Wall clock time and date at job start Tue Mar 31 2020 07:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 115.54747 * 2 1 4 4 C 1.52998 * 117.49948 * 145.66383 * 2 1 3 5 5 C 1.53000 * 117.50265 * 214.32623 * 2 1 3 6 6 H 1.09001 * 117.49775 * 0.02562 * 5 2 1 7 7 C 1.50707 * 117.49605 * 145.01910 * 5 2 1 8 8 O 1.21274 * 120.00379 * 0.02562 * 7 5 2 9 9 N 1.34775 * 119.99660 * 180.02562 * 7 5 2 10 10 C 1.46494 * 120.00187 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47461 * 180.02562 * 10 9 7 12 12 C 1.38325 * 119.96068 * 269.72068 * 11 10 9 13 13 C 1.38282 * 120.13349 * 179.76754 * 12 11 10 14 14 C 1.38125 * 120.07051 * 0.50535 * 13 12 11 15 15 C 1.38855 * 119.92525 * 359.75482 * 14 13 12 16 16 O 1.35755 * 120.06534 * 180.02562 * 15 14 13 17 17 C 1.34829 * 116.99945 * 354.43276 * 16 15 14 18 18 H 1.08004 * 120.00284 * 5.06266 * 17 16 15 19 19 C 1.38656 * 120.00397 * 185.05970 * 17 16 15 20 20 N 1.31556 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47424 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46857 * 120.00041 * 21 19 17 24 24 H 1.48503 * 109.46885 * 239.99612 * 21 19 17 25 25 C 1.38071 * 119.96620 * 90.00006 * 11 10 9 26 26 H 1.09005 * 109.46647 * 85.58684 * 1 2 3 27 27 H 1.08993 * 109.46989 * 205.57888 * 1 2 3 28 28 H 1.09003 * 109.47575 * 325.58583 * 1 2 3 29 29 H 1.09001 * 109.47348 * 34.41508 * 3 2 1 30 30 H 1.09006 * 109.47286 * 154.41194 * 3 2 1 31 31 H 1.09003 * 109.47371 * 274.41055 * 3 2 1 32 32 H 1.08996 * 117.50130 * 214.98290 * 4 2 1 33 33 H 1.08998 * 117.49968 * 359.97438 * 4 2 1 34 34 H 0.97008 * 120.00213 * 0.02562 * 9 7 5 35 35 H 1.09005 * 109.46618 * 300.00387 * 10 9 7 36 36 H 1.08997 * 109.47208 * 59.99409 * 10 9 7 37 37 H 1.07994 * 119.93478 * 0.02562 * 12 11 10 38 38 H 1.08005 * 119.96612 * 180.23796 * 13 12 11 39 39 H 1.07997 * 120.03536 * 179.76429 * 14 13 12 40 40 H 0.96992 * 120.00679 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03814 * 359.94923 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2364 -1.1206 0.7655 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8579 -1.2691 7 6 3.5294 -0.7805 -1.4610 8 8 3.9720 0.3469 -1.4007 9 7 4.1936 -1.7293 -2.1502 10 6 5.4506 -1.3989 -2.8260 11 6 5.9861 -2.6254 -3.5188 12 6 6.8452 -3.4776 -2.8488 13 6 7.3349 -4.6066 -3.4794 14 6 6.9755 -4.8811 -4.7845 15 6 6.1175 -4.0246 -5.4615 16 8 5.7620 -4.2920 -6.7442 17 6 6.3656 -5.3396 -7.3409 18 1 7.0337 -5.9720 -6.7752 19 6 6.1285 -5.6051 -8.6810 20 7 5.3143 -4.8352 -9.3701 21 14 6.9642 -7.0570 -9.5076 22 1 7.8241 -7.7600 -8.5221 23 1 5.9335 -7.9936 -10.0230 24 1 7.7996 -6.5710 -10.6351 25 6 5.6232 -2.8942 -4.8236 26 1 -0.3633 0.0791 -1.0247 27 1 -0.3633 -0.9269 0.4437 28 1 -0.3634 0.8478 0.5808 29 1 1.5816 2.0739 0.5808 30 1 3.1828 1.3085 0.4439 31 1 2.2752 1.7423 -1.0246 32 1 3.1715 -0.8746 1.2687 33 1 1.6112 -1.8576 1.2694 34 1 3.8394 -2.6311 -2.1987 35 1 5.2721 -0.6149 -3.5621 36 1 6.1768 -1.0494 -2.0921 37 1 7.1309 -3.2630 -1.8296 38 1 8.0025 -5.2722 -2.9524 39 1 7.3613 -5.7610 -5.2778 40 1 5.1481 -5.0210 -10.3074 41 1 4.9553 -2.2265 -5.3475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123613399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:25 Heat of formation + Delta-G solvation = -23.809922 kcal Electronic energy + Delta-G solvation = -21812.909972 eV Core-core repulsion = 18466.033014 eV Total energy + Delta-G solvation = -3346.876958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.27250 -39.15758 -37.53974 -36.63326 -34.45971 -32.35565 -30.99615 -29.60800 -29.08428 -27.57768 -26.30372 -25.26982 -23.52524 -21.73188 -20.85015 -20.47812 -19.27357 -17.82025 -17.23250 -16.86489 -15.68017 -15.42315 -15.11990 -14.76759 -14.48581 -14.33290 -14.14577 -13.79671 -13.62905 -13.45169 -13.24221 -12.71437 -12.66648 -12.42096 -12.23348 -12.10781 -11.93120 -11.69204 -11.42962 -11.35841 -10.96304 -10.83635 -10.71535 -10.47861 -10.37310 -10.02800 -9.53691 -9.42134 -8.95541 -8.91145 -8.25629 -7.34966 -6.51009 -4.10578 1.88391 2.24759 2.51943 3.07674 3.09979 3.15490 3.31224 3.62280 3.90910 4.43883 4.46163 4.57442 4.65393 4.90221 4.91162 5.03759 5.06962 5.25467 5.38786 5.46816 5.49231 5.52956 5.71943 5.73686 5.75103 5.82772 5.84668 5.89699 5.92259 6.04563 6.06080 6.23301 6.37786 6.53125 6.54754 6.79636 6.97766 7.16819 7.25307 7.33695 7.60202 7.69897 7.93207 8.30205 8.94428 9.62982 10.66842 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.002808 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.344281 B = 9970.762581 C =10463.992299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.102 4.102 4 C -0.147 4.147 5 C -0.188 4.188 6 H 0.122 0.878 7 C 0.540 3.460 8 O -0.541 6.541 9 N -0.717 5.717 10 C 0.168 3.832 11 C -0.073 4.073 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.151 3.849 16 O -0.177 6.177 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.942 3.058 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.171 4.171 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.128 0.872 40 H 0.270 0.730 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 4.517 17.022 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.185 4.185 5 C -0.209 4.209 6 H 0.140 0.860 7 C 0.327 3.673 8 O -0.419 6.419 9 N -0.368 5.368 10 C 0.046 3.954 11 C -0.074 4.074 12 C -0.215 4.215 13 C -0.094 4.094 14 C -0.246 4.246 15 C 0.097 3.903 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.191 4.191 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.238 0.762 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.296 5.458 16.639 18.294 hybrid contribution 0.378 -1.481 -0.623 1.651 sum -4.917 3.977 16.015 17.219 Atomic orbital electron populations 1.21401 0.91588 1.02122 1.02276 1.21580 0.94638 0.91906 1.01443 1.21349 0.99537 0.92394 1.02652 1.23212 1.02930 1.01412 0.90928 1.22396 0.97904 1.04965 0.95680 0.85975 1.19657 0.84529 0.84729 0.78406 1.90686 1.68705 1.20755 1.61751 1.46111 1.24415 1.13652 1.52619 1.20142 0.84760 0.94944 0.95590 1.19268 0.98590 0.95850 0.93647 1.20476 1.03786 0.97504 0.99692 1.20749 0.98142 0.96288 0.94246 1.21246 1.04668 1.02802 0.95834 1.19321 0.92158 0.92566 0.86277 1.83983 1.57337 1.46808 1.19858 1.21375 1.26955 1.04916 0.93676 0.88979 1.25303 0.96901 0.98963 0.95324 1.70041 1.33242 1.37076 1.09178 0.85639 0.78814 0.79599 0.79328 1.19088 1.20101 1.20087 1.20085 1.06064 0.98196 0.94747 0.91908 0.92311 0.91699 0.93435 0.91708 0.91346 0.88327 0.87941 0.76234 0.90902 0.91031 0.87533 0.87278 0.85442 0.91981 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.85 37.16 0.37 -0.53 16 2 C -0.10 -0.93 2.70 -154.51 -0.42 -1.34 16 3 C -0.10 -1.12 8.09 37.16 0.30 -0.82 16 4 C -0.15 -1.31 9.53 -26.69 -0.25 -1.56 16 5 C -0.19 -1.97 5.91 -91.73 -0.54 -2.51 16 6 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 7 C 0.54 7.30 7.59 -10.98 -0.08 7.21 16 8 O -0.54 -8.81 13.10 5.56 0.07 -8.74 16 9 N -0.72 -9.46 5.55 -61.47 -0.34 -9.80 16 10 C 0.17 2.48 5.80 -5.20 -0.03 2.45 16 11 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 12 C -0.20 -3.18 9.70 -39.53 -0.38 -3.57 16 13 C -0.08 -1.32 10.04 -39.61 -0.40 -1.72 16 14 C -0.23 -4.71 9.17 -39.39 -0.36 -5.07 16 15 C 0.15 3.51 6.65 -39.11 -0.26 3.25 16 16 O -0.18 -4.92 9.76 0.03 0.00 -4.91 16 17 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 18 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 21 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 16 22 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 C -0.17 -3.46 9.64 -39.40 -0.38 -3.84 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 28 H 0.06 0.44 7.93 -51.93 -0.41 0.03 16 29 H 0.05 0.43 7.93 -51.93 -0.41 0.02 16 30 H 0.06 0.79 7.01 -51.93 -0.36 0.43 16 31 H 0.07 0.87 7.27 -51.93 -0.38 0.50 16 32 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 33 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 34 H 0.40 4.79 8.46 -40.82 -0.35 4.44 16 35 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 39 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 346.21 15.07 5.22 5.22 Total: -1.00 -30.78 346.21 -7.92 -38.70 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.81 Total: 7.84 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -2.79 Total: -19.29 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.42 Total: -33.92 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.07 Total: -13.65 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.78 -7.92 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123613399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.890 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds