Wall clock time and date at job start Tue Mar 31 2020 06:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47310 * 2 1 4 4 C 1.53002 * 109.46925 * 119.99621 * 2 1 3 5 5 C 1.52997 * 109.47415 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47164 * 300.00027 * 5 4 2 7 7 C 1.52999 * 109.46626 * 59.99702 * 6 5 4 8 8 C 1.52996 * 109.47577 * 239.99595 * 2 1 3 9 9 H 1.09000 * 109.47054 * 300.00355 * 8 2 1 10 10 N 1.46500 * 109.46993 * 60.00300 * 8 2 1 11 11 S 1.65600 * 120.00050 * 215.00257 * 10 8 2 12 12 O 1.42105 * 104.27693 * 181.07034 * 11 10 8 13 13 O 1.42098 * 104.27525 * 308.92492 * 11 10 8 14 14 C 1.81397 * 104.45210 * 64.99937 * 11 10 8 15 15 C 1.52993 * 109.47176 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47265 * 180.02562 * 15 14 11 17 17 H 1.08008 * 119.99639 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00260 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99839 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99928 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47130 * 59.99630 * 20 18 16 22 22 H 1.48505 * 109.46929 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47137 * 299.99521 * 20 18 16 24 24 H 1.08992 * 109.47458 * 300.00366 * 1 2 3 25 25 H 1.09001 * 109.46885 * 60.00386 * 1 2 3 26 26 H 1.08999 * 109.47330 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47502 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47533 * 299.99827 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99456 * 3 2 1 30 30 H 1.09000 * 109.46986 * 60.00086 * 4 2 1 31 31 H 1.09001 * 109.47601 * 300.00809 * 4 2 1 32 32 H 1.09001 * 109.46922 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.47140 * 59.99976 * 5 4 2 34 34 H 1.08993 * 109.46955 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47050 * 300.00004 * 6 5 4 36 36 H 1.09000 * 109.47160 * 60.00369 * 7 6 5 37 37 H 1.09002 * 109.46719 * 180.02562 * 7 6 5 38 38 H 0.97004 * 120.00194 * 35.00107 * 10 8 2 39 39 H 1.09005 * 109.46556 * 300.00038 * 14 11 10 40 40 H 1.08994 * 109.47342 * 59.99761 * 14 11 10 41 41 H 1.09005 * 109.47142 * 299.99352 * 15 14 11 42 42 H 1.08999 * 109.47220 * 59.99876 * 15 14 11 43 43 H 0.97006 * 119.99953 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2498 6 6 4.0805 -1.4417 0.0005 7 6 3.5705 -0.7205 -1.2487 8 6 2.0401 -0.7213 -1.2491 9 1 1.6767 -1.7490 -1.2491 10 7 1.5518 -0.0307 -2.4454 11 16 1.1580 -0.8986 -3.7997 12 8 0.7580 0.0862 -4.7429 13 8 2.2951 -1.7180 -4.0337 14 6 -0.2611 -1.9086 -3.2934 15 6 -0.7231 -2.7666 -4.4728 16 6 -1.9025 -3.6053 -4.0524 17 1 -2.2841 -3.5337 -3.0445 18 6 -2.4938 -4.4647 -4.9539 19 7 -2.0288 -4.5521 -6.1810 20 14 -3.9553 -5.5047 -4.4325 21 1 -5.0654 -4.6176 -4.0013 22 1 -4.4038 -6.3375 -5.5774 23 1 -3.5588 -6.3854 -3.3045 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8899 30 1 1.6766 -1.7488 1.2493 31 1 1.6765 -0.2074 2.1393 32 1 3.9331 -1.2349 2.1396 33 1 3.9329 0.3071 1.2499 34 1 5.1704 -1.4417 0.0011 35 1 3.7175 -2.4695 0.0004 36 1 3.9335 0.3073 -1.2485 37 1 3.9339 -1.2344 -2.1386 38 1 1.4592 0.9349 -2.4441 39 1 0.0302 -2.5556 -2.4659 40 1 -1.0757 -1.2576 -2.9761 41 1 -1.0144 -2.1199 -5.3005 42 1 0.0916 -3.4177 -4.7896 43 1 -2.4450 -5.1565 -6.8154 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127677457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:12 Heat of formation + Delta-G solvation = -110.540232 kcal Electronic energy + Delta-G solvation = -22578.223488 eV Core-core repulsion = 19363.029573 eV Total energy + Delta-G solvation = -3215.193915 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.01015 -36.52336 -35.39507 -34.25648 -33.88532 -33.16025 -31.15452 -29.19845 -27.51301 -26.18580 -25.57820 -22.55899 -21.66736 -21.18451 -18.97512 -18.69650 -17.39220 -16.62374 -16.20225 -15.37435 -15.16177 -14.82716 -14.64989 -14.53034 -14.36151 -13.72218 -13.36962 -13.25168 -13.02554 -12.51188 -12.15981 -12.05237 -11.90170 -11.74885 -11.69353 -11.53736 -11.50657 -11.43628 -11.28513 -11.06654 -10.99040 -10.93891 -10.60374 -10.41629 -10.38063 -10.34079 -10.08548 -9.73234 -9.38528 -8.96327 -8.49356 -6.11562 -4.17151 0.84105 3.18815 3.27375 3.32282 3.34000 4.25609 4.37955 4.44392 4.49778 4.63924 4.78360 4.91927 5.05330 5.08577 5.19181 5.23570 5.24129 5.32116 5.49343 5.55271 5.57600 5.62617 5.67483 5.73561 5.80057 5.81926 5.90186 5.92857 5.97643 6.04673 6.10875 6.16806 6.25378 6.38267 6.45172 6.51924 7.17520 7.31185 7.37720 7.81091 8.18535 8.85945 9.47493 10.99482 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020314 B = 0.004617 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.011699 B = 6063.458522 C = 6573.397384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.069 4.069 3 C -0.145 4.145 4 C -0.108 4.108 5 C -0.123 4.123 6 C -0.119 4.119 7 C -0.140 4.140 8 C 0.166 3.834 9 H 0.084 0.916 10 N -1.121 6.121 11 S 2.590 3.410 12 O -0.970 6.970 13 O -0.965 6.965 14 C -0.590 4.590 15 C 0.029 3.971 16 C -0.520 4.520 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.055 0.945 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.410 0.590 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 9.993 16.011 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.070 4.070 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.179 4.179 8 C 0.058 3.942 9 H 0.102 0.898 10 N -0.878 5.878 11 S 2.688 3.312 12 O -0.961 6.961 13 O -0.955 6.955 14 C -0.723 4.723 15 C -0.010 4.010 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.245 0.755 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.798 9.788 14.977 20.399 hybrid contribution -1.348 -0.369 0.713 1.569 sum 8.450 9.419 15.690 20.157 Atomic orbital electron populations 1.21923 0.93983 1.02524 1.02055 1.20773 0.95902 0.95901 0.94436 1.21971 1.01549 0.95112 1.01604 1.21601 0.95563 1.00736 0.96734 1.21618 0.95634 1.00900 0.97866 1.21520 1.00347 0.99720 0.94110 1.22138 0.95149 1.01614 0.99023 1.20738 0.93925 0.95540 0.83975 0.89816 1.55925 1.82533 1.19186 1.30144 1.05598 0.77244 0.75125 0.73255 1.93548 1.84729 1.58600 1.59185 1.93539 1.47923 1.70411 1.83646 1.30457 1.16956 1.13398 1.11523 1.18946 0.98147 0.94207 0.89719 1.20963 1.14011 1.23033 0.97963 0.92126 1.25059 0.97497 0.96978 0.94887 1.69946 1.41169 1.37561 1.04191 0.86540 0.82474 0.80174 0.78134 1.20098 1.21068 1.20092 0.92590 0.92022 0.92120 0.91796 0.92602 0.92620 0.91530 0.91699 0.92138 0.91716 0.91835 0.91639 0.91329 0.90070 0.75519 0.86459 0.86138 0.94917 0.94873 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.32 37.16 0.31 -1.12 16 2 C -0.07 -0.64 0.59 -154.51 -0.09 -0.73 16 3 C -0.15 -1.20 7.59 37.16 0.28 -0.91 16 4 C -0.11 -0.90 4.73 -26.73 -0.13 -1.02 16 5 C -0.12 -0.97 5.65 -26.73 -0.15 -1.12 16 6 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 7 C -0.14 -1.57 5.25 -26.71 -0.14 -1.71 16 8 C 0.17 1.91 1.70 -67.91 -0.12 1.80 16 9 H 0.08 1.00 7.15 -51.93 -0.37 0.63 16 10 N -1.12 -14.51 4.56 -4.87 -0.02 -14.53 16 11 S 2.59 46.42 5.38 -107.50 -0.58 45.84 16 12 O -0.97 -20.35 18.08 -57.54 -1.04 -21.39 16 13 O -0.97 -19.90 17.11 -57.54 -0.98 -20.88 16 14 C -0.59 -11.24 5.90 37.15 0.22 -11.02 16 15 C 0.03 0.74 4.98 -27.89 -0.14 0.60 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.62 7.60 -51.93 -0.39 0.22 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.51 4.81 -51.93 -0.25 0.26 16 28 H 0.06 0.46 6.51 -51.93 -0.34 0.12 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.48 6.43 -51.93 -0.33 0.15 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.08 1.09 7.43 -51.93 -0.39 0.71 16 38 H 0.41 4.55 6.99 -34.47 -0.24 4.31 16 39 H 0.12 1.99 7.44 -51.92 -0.39 1.61 16 40 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -33.72 340.86 -9.52 -43.24 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.23 Total: 1.83 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -0.52 Total: -29.61 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.71 Total: -40.34 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -2.02 Total: -42.27 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 46.42 SS G_CDS: -0.58 Total: 45.84 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.72 -9.52 -43.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127677457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.298 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds