Wall clock time and date at job start Tue Mar 31 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38247 * 120.00039 * 2 1 4 4 C 1.38214 * 120.00227 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99869 * 0.02562 * 4 3 2 6 6 C 1.38209 * 119.99906 * 359.77231 * 5 4 3 7 7 C 1.38214 * 119.99831 * 180.02562 * 2 1 3 8 8 C 1.50698 * 120.00126 * 359.97438 * 7 2 1 9 9 H 1.08994 * 109.51240 * 34.89570 * 8 7 2 10 10 C 1.53296 * 109.51359 * 274.74274 * 8 7 2 11 11 N 1.47222 * 108.40628 * 187.77062 * 10 8 7 12 12 C 1.34772 * 121.03283 * 230.56480 * 11 10 8 13 13 O 1.21694 * 120.00534 * 174.71965 * 12 11 10 14 14 C 1.46374 * 120.00014 * 354.72283 * 12 11 10 15 15 H 1.08003 * 119.99944 * 5.00167 * 14 12 11 16 16 C 1.40053 * 120.00410 * 184.99750 * 14 12 11 17 17 N 1.30678 * 119.99449 * 0.02562 * 16 14 12 18 18 Si 1.86790 * 120.00421 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47086 * 90.00204 * 18 16 14 20 20 H 1.48498 * 109.47718 * 210.00481 * 18 16 14 21 21 H 1.48504 * 109.47301 * 330.00473 * 18 16 14 22 22 C 1.47159 * 117.98738 * 50.51652 * 11 10 8 23 23 H 1.08994 * 109.68104 * 189.73876 * 22 11 10 24 24 C 1.52999 * 109.68018 * 69.22154 * 22 11 10 25 25 C 1.53296 * 108.41361 * 309.48242 * 22 11 10 26 26 O 1.42957 * 109.22403 * 52.31859 * 25 22 11 27 27 H 1.09000 * 109.47146 * 269.97695 * 1 2 3 28 28 H 1.08993 * 109.47034 * 29.98140 * 1 2 3 29 29 H 1.09004 * 109.47180 * 149.98512 * 1 2 3 30 30 H 1.07997 * 120.00043 * 359.97438 * 3 2 1 31 31 H 1.08003 * 120.00246 * 179.97438 * 4 3 2 32 32 H 1.08000 * 119.99855 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.99905 * 180.25107 * 6 5 4 34 34 H 1.09002 * 109.68078 * 307.50062 * 10 8 7 35 35 H 1.09005 * 109.67767 * 68.05268 * 10 8 7 36 36 H 0.97002 * 119.99595 * 179.97438 * 17 16 14 37 37 H 1.09000 * 109.47377 * 300.52164 * 24 22 11 38 38 H 1.08997 * 109.46835 * 180.51543 * 24 22 11 39 39 H 1.09003 * 109.47019 * 60.51801 * 24 22 11 40 40 H 1.08997 * 109.51090 * 172.24669 * 25 22 11 41 41 H 1.08999 * 109.51034 * 292.39714 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0048 7 6 2.1980 -1.1970 -0.0005 8 6 1.4445 -2.5021 -0.0005 9 1 0.5326 -2.3959 -0.5879 10 6 1.0856 -2.8861 1.4395 11 7 0.5204 -4.2455 1.4309 12 6 -0.6503 -4.5150 2.0417 13 8 -1.1482 -5.6210 1.9422 14 6 -1.3232 -3.4774 2.8248 15 1 -0.9244 -2.4740 2.8473 16 6 -2.4841 -3.7858 3.5449 17 7 -2.9664 -5.0000 3.5180 18 14 -3.3423 -2.4619 4.5448 19 1 -4.3495 -1.7756 3.6964 20 1 -4.0188 -3.0831 5.7117 21 1 -2.3410 -1.4742 5.0214 22 6 1.2720 -5.3015 0.7341 23 1 0.6601 -6.2005 0.6613 24 6 2.5566 -5.6136 1.5045 25 6 1.6219 -4.7998 -0.6715 26 8 2.2632 -3.5262 -0.5706 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8901 -0.5135 29 1 -0.3634 -0.8899 -0.5141 30 1 1.6583 2.1325 -0.0004 31 1 4.1204 2.1326 0.0001 32 1 5.3517 0.0000 0.0005 33 1 4.1207 -2.1322 0.0089 34 1 1.9820 -2.8652 2.0593 35 1 0.3497 -2.1853 1.8337 36 1 -3.7703 -5.2137 4.0171 37 1 3.1658 -4.7125 1.5753 38 1 3.1149 -6.3894 0.9807 39 1 2.3041 -5.9611 2.5063 40 1 2.2944 -5.5089 -1.1542 41 1 0.7101 -4.7026 -1.2608 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153899270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:52 Heat of formation + Delta-G solvation = -75.695569 kcal Electronic energy + Delta-G solvation = -23810.577787 eV Core-core repulsion = 20461.450898 eV Total energy + Delta-G solvation = -3349.126888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.36514 -39.95512 -38.49687 -35.52635 -34.73993 -34.44126 -33.31455 -31.80930 -29.07325 -28.23459 -27.66178 -27.14613 -24.86591 -23.35605 -22.48020 -21.44071 -20.22616 -18.71949 -17.98564 -17.51529 -17.44839 -16.71199 -16.36257 -16.06293 -15.83898 -15.38468 -15.14045 -15.06152 -14.73039 -14.36696 -14.19626 -13.90354 -13.59628 -13.38673 -13.36714 -13.13634 -13.04123 -12.76938 -12.75812 -12.69710 -12.36086 -12.14356 -12.06948 -11.89921 -11.73330 -11.32579 -11.01201 -10.89056 -9.87577 -9.66646 -9.50696 -9.04998 -8.32358 -6.87812 0.43554 0.55488 1.37520 1.38638 1.53741 2.19546 2.41881 2.54934 2.72698 2.91316 3.53933 3.82466 3.84488 3.92969 4.00208 4.07576 4.17234 4.25194 4.31741 4.36398 4.47851 4.52229 4.62451 4.64295 4.76482 4.80111 4.82302 4.87186 4.93365 5.00185 5.01268 5.20033 5.27189 5.33059 5.34674 5.60755 5.66399 5.67788 5.76181 6.05679 6.14396 6.19484 6.33236 6.84310 7.33618 8.41292 8.63117 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.006157 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.675662 B = 4546.883323 C = 5992.590760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.133 4.133 6 C -0.101 4.101 7 C -0.097 4.097 8 C 0.126 3.874 9 H 0.060 0.940 10 C 0.110 3.890 11 N -0.642 5.642 12 C 0.544 3.456 13 O -0.628 6.628 14 C -0.566 4.566 15 H 0.090 0.910 16 C 0.032 3.968 17 N -0.820 5.820 18 Si 0.990 3.010 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.248 1.248 22 C 0.097 3.903 23 H 0.068 0.932 24 C -0.138 4.138 25 C 0.066 3.934 26 O -0.374 6.374 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.054 0.946 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.274 0.726 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.030 0.970 40 H 0.133 0.867 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.336 12.957 -6.945 19.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.133 4.133 5 C -0.150 4.150 6 C -0.120 4.120 7 C -0.097 4.097 8 C 0.067 3.933 9 H 0.077 0.923 10 C -0.014 4.014 11 N -0.379 5.379 12 C 0.351 3.649 13 O -0.516 6.516 14 C -0.602 4.602 15 H 0.108 0.892 16 C -0.184 4.184 17 N -0.450 5.450 18 Si 0.810 3.190 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.171 1.171 22 C -0.007 4.007 23 H 0.086 0.914 24 C -0.196 4.196 25 C -0.012 4.012 26 O -0.293 6.293 27 H 0.090 0.910 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.163 0.837 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.142 0.858 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.151 0.849 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.124 12.244 -7.005 18.600 hybrid contribution -0.989 -0.305 0.643 1.218 sum 11.135 11.939 -6.362 17.521 Atomic orbital electron populations 1.20930 0.90967 1.03229 1.02861 1.19875 0.96464 0.92650 0.99547 1.21258 0.94873 0.97302 1.00901 1.21504 0.94162 0.98978 0.98621 1.21420 1.01027 0.91960 1.00625 1.21080 0.93122 0.99214 0.98538 1.19392 0.94538 0.92187 1.03627 1.21166 0.92577 0.86175 0.93343 0.92278 1.22038 0.98587 0.84779 0.95995 1.48231 1.22854 1.08609 1.58219 1.18643 0.79098 0.88376 0.78832 1.90541 1.66997 1.27206 1.66816 1.21430 1.11147 0.97062 1.30593 0.89234 1.26946 0.96868 0.98189 0.96361 1.70184 1.18840 1.21857 1.34083 0.85121 0.78637 0.77760 0.77523 1.18312 1.19792 1.17107 1.21662 0.93503 0.92192 0.93358 0.91380 1.21886 0.96330 1.02128 0.99287 1.22982 0.98290 0.85419 0.94482 1.87825 1.40514 1.18601 1.82318 0.91018 0.89306 0.92670 0.83742 0.83237 0.83827 0.85773 0.92686 0.89306 0.91560 0.91975 0.89387 0.95066 0.84885 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.49 71.24 0.68 -2.41 16 2 C -0.09 -2.21 5.88 -19.87 -0.12 -2.32 16 3 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 4 C -0.11 -2.12 10.05 22.27 0.22 -1.90 16 5 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 6 C -0.10 -2.63 9.35 22.27 0.21 -2.42 16 7 C -0.10 -2.81 5.07 -19.87 -0.10 -2.92 16 8 C 0.13 4.24 2.50 29.95 0.07 4.32 16 9 H 0.06 2.13 6.16 -2.39 -0.01 2.11 16 10 C 0.11 4.31 5.39 86.34 0.47 4.78 16 11 N -0.64 -30.25 2.72 -798.37 -2.17 -32.42 16 12 C 0.54 32.03 7.63 86.36 0.66 32.69 16 13 O -0.63 -42.52 14.51 -4.33 -0.06 -42.58 16 14 C -0.57 -32.02 8.86 24.83 0.22 -31.80 16 15 H 0.09 4.56 5.77 -2.91 -0.02 4.54 16 16 C 0.03 1.76 5.50 85.30 0.47 2.23 16 17 N -0.82 -50.22 11.84 21.84 0.26 -49.96 16 18 Si 0.99 40.62 29.56 68.60 2.03 42.65 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 22 C 0.10 3.91 3.24 44.96 0.15 4.05 16 23 H 0.07 3.15 7.06 -2.39 -0.02 3.13 16 24 C -0.14 -4.69 9.24 71.98 0.67 -4.03 16 25 C 0.07 2.13 6.36 72.08 0.46 2.59 16 26 O -0.37 -12.21 8.87 -148.98 -1.32 -13.53 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 1.74 8.08 -2.39 -0.02 1.72 16 29 H 0.05 1.55 6.03 -2.39 -0.01 1.54 16 30 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 33 H 0.12 3.23 7.36 -2.91 -0.02 3.21 16 34 H 0.05 2.11 7.65 -2.39 -0.02 2.09 16 35 H 0.09 3.64 5.39 -2.38 -0.01 3.62 16 36 H 0.27 15.22 8.29 -92.71 -0.77 14.46 16 37 H 0.06 2.01 7.21 -2.39 -0.02 2.00 16 38 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -75.78 330.99 4.25 -71.53 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 1.03 Total: 26.33 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 4.49 Total: -2.02 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.91 Total: -82.38 kcal Atomic # 8 Polarization: -54.73 SS G_CDS: -1.38 Total: -56.11 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -75.78 4.25 -71.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153899270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.166 kcal (2) G-P(sol) polarization free energy of solvation -75.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds