Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38247 * 120.00039 * 2 1 4 4 C 1.38214 * 120.00227 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99869 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99906 * 359.77231 * 5 4 3 7 7 C 1.38214 * 119.99831 * 180.02562 * 2 1 3 8 8 C 1.50698 * 120.00126 * 359.97438 * 7 2 1 9 9 H 1.08994 * 109.51240 * 34.89570 * 8 7 2 10 10 C 1.53296 * 109.51359 * 274.74274 * 8 7 2 11 11 N 1.47222 * 108.40628 * 187.77062 * 10 8 7 12 12 C 1.34772 * 121.03283 * 230.56480 * 11 10 8 13 13 O 1.21694 * 120.00534 * 174.71965 * 12 11 10 14 14 C 1.46374 * 120.00014 * 354.72283 * 12 11 10 15 15 H 1.08003 * 119.99944 * 5.00167 * 14 12 11 16 16 C 1.40053 * 120.00410 * 184.99750 * 14 12 11 17 17 N 1.30678 * 119.99449 * 0.02562 * 16 14 12 18 18 Si 1.86790 * 120.00421 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47086 * 90.00204 * 18 16 14 20 20 H 1.48498 * 109.47718 * 210.00481 * 18 16 14 21 21 H 1.48504 * 109.47301 * 330.00473 * 18 16 14 22 22 C 1.47159 * 117.98738 * 50.51652 * 11 10 8 23 23 H 1.08994 * 109.68104 * 189.73876 * 22 11 10 24 24 C 1.52999 * 109.68018 * 69.22154 * 22 11 10 25 25 C 1.53296 * 108.41361 * 309.48242 * 22 11 10 26 26 O 1.42957 * 109.22403 * 52.31859 * 25 22 11 27 27 H 1.09000 * 109.47146 * 269.97695 * 1 2 3 28 28 H 1.08993 * 109.47034 * 29.98140 * 1 2 3 29 29 H 1.09004 * 109.47180 * 149.98512 * 1 2 3 30 30 H 1.07997 * 120.00043 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.00246 * 179.97438 * 4 3 2 32 32 H 1.08000 * 119.99855 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.99905 * 180.25107 * 6 5 4 34 34 H 1.09002 * 109.68078 * 307.50062 * 10 8 7 35 35 H 1.09005 * 109.67767 * 68.05268 * 10 8 7 36 36 H 0.97002 * 119.99595 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47377 * 300.52164 * 24 22 11 38 38 H 1.08997 * 109.46835 * 180.51543 * 24 22 11 39 39 H 1.09003 * 109.47019 * 60.51801 * 24 22 11 40 40 H 1.08997 * 109.51090 * 172.24669 * 25 22 11 41 41 H 1.08999 * 109.51034 * 292.39714 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0048 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5326 -2.3959 -0.5879 10 6 1.0856 -2.8861 1.4395 11 7 0.5204 -4.2455 1.4309 12 6 -0.6503 -4.5150 2.0417 13 8 -1.1482 -5.6210 1.9422 14 6 -1.3232 -3.4774 2.8248 15 1 -0.9244 -2.4740 2.8473 16 6 -2.4841 -3.7858 3.5449 17 7 -2.9664 -5.0000 3.5180 18 14 -3.3423 -2.4619 4.5448 19 1 -4.3495 -1.7756 3.6964 20 1 -4.0188 -3.0831 5.7117 21 1 -2.3410 -1.4742 5.0214 22 6 1.2720 -5.3015 0.7341 23 1 0.6601 -6.2005 0.6613 24 6 2.5566 -5.6136 1.5045 25 6 1.6219 -4.7998 -0.6715 26 8 2.2632 -3.5262 -0.5706 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3634 -0.8899 -0.5141 30 1 1.6583 2.1325 -0.0004 31 1 4.1204 2.1326 0.0001 32 1 5.3517 0.0000 0.0005 33 1 4.1207 -2.1322 0.0089 34 1 1.9820 -2.8652 2.0593 35 1 0.3497 -2.1853 1.8337 36 1 -3.7703 -5.2137 4.0171 37 1 3.1658 -4.7125 1.5753 38 1 3.1149 -6.3894 0.9807 39 1 2.3041 -5.9611 2.5063 40 1 2.2944 -5.5089 -1.1542 41 1 0.7101 -4.7026 -1.2608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153899270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = -55.415795 kcal Electronic energy + Delta-G solvation = -23809.698390 eV Core-core repulsion = 20461.450898 eV Total energy + Delta-G solvation = -3348.247491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.02931 -38.64873 -36.65308 -33.77696 -33.39434 -32.47077 -32.15020 -30.49289 -27.62857 -26.59755 -26.27338 -25.67460 -23.49413 -21.96108 -21.11069 -20.24430 -18.51891 -16.99641 -16.29835 -16.18710 -16.00474 -15.05194 -14.96088 -14.77367 -14.29526 -14.08287 -13.99071 -13.46914 -13.27157 -12.99500 -12.71559 -12.64783 -12.16359 -12.10932 -11.91714 -11.79670 -11.56775 -11.23501 -11.07188 -11.03072 -10.94877 -10.84670 -10.68714 -10.29941 -10.11610 -9.90700 -9.45638 -8.90704 -8.67632 -8.49689 -7.64718 -7.24725 -6.25724 -4.71153 1.42934 1.51790 3.09369 3.16865 3.19662 3.80398 3.99798 4.02887 4.37800 4.49596 4.93928 4.97760 5.09068 5.16757 5.32392 5.33096 5.44699 5.51762 5.54238 5.66632 5.78802 5.83311 5.86256 5.91034 5.95332 6.02075 6.04650 6.15347 6.17161 6.25871 6.33594 6.46141 6.55330 6.57733 6.62029 6.73403 6.81587 7.11460 7.38751 7.48265 7.53752 8.05289 8.27815 8.95977 9.34835 10.50537 10.68984 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.006157 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.675662 B = 4546.883323 C = 5992.590760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.124 4.124 4 C -0.121 4.121 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.074 4.074 8 C 0.114 3.886 9 H 0.072 0.928 10 C 0.106 3.894 11 N -0.639 5.639 12 C 0.561 3.439 13 O -0.575 6.575 14 C -0.543 4.543 15 H 0.072 0.928 16 C 0.089 3.911 17 N -0.766 5.766 18 Si 0.904 3.096 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.264 1.264 22 C 0.107 3.893 23 H 0.098 0.902 24 C -0.150 4.150 25 C 0.057 3.943 26 O -0.379 6.379 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.269 0.731 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.094 0.906 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.566 9.814 -6.684 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.107 4.107 7 C -0.074 4.074 8 C 0.056 3.944 9 H 0.089 0.911 10 C -0.019 4.019 11 N -0.377 5.377 12 C 0.367 3.633 13 O -0.458 6.458 14 C -0.579 4.579 15 H 0.090 0.910 16 C -0.131 4.131 17 N -0.395 5.395 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.188 1.188 22 C 0.002 3.998 23 H 0.116 0.884 24 C -0.209 4.209 25 C -0.020 4.020 26 O -0.298 6.298 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.292 9.071 -6.712 15.273 hybrid contribution -0.535 0.659 0.616 1.049 sum 9.757 9.730 -6.096 15.068 Atomic orbital electron populations 1.20946 0.90942 1.02922 1.03289 1.19715 0.96221 0.92255 0.99049 1.20930 0.94197 0.97160 1.01926 1.21082 0.94297 0.97862 1.00645 1.21101 0.99637 0.92550 1.01793 1.20998 0.93589 0.98263 0.97867 1.19472 0.93935 0.92989 1.01048 1.21363 0.92396 0.85000 0.95659 0.91073 1.21969 0.99213 0.86892 0.93798 1.48384 1.23831 1.06455 1.59079 1.18263 0.77711 0.88824 0.78453 1.90596 1.64988 1.25390 1.64811 1.20939 1.10364 0.96270 1.30362 0.91036 1.25714 0.96406 0.95536 0.95482 1.70012 1.17948 1.18876 1.32655 0.86418 0.79812 0.81352 0.79541 1.19623 1.20377 1.18800 1.21417 0.93316 0.93921 0.91170 0.88358 1.21989 0.97434 1.00814 1.00618 1.22974 0.97546 0.84758 0.96740 1.87805 1.40680 1.18718 1.82641 0.90248 0.91651 0.90918 0.86173 0.86466 0.86386 0.85406 0.93036 0.88267 0.92026 0.92669 0.92906 0.92660 0.88757 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 9.49 36.01 0.34 -1.26 16 2 C -0.07 -0.99 5.88 -104.63 -0.62 -1.61 16 3 C -0.12 -1.49 9.70 -39.59 -0.38 -1.87 16 4 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 5 C -0.13 -1.58 10.05 -39.59 -0.40 -1.98 16 6 C -0.09 -1.24 9.35 -39.58 -0.37 -1.61 16 7 C -0.07 -1.11 5.07 -104.62 -0.53 -1.64 16 8 C 0.11 1.92 2.50 -27.73 -0.07 1.85 16 9 H 0.07 1.24 6.16 -51.93 -0.32 0.92 16 10 C 0.11 2.04 5.39 -3.49 -0.02 2.02 16 11 N -0.64 -14.44 2.72 -166.33 -0.45 -14.90 16 12 C 0.56 15.70 7.63 -12.99 -0.10 15.60 16 13 O -0.58 -18.30 14.51 5.19 0.08 -18.23 16 14 C -0.54 -14.87 8.86 -35.63 -0.32 -15.19 16 15 H 0.07 1.79 5.77 -52.48 -0.30 1.49 16 16 C 0.09 2.42 5.50 -17.36 -0.10 2.32 16 17 N -0.77 -22.55 11.84 55.55 0.66 -21.90 16 18 Si 0.90 19.68 29.56 -169.99 -5.02 14.65 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 22 C 0.11 2.09 3.24 -67.42 -0.22 1.87 16 23 H 0.10 2.14 7.06 -51.93 -0.37 1.77 16 24 C -0.15 -2.57 9.24 37.16 0.34 -2.22 16 25 C 0.06 0.94 6.36 37.31 0.24 1.18 16 26 O -0.38 -6.34 8.87 -35.23 -0.31 -6.66 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 1.00 6.03 -51.93 -0.31 0.69 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.76 7.36 -52.48 -0.39 1.38 16 34 H 0.05 0.98 7.65 -51.93 -0.40 0.58 16 35 H 0.10 1.97 5.39 -51.93 -0.28 1.69 16 36 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 37 H 0.05 0.92 7.21 -51.93 -0.37 0.55 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -32.96 330.99 -8.33 -41.30 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.68 Total: 5.04 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.59 Total: -4.30 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.21 Total: -36.79 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.24 Total: -24.88 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.96 -8.33 -41.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153899270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.118 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds