Wall clock time and date at job start Tue Mar 31 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00514 * 2 1 4 4 C 1.38212 * 120.00196 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99802 * 359.97438 * 4 3 2 6 6 C 1.38207 * 120.00059 * 359.81277 * 5 4 3 7 7 C 1.38216 * 119.99742 * 180.02562 * 2 1 3 8 8 C 1.50704 * 120.00112 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.50860 * 34.88985 * 8 7 2 10 10 C 1.52881 * 109.57820 * 274.87727 * 8 7 2 11 11 N 1.47155 * 108.60572 * 187.92016 * 10 8 7 12 12 C 1.34773 * 120.97953 * 230.49997 * 11 10 8 13 13 O 1.21694 * 119.99507 * 175.27571 * 12 11 10 14 14 C 1.46368 * 120.00348 * 355.27294 * 12 11 10 15 15 H 1.07999 * 120.00156 * 336.48540 * 14 12 11 16 16 C 1.40051 * 120.00149 * 156.48569 * 14 12 11 17 17 N 1.30672 * 119.99534 * 339.08088 * 16 14 12 18 18 Si 1.86798 * 120.00238 * 159.07844 * 16 14 12 19 19 H 1.48504 * 109.47255 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47398 * 300.00494 * 18 16 14 21 21 H 1.48508 * 109.46913 * 60.00240 * 18 16 14 22 22 C 1.47148 * 118.03452 * 50.22665 * 11 10 8 23 23 H 1.09006 * 109.68408 * 69.43536 * 22 11 10 24 24 C 1.53001 * 109.68376 * 189.99051 * 22 11 10 25 25 C 1.53300 * 108.38598 * 309.71894 * 22 11 10 26 26 O 1.42954 * 109.51505 * 154.99537 * 8 7 2 27 27 H 1.08998 * 109.47572 * 269.98882 * 1 2 3 28 28 H 1.09008 * 109.46734 * 29.98352 * 1 2 3 29 29 H 1.08996 * 109.47231 * 149.97529 * 1 2 3 30 30 H 1.08004 * 119.99568 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.99979 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.99494 * 180.02562 * 5 4 3 33 33 H 1.08006 * 119.99693 * 180.23384 * 6 5 4 34 34 H 1.08999 * 109.62034 * 68.10251 * 10 8 7 35 35 H 1.09002 * 109.52357 * 307.68292 * 10 8 7 36 36 H 0.96997 * 120.00452 * 355.88258 * 17 16 14 37 37 H 1.08998 * 109.46949 * 51.83915 * 24 22 11 38 38 H 1.08996 * 109.47281 * 171.84004 * 24 22 11 39 39 H 1.08999 * 109.47260 * 291.84531 * 24 22 11 40 40 H 1.09001 * 109.51323 * 172.22798 * 25 22 11 41 41 H 1.09008 * 109.50601 * 292.32329 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5805 -1.1970 0.0061 7 6 2.1980 -1.1970 -0.0005 8 6 1.4444 -2.5021 -0.0005 9 1 0.5323 -2.3958 -0.5879 10 6 1.0828 -2.8849 1.4347 11 7 0.5207 -4.2448 1.4305 12 6 -0.6501 -4.5134 2.0416 13 8 -1.1413 -5.6234 1.9545 14 6 -1.3309 -3.4702 2.8101 15 1 -0.7677 -2.6406 3.2113 16 6 -2.7126 -3.5477 3.0251 17 7 -3.4562 -4.2793 2.2380 18 14 -3.4926 -2.6053 4.4368 19 1 -4.9569 -2.8524 4.4478 20 1 -2.9035 -3.0611 5.7215 21 1 -3.2375 -1.1527 4.2630 22 6 1.2717 -5.3014 0.7342 23 1 2.1869 -5.5238 1.2829 24 6 0.4119 -6.5629 0.6321 25 6 1.6216 -4.7998 -0.6715 26 8 2.2629 -3.5262 -0.5706 27 1 -0.3634 -0.0002 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.3516 -0.0002 0.0024 33 1 4.1205 -2.1324 0.0107 34 1 0.3452 -2.1840 1.8256 35 1 1.9786 -2.8598 2.0552 36 1 -3.0613 -4.7206 1.4699 37 1 -0.5577 -6.3080 0.2044 38 1 0.9105 -7.2917 -0.0068 39 1 0.2702 -6.9875 1.6259 40 1 2.2940 -5.5089 -1.1542 41 1 0.7097 -4.7034 -1.2610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153899476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:00 Heat of formation + Delta-G solvation = -55.675409 kcal Electronic energy + Delta-G solvation = -23901.056980 eV Core-core repulsion = 20552.798231 eV Total energy + Delta-G solvation = -3348.258749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.09625 -38.81898 -37.05868 -33.85138 -33.52798 -32.54630 -32.16785 -30.69576 -27.62658 -26.62064 -25.71023 -25.59514 -23.14136 -21.99398 -21.32359 -20.36153 -19.25853 -17.28875 -16.44409 -16.37544 -15.50908 -15.25991 -14.87951 -14.56918 -14.50840 -14.08018 -13.90237 -13.80020 -13.51501 -13.04584 -12.93773 -12.37995 -12.22793 -12.06173 -11.94283 -11.78697 -11.53822 -11.34904 -11.03700 -10.97928 -10.87621 -10.67559 -10.56506 -10.27195 -10.16781 -9.94672 -9.65789 -8.77359 -8.70597 -8.52405 -7.43569 -7.41701 -6.79728 -4.74696 1.40046 1.49216 3.22434 3.29081 3.47208 3.75984 3.94855 4.04601 4.32214 4.39339 4.91037 4.95404 5.05131 5.13967 5.23678 5.30201 5.38164 5.44316 5.51728 5.63069 5.67937 5.74463 5.81683 5.85163 5.95934 6.01164 6.05235 6.11514 6.19938 6.30718 6.33412 6.41040 6.55280 6.59685 6.75694 6.83710 7.08105 7.14603 7.34278 7.45923 7.82659 7.96054 8.29369 8.79306 9.30087 10.26200 10.47387 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.006257 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.447155 B = 4474.050802 C = 5966.997798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.075 4.075 8 C 0.116 3.884 9 H 0.072 0.928 10 C 0.106 3.894 11 N -0.637 5.637 12 C 0.563 3.437 13 O -0.608 6.608 14 C -0.620 4.620 15 H 0.068 0.932 16 C 0.057 3.943 17 N -0.806 5.806 18 Si 1.070 2.930 19 H -0.277 1.277 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.114 3.886 23 H 0.055 0.945 24 C -0.121 4.121 25 C 0.055 3.945 26 O -0.382 6.382 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.298 0.702 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.911 9.026 -5.394 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.071 4.071 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.107 4.107 7 C -0.076 4.076 8 C 0.057 3.943 9 H 0.090 0.910 10 C -0.018 4.018 11 N -0.374 5.374 12 C 0.372 3.628 13 O -0.496 6.496 14 C -0.656 4.656 15 H 0.086 0.914 16 C -0.165 4.165 17 N -0.434 5.434 18 Si 0.895 3.105 19 H -0.201 1.201 20 H -0.204 1.204 21 H -0.206 1.206 22 C 0.009 3.991 23 H 0.073 0.927 24 C -0.178 4.178 25 C -0.023 4.023 26 O -0.301 6.301 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.145 0.855 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.397 8.708 -4.755 13.665 hybrid contribution 1.543 -0.240 -0.720 1.720 sum 10.940 8.468 -5.475 14.878 Atomic orbital electron populations 1.20943 0.90823 1.02908 1.03394 1.19731 0.96273 0.92222 0.98843 1.20943 0.94194 0.97174 1.01872 1.21091 0.94296 0.97875 1.00514 1.21099 0.99653 0.92519 1.01821 1.20994 0.93558 0.98293 0.97901 1.19441 0.93928 0.92891 1.01344 1.21262 0.92457 0.85083 0.95455 0.91019 1.21889 0.99170 0.86624 0.94167 1.48261 1.24454 1.06760 1.57918 1.18350 0.77543 0.88644 0.78276 1.90562 1.66467 1.24733 1.67869 1.21795 0.95972 1.10670 1.37133 0.91354 1.26561 0.93720 0.96300 0.99967 1.70207 1.40405 1.21327 1.11435 0.83594 0.76411 0.75534 0.74977 1.20149 1.20425 1.20605 1.21616 0.95225 0.90111 0.92119 0.92730 1.21997 0.99127 0.93987 1.02679 1.23080 0.97697 0.84608 0.96886 1.87812 1.40782 1.18785 1.82705 0.90130 0.91591 0.91020 0.86079 0.86390 0.86336 0.85453 0.87799 0.93121 0.88820 0.90852 0.95851 0.90862 0.88682 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.46 36.00 0.34 -1.33 16 2 C -0.07 -0.99 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.50 9.70 -39.58 -0.38 -1.89 16 4 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 5 C -0.13 -1.60 10.05 -39.59 -0.40 -1.99 16 6 C -0.09 -1.26 9.35 -39.59 -0.37 -1.63 16 7 C -0.08 -1.16 5.06 -104.62 -0.53 -1.69 16 8 C 0.12 2.00 2.48 -27.94 -0.07 1.93 16 9 H 0.07 1.30 6.16 -51.93 -0.32 0.98 16 10 C 0.11 2.08 5.70 -3.75 -0.02 2.06 16 11 N -0.64 -14.42 3.03 -166.64 -0.50 -14.92 16 12 C 0.56 15.27 7.02 -12.99 -0.09 15.18 16 13 O -0.61 -17.90 10.61 5.19 0.06 -17.84 16 14 C -0.62 -16.85 8.31 -35.63 -0.30 -17.14 16 15 H 0.07 1.75 6.60 -52.49 -0.35 1.41 16 16 C 0.06 1.54 5.33 -17.37 -0.09 1.45 16 17 N -0.81 -23.52 13.26 55.55 0.74 -22.78 16 18 Si 1.07 23.02 29.98 -169.99 -5.10 17.92 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 22 C 0.11 2.25 3.69 -67.42 -0.25 2.00 16 23 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 24 C -0.12 -2.47 7.63 37.16 0.28 -2.19 16 25 C 0.05 0.92 6.28 37.31 0.23 1.16 16 26 O -0.38 -6.60 9.23 -35.23 -0.33 -6.93 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 0.74 8.09 -51.92 -0.42 0.32 16 29 H 0.07 1.04 6.03 -51.93 -0.31 0.73 16 30 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 1.79 7.36 -52.48 -0.39 1.40 16 34 H 0.10 2.12 5.71 -51.93 -0.30 1.83 16 35 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 36 H 0.30 9.11 6.76 -40.82 -0.28 8.83 16 37 H 0.07 1.70 6.72 -51.93 -0.35 1.35 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 1.69 6.85 -51.93 -0.36 1.33 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 41 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -31.18 326.69 -8.53 -39.71 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.66 Total: 7.37 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -2.66 Total: -7.46 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.23 Total: -37.70 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.27 Total: -24.77 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.10 Total: 17.92 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.18 -8.53 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153899476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.967 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds