Wall clock time and date at job start Tue Mar 31 2020 07:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 115.54747 * 2 1 4 4 C 1.52998 * 117.49948 * 145.66383 * 2 1 3 5 5 C 1.53000 * 117.50265 * 214.32623 * 2 1 3 6 6 H 1.09001 * 117.49775 * 0.02562 * 5 2 1 7 7 C 1.50707 * 117.49605 * 145.01910 * 5 2 1 8 8 O 1.21274 * 120.00379 * 0.02562 * 7 5 2 9 9 N 1.34775 * 119.99660 * 180.02562 * 7 5 2 10 10 C 1.46494 * 120.00187 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47461 * 180.02562 * 10 9 7 12 12 C 1.38325 * 119.96068 * 269.72068 * 11 10 9 13 13 C 1.38282 * 120.13349 * 179.76754 * 12 11 10 14 14 C 1.38125 * 120.07051 * 0.50535 * 13 12 11 15 15 C 1.38855 * 119.92525 * 359.75482 * 14 13 12 16 16 O 1.35755 * 120.06534 * 180.02562 * 15 14 13 17 17 C 1.34829 * 116.99945 * 354.43276 * 16 15 14 18 18 H 1.08004 * 120.00284 * 5.06266 * 17 16 15 19 19 C 1.38656 * 120.00397 * 185.05970 * 17 16 15 20 20 N 1.31556 * 119.99863 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00126 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47424 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46857 * 120.00041 * 21 19 17 24 24 H 1.48503 * 109.46885 * 239.99612 * 21 19 17 25 25 C 1.38071 * 119.96620 * 90.00006 * 11 10 9 26 26 H 1.09005 * 109.46647 * 85.58684 * 1 2 3 27 27 H 1.08993 * 109.46989 * 205.57888 * 1 2 3 28 28 H 1.09003 * 109.47575 * 325.58583 * 1 2 3 29 29 H 1.09001 * 109.47348 * 34.41508 * 3 2 1 30 30 H 1.09006 * 109.47286 * 154.41194 * 3 2 1 31 31 H 1.09003 * 109.47371 * 274.41055 * 3 2 1 32 32 H 1.08996 * 117.50130 * 214.98290 * 4 2 1 33 33 H 1.08998 * 117.49968 * 359.97438 * 4 2 1 34 34 H 0.97008 * 120.00213 * 0.02562 * 9 7 5 35 35 H 1.09005 * 109.46618 * 300.00387 * 10 9 7 36 36 H 1.08997 * 109.47208 * 59.99409 * 10 9 7 37 37 H 1.07994 * 119.93478 * 0.02562 * 12 11 10 38 38 H 1.08005 * 119.96612 * 180.23796 * 13 12 11 39 39 H 1.07997 * 120.03536 * 179.76429 * 14 13 12 40 40 H 0.96992 * 120.00679 * 180.02562 * 20 19 17 41 41 H 1.07996 * 120.03814 * 359.94923 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1898 1.3804 0.0000 4 6 2.2364 -1.1206 0.7655 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8579 -1.2691 7 6 3.5294 -0.7805 -1.4610 8 8 3.9720 0.3469 -1.4007 9 7 4.1936 -1.7293 -2.1502 10 6 5.4506 -1.3989 -2.8260 11 6 5.9861 -2.6254 -3.5188 12 6 6.8452 -3.4776 -2.8488 13 6 7.3349 -4.6066 -3.4794 14 6 6.9755 -4.8811 -4.7845 15 6 6.1175 -4.0246 -5.4615 16 8 5.7620 -4.2920 -6.7442 17 6 6.3656 -5.3396 -7.3409 18 1 7.0337 -5.9720 -6.7752 19 6 6.1285 -5.6051 -8.6810 20 7 5.3143 -4.8352 -9.3701 21 14 6.9642 -7.0570 -9.5076 22 1 7.8241 -7.7600 -8.5221 23 1 5.9335 -7.9936 -10.0230 24 1 7.7996 -6.5710 -10.6351 25 6 5.6232 -2.8942 -4.8236 26 1 -0.3633 0.0791 -1.0247 27 1 -0.3633 -0.9269 0.4437 28 1 -0.3634 0.8478 0.5808 29 1 1.5816 2.0739 0.5808 30 1 3.1828 1.3085 0.4439 31 1 2.2752 1.7423 -1.0246 32 1 3.1715 -0.8746 1.2687 33 1 1.6112 -1.8576 1.2694 34 1 3.8394 -2.6311 -2.1987 35 1 5.2721 -0.6149 -3.5621 36 1 6.1768 -1.0494 -2.0921 37 1 7.1309 -3.2630 -1.8296 38 1 8.0025 -5.2722 -2.9524 39 1 7.3613 -5.7610 -5.2778 40 1 5.1481 -5.0210 -10.3074 41 1 4.9553 -2.2265 -5.3475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123613399.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:25 Heat of formation + Delta-G solvation = -42.552477 kcal Electronic energy + Delta-G solvation = -21813.722710 eV Core-core repulsion = 18466.033014 eV Total energy + Delta-G solvation = -3347.689696 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.32345 -40.76217 -38.77544 -37.98630 -35.72433 -34.29790 -32.36901 -30.87998 -30.26364 -28.32193 -27.72937 -27.04042 -24.53689 -23.27596 -22.42236 -21.45940 -20.20368 -19.49423 -18.83915 -18.03325 -16.92245 -16.76449 -16.58931 -16.11049 -16.01176 -15.58043 -15.52493 -14.99843 -14.88608 -14.51195 -14.36899 -14.09579 -13.94764 -13.68846 -13.45589 -13.33650 -13.05316 -12.86926 -12.68034 -12.56521 -12.37852 -12.29470 -12.10665 -12.09097 -11.22752 -11.15148 -10.91425 -10.82829 -10.50370 -10.10431 -9.75859 -9.05111 -8.48167 -6.16866 0.36635 0.68607 1.35365 1.43202 1.50986 1.53538 2.16412 2.22374 2.79423 2.85397 3.14193 3.38408 3.66169 3.73558 3.83303 3.88165 4.06981 4.19103 4.21819 4.28723 4.39738 4.50980 4.63243 4.70036 4.73003 4.83329 4.85975 4.99491 5.01131 5.08981 5.10583 5.11099 5.12641 5.23618 5.30296 5.39938 5.56187 5.60688 5.68788 5.69932 6.00563 6.14694 6.55260 6.96684 7.24157 7.76712 8.75204 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026830 B = 0.002808 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.344281 B = 9970.762581 C =10463.992299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.099 4.099 4 C -0.129 4.129 5 C -0.199 4.199 6 H 0.139 0.861 7 C 0.536 3.464 8 O -0.573 6.573 9 N -0.713 5.713 10 C 0.175 3.825 11 C -0.059 4.059 12 C -0.169 4.169 13 C -0.069 4.069 14 C -0.235 4.235 15 C 0.113 3.887 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.104 0.896 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.249 1.249 23 H -0.269 1.269 24 H -0.270 1.270 25 C -0.182 4.182 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.411 0.589 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.121 0.879 40 H 0.272 0.728 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 3.339 20.300 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.156 4.156 4 C -0.166 4.166 5 C -0.220 4.220 6 H 0.157 0.843 7 C 0.325 3.675 8 O -0.453 6.453 9 N -0.364 5.364 10 C 0.051 3.949 11 C -0.059 4.059 12 C -0.188 4.188 13 C -0.086 4.086 14 C -0.254 4.254 15 C 0.063 3.937 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.173 1.173 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.202 4.202 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.148 0.852 34 H 0.247 0.753 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.165 0.835 38 H 0.167 0.833 39 H 0.139 0.861 40 H 0.081 0.919 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.812 4.276 19.983 20.994 hybrid contribution 0.266 -0.929 -1.299 1.619 sum -4.546 3.348 18.684 19.518 Atomic orbital electron populations 1.21408 0.89786 1.03451 1.02400 1.21710 0.95929 0.91075 1.01625 1.21266 0.99225 0.93951 1.01168 1.23309 1.02804 1.01051 0.89482 1.22436 0.96590 1.06167 0.96805 0.84283 1.20221 0.85255 0.84099 0.77955 1.90681 1.69716 1.22044 1.62897 1.46032 1.23904 1.14161 1.52321 1.20006 0.85857 0.93418 0.95571 1.19445 0.97894 0.96404 0.92169 1.20989 1.01000 0.95751 1.01012 1.21170 0.97788 0.96998 0.92688 1.21381 1.04360 1.02274 0.97385 1.19843 0.93975 0.94345 0.85544 1.83950 1.59692 1.48099 1.22192 1.21871 1.27267 1.05273 0.94407 0.87865 1.26596 0.97558 1.02184 0.95756 1.70188 1.36097 1.39983 1.09671 0.84524 0.77852 0.75607 0.78201 1.17263 1.19374 1.19555 1.20210 1.06315 0.97531 0.96177 0.92343 0.90640 0.90813 0.91662 0.93378 0.93824 0.88958 0.85219 0.75305 0.92190 0.89646 0.83460 0.83256 0.86096 0.91862 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.85 71.98 0.71 -0.73 16 2 C -0.10 -1.80 2.70 -52.18 -0.14 -1.94 16 3 C -0.10 -2.11 8.09 71.98 0.58 -1.53 16 4 C -0.13 -1.91 9.53 30.62 0.29 -1.62 16 5 C -0.20 -3.75 5.91 -11.51 -0.07 -3.82 16 6 H 0.14 2.13 8.14 -2.39 -0.02 2.12 16 7 C 0.54 13.86 7.59 87.66 0.67 14.52 16 8 O -0.57 -18.53 13.10 -3.01 -0.04 -18.57 16 9 N -0.71 -17.63 5.55 -466.80 -2.59 -20.22 16 10 C 0.17 4.88 5.80 85.63 0.50 5.37 16 11 C -0.06 -1.87 5.25 -19.88 -0.10 -1.98 16 12 C -0.17 -4.80 9.70 22.30 0.22 -4.59 16 13 C -0.07 -2.14 10.04 22.25 0.22 -1.92 16 14 C -0.23 -9.65 9.17 22.39 0.21 -9.45 16 15 C 0.11 5.45 6.65 22.58 0.15 5.60 16 16 O -0.23 -13.77 9.76 -22.79 -0.22 -13.99 16 17 C -0.41 -23.55 9.49 67.92 0.64 -22.90 16 18 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 19 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 20 N -0.92 -56.21 13.67 21.61 0.30 -55.92 16 21 Si 1.02 42.20 29.55 68.60 2.03 44.22 16 22 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 25 C -0.18 -7.54 9.64 22.39 0.22 -7.32 16 26 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.07 0.71 7.90 -2.39 -0.02 0.70 16 28 H 0.07 0.81 7.93 -2.39 -0.02 0.79 16 29 H 0.06 1.11 7.93 -2.39 -0.02 1.09 16 30 H 0.05 1.16 7.01 -2.38 -0.02 1.15 16 31 H 0.04 1.13 7.27 -2.39 -0.02 1.11 16 32 H 0.09 1.51 8.05 -2.39 -0.02 1.49 16 33 H 0.13 1.24 8.05 -2.39 -0.02 1.22 16 34 H 0.41 8.91 8.46 -92.70 -0.78 8.13 16 35 H 0.06 1.85 8.08 -2.38 -0.02 1.83 16 36 H 0.09 2.20 8.08 -2.39 -0.02 2.18 16 37 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.12 5.07 5.64 -2.91 -0.02 5.05 16 40 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -72.17 346.21 4.28 -67.88 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.26 Total: 29.72 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 4.55 Total: -33.14 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -2.29 Total: -76.14 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.26 Total: -32.56 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -72.17 4.28 -67.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123613399.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.331 kcal (2) G-P(sol) polarization free energy of solvation -72.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds