6.7981 15 1 6.9339 -1.1746 -6.8818 16 6 6.8234 -3.1127 -7.7694 17 7 7.5747 -2.7859 -8.7981 18 14 6.1424 -4.8461 -7.6234 19 1 4.8193 -4.9162 -8.2942 20 1 7.0769 -5.8012 -8.2711 21 1 5.9894 -5.1987 -6.1890 22 6 2.0415 -0.7187 -1.2472 23 1 -0.3633 0.5125 0.8908 24 1 -0.3634 0.5151 -0.8893 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1313 1.4410 -0.0015 27 1 1.6773 1.9566 -0.8892 28 1 1.6797 1.9558 0.8908 29 1 1.6969 -1.7573 1.2351 30 1 1.6583 -0.2246 2.1388 31 1 3.9336 -1.1898 2.1669 32 1 3.9164 0.3387 1.2542 33 1 3.8376 -2.4818 0.0865 34 1 5.1897 -1.3268 -0.0152 35 1 3.6664 -2.0403 -3.8525 36 1 5.1194 -2.5348 -2.9512 37 1 5.0483 -0.5251 -5.2473 38 1 6.5009 -1.0201 -4.3454 39 1 6.1504 -3.3659 -5.0698 40 1 4.6980 -2.8704 -5.9714 41 1 7.7743 -3.4445 -9.4816 42 1 1.7646 -0.1495 -2.1347 43 1 1.6021 -1.7149 -1.2977 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112706928.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:28 Heat of formation + Delta-G solvation = -121.007550 kcal Electronic energy + Delta-G solvation = -22144.751427 eV Core-core repulsion = 18929.103615 eV Total energy + Delta-G solvation = -3215.647812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.29412 -38.27727 -37.05491 -36.52947 -35.07608 -34.26765 -32.77790 -30.17341 -28.18909 -27.68099 -25.76004 -25.16674 -22.98514 -22.18545 -20.21585 -19.33031 -18.93378 -18.68390 -17.30585 -17.30435 -16.25836 -16.19623 -15.75488 -15.63147 -15.31954 -15.14952 -14.87304 -14.49703 -14.07575 -13.98673 -13.68301 -13.45661 -13.25244 -13.20986 -13.07555 -12.89522 -12.72362 -12.71248 -12.62677 -12.57104 -12.33042 -11.92409 -11.86292 -11.67398 -11.66374 -11.44006 -11.35597 -11.18862 -11.07977 -10.79105 -9.82653 -8.31441 -6.37859 -0.78847 1.35827 1.38671 1.50374 1.68241 2.35299 2.80482 3.03497 3.12690 3.53794 3.72907 3.83800 3.90098 3.93401 4.12794 4.25765 4.30822 4.36318 4.49396 4.56424 4.64746 4.76503 4.81080 4.82564 4.88229 4.89878 4.92762 4.96078 5.02551 5.12950 5.16756 5.22497 5.29382 5.30375 5.39848 5.42649 5.53515 5.57792 5.60462 5.72357 6.23266 6.70184 7.26913 8.85658 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029830 B = 0.003691 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.441134 B = 7585.181126 C = 7720.534178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C -0.146 4.146 4 C -0.101 4.101 5 C -0.135 4.135 6 C 0.108 3.892 7 N -0.994 5.994 8 S 2.610 3.390 9 O -0.991 6.991 10 O -0.987 6.987 11 C -0.609 4.609 12 C -0.104 4.104 13 C -0.004 4.004 14 C -0.546 4.546 15 H 0.028 0.972 16 C 0.001 3.999 17 N -0.952 5.952 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.284 1.284 21 H -0.239 1.239 22 C 0.117 3.883 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.038 0.962 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.268 0.732 42 H 0.081 0.919 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.553 -0.573 24.552 29.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 C -0.204 4.204 4 C -0.138 4.138 5 C -0.174 4.174 6 C -0.016 4.016 7 N -0.832 5.832 8 S 2.708 3.292 9 O -0.981 6.981 10 O -0.977 6.977 11 C -0.740 4.740 12 C -0.143 4.143 13 C -0.043 4.043 14 C -0.584 4.584 15 H 0.047 0.953 16 C -0.196 4.196 17 N -0.593 5.593 18 Si 0.779 3.221 19 H -0.188 1.188 20 H -0.210 1.210 21 H -0.162 1.162 22 C -0.008 4.008 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.121 0.261 24.335 29.191 hybrid contribution 0.339 -0.713 -0.950 1.235 sum -15.781 -0.452 23.385 28.215 Atomic orbital electron populations 1.21796 0.92407 1.02904 1.02346 1.20811 0.96578 0.94951 0.95570 1.21944 1.00322 0.96372 1.01735 1.21534 0.94465 1.01226 0.96598 1.21941 0.96857 1.00880 0.97749 1.21713 0.98107 0.98353 0.83469 1.57507 1.16473 1.78412 1.30846 1.04736 0.73032 0.76798 0.74610 1.93515 1.46179 1.83558 1.74827 1.93518 1.70280 1.56107 1.77807 1.30567 1.10692 1.20834 1.11910 1.21183 0.98311 1.00357 0.94472 1.19497 0.96532 0.94702 0.93525 1.21554 1.31651 0.98161 1.07061 0.95322 1.26131 0.94890 1.04274 0.94296 1.70084 1.39636 1.37043 1.12490 0.85573 0.78511 0.77776 0.80283 1.18841 1.20999 1.16182 1.21714 0.77725 1.02116 0.99220 0.91595 0.92791 0.91019 0.94334 0.93610 0.91478 0.90114 0.90896 0.88873 0.92852 0.88569 0.89943 0.82870 0.82920 0.92070 0.92113 0.94928 0.95038 0.92367 0.90051 0.88622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.48 71.98 0.61 -0.88 16 2 C -0.08 -1.13 0.77 -52.25 -0.04 -1.17 16 3 C -0.15 -2.80 7.98 71.98 0.57 -2.23 16 4 C -0.10 -1.14 4.71 30.62 0.14 -1.00 16 5 C -0.14 -1.87 5.74 30.67 0.18 -1.69 16 6 C 0.11 1.73 6.43 86.36 0.56 2.29 16 7 N -0.99 -20.06 2.67 -513.82 -1.37 -21.43 16 8 S 2.61 75.09 5.45 -56.49 -0.31 74.78 16 9 O -0.99 -34.57 16.59 -127.65 -2.12 -36.69 16 10 O -0.99 -34.19 16.58 -127.65 -2.12 -36.31 16 11 C -0.61 -16.67 6.18 71.98 0.44 -16.22 16 12 C -0.10 -4.10 5.16 30.59 0.16 -3.94 16 13 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 14 C -0.55 -32.09 9.66 25.60 0.25 -31.84 16 15 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 16 C 0.00 0.05 5.47 84.65 0.46 0.51 16 17 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 18 Si 0.96 43.34 27.47 68.60 1.88 45.22 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 22 C 0.12 1.97 5.07 86.22 0.44 2.41 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.04 0.88 5.97 -2.38 -0.01 0.86 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.94 6.34 -2.39 -0.02 0.93 16 33 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.08 1.53 6.86 -2.39 -0.02 1.51 16 35 H 0.15 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.15 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.03 1.41 7.20 -2.39 -0.02 1.40 16 40 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 41 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 42 H 0.08 1.61 6.85 -2.38 -0.02 1.59 16 43 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -77.02 344.24 1.06 -75.95 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.90 Total: 12.50 kcal Atomic # 6 Polarization: -57.72 SS G_CDS: 3.89 Total: -53.83 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -1.07 Total: -81.62 kcal Atomic # 8 Polarization: -68.77 SS G_CDS: -4.23 Total: -73.00 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Atomic # 16 Polarization: 75.09 SS G_CDS: -0.31 Total: 74.78 kcal Total: -77.02 1.06 -75.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112706928.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.054 kcal (2) G-P(sol) polarization free energy of solvation -77.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds