Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 120.00514 * 2 1 4 4 C 1.38212 * 120.00196 * 179.97438 * 3 2 1 5 5 C 1.38257 * 119.99802 * 359.97438 * 4 3 2 6 6 C 1.38207 * 120.00059 * 359.81277 * 5 4 3 7 7 C 1.38216 * 119.99742 * 180.02562 * 2 1 3 8 8 C 1.50704 * 120.00112 * 359.97438 * 7 2 1 9 9 H 1.09005 * 109.50860 * 34.88985 * 8 7 2 10 10 C 1.52881 * 109.57820 * 274.87727 * 8 7 2 11 11 N 1.47155 * 108.60572 * 187.92016 * 10 8 7 12 12 C 1.34773 * 120.97953 * 230.49997 * 11 10 8 13 13 O 1.21694 * 119.99507 * 175.27571 * 12 11 10 14 14 C 1.46368 * 120.00348 * 355.27294 * 12 11 10 15 15 H 1.07999 * 120.00156 * 336.48540 * 14 12 11 16 16 C 1.40051 * 120.00149 * 156.48569 * 14 12 11 17 17 N 1.30672 * 119.99534 * 339.08088 * 16 14 12 18 18 Si 1.86798 * 120.00238 * 159.07844 * 16 14 12 19 19 H 1.48504 * 109.47255 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47398 * 300.00494 * 18 16 14 21 21 H 1.48508 * 109.46913 * 60.00240 * 18 16 14 22 22 C 1.47148 * 118.03452 * 50.22665 * 11 10 8 23 23 H 1.09006 * 109.68408 * 69.43536 * 22 11 10 24 24 C 1.53001 * 109.68376 * 189.99051 * 22 11 10 25 25 C 1.53300 * 108.38598 * 309.71894 * 22 11 10 26 26 O 1.42954 * 109.51505 * 154.99537 * 8 7 2 27 27 H 1.08998 * 109.47572 * 269.98882 * 1 2 3 28 28 H 1.09008 * 109.46734 * 29.98352 * 1 2 3 29 29 H 1.08996 * 109.47231 * 149.97529 * 1 2 3 30 30 H 1.08004 * 119.99568 * 359.97438 * 3 2 1 31 31 H 1.07996 * 119.99979 * 180.02562 * 4 3 2 32 32 H 1.07998 * 119.99494 * 180.02562 * 5 4 3 33 33 H 1.08006 * 119.99693 * 180.23384 * 6 5 4 34 34 H 1.08999 * 109.62034 * 68.10251 * 10 8 7 35 35 H 1.09002 * 109.52357 * 307.68292 * 10 8 7 36 36 H 0.96997 * 120.00452 * 355.88258 * 17 16 14 37 37 H 1.08998 * 109.46949 * 51.83915 * 24 22 11 38 38 H 1.08996 * 109.47281 * 171.84004 * 24 22 11 39 39 H 1.08999 * 109.47260 * 291.84531 * 24 22 11 40 40 H 1.09001 * 109.51323 * 172.22798 * 25 22 11 41 41 H 1.09008 * 109.50601 * 292.32329 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5805 -1.1970 0.0061 7 6 2.1980 -1.1970 -0.0005 8 6 1.4444 -2.5021 -0.0005 9 1 0.5323 -2.3958 -0.5879 10 6 1.0828 -2.8849 1.4347 11 7 0.5207 -4.2448 1.4305 12 6 -0.6501 -4.5134 2.0416 13 8 -1.1413 -5.6234 1.9545 14 6 -1.3309 -3.4702 2.8101 15 1 -0.7677 -2.6406 3.2113 16 6 -2.7126 -3.5477 3.0251 17 7 -3.4562 -4.2793 2.2380 18 14 -3.4926 -2.6053 4.4368 19 1 -4.9569 -2.8524 4.4478 20 1 -2.9035 -3.0611 5.7215 21 1 -3.2375 -1.1527 4.2630 22 6 1.2717 -5.3014 0.7342 23 1 2.1869 -5.5238 1.2829 24 6 0.4119 -6.5629 0.6321 25 6 1.6216 -4.7998 -0.6715 26 8 2.2629 -3.5262 -0.5706 27 1 -0.3634 -0.0002 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8897 -0.5142 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1325 0.0010 32 1 5.3516 -0.0002 0.0024 33 1 4.1205 -2.1324 0.0107 34 1 0.3452 -2.1840 1.8256 35 1 1.9786 -2.8598 2.0552 36 1 -3.0613 -4.7206 1.4699 37 1 -0.5577 -6.3080 0.2044 38 1 0.9105 -7.2917 -0.0068 39 1 0.2702 -6.9875 1.6259 40 1 2.2940 -5.5089 -1.1542 41 1 0.7097 -4.7034 -1.2610 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153899476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = -74.200314 kcal Electronic energy + Delta-G solvation = -23901.860280 eV Core-core repulsion = 20552.798231 eV Total energy + Delta-G solvation = -3349.062049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.50965 -40.19186 -38.76773 -35.65245 -34.98267 -34.36719 -33.44661 -32.02850 -29.06630 -27.83727 -27.55632 -27.20050 -24.50452 -23.60667 -22.58852 -21.51385 -21.11208 -19.10767 -17.80166 -17.67254 -17.11164 -16.91689 -16.24875 -16.09470 -15.89577 -15.57621 -15.33926 -15.30881 -14.79700 -14.61720 -14.10175 -13.96383 -13.75090 -13.53786 -13.29414 -13.18718 -13.12062 -12.87484 -12.64339 -12.61943 -12.22417 -12.10523 -11.98816 -11.87827 -11.80891 -11.55068 -11.15394 -10.81891 -9.77255 -9.57569 -9.49146 -9.24863 -8.90391 -6.92526 0.38400 0.50859 1.49460 1.54720 1.80636 2.23577 2.37061 2.48987 2.61354 2.86239 3.33420 3.70216 3.75661 3.84589 3.95068 4.01487 4.10945 4.12304 4.18968 4.28857 4.41391 4.46662 4.54609 4.59003 4.71334 4.74097 4.74835 4.80396 4.87157 4.94832 5.10413 5.16128 5.28987 5.35058 5.49501 5.55892 5.63135 5.69451 5.71417 5.98719 6.05945 6.12469 6.15331 6.73889 7.25739 8.16782 8.26294 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.006257 C = 0.004691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.447155 B = 4474.050802 C = 5966.997798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 C -0.124 4.124 4 C -0.113 4.113 5 C -0.131 4.131 6 C -0.102 4.102 7 C -0.099 4.099 8 C 0.128 3.872 9 H 0.056 0.944 10 C 0.109 3.891 11 N -0.642 5.642 12 C 0.549 3.451 13 O -0.641 6.641 14 C -0.639 4.639 15 H 0.079 0.921 16 C 0.012 3.988 17 N -0.834 5.834 18 Si 1.122 2.878 19 H -0.276 1.276 20 H -0.269 1.269 21 H -0.248 1.248 22 C 0.106 3.894 23 H 0.068 0.932 24 C -0.107 4.107 25 C 0.062 3.938 26 O -0.378 6.378 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.276 0.724 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.136 0.864 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.112 11.530 -5.481 18.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.130 4.130 5 C -0.149 4.149 6 C -0.120 4.120 7 C -0.100 4.100 8 C 0.069 3.931 9 H 0.074 0.926 10 C -0.015 4.015 11 N -0.377 5.377 12 C 0.357 3.643 13 O -0.532 6.532 14 C -0.675 4.675 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.462 5.462 18 Si 0.939 3.061 19 H -0.201 1.201 20 H -0.194 1.194 21 H -0.172 1.172 22 C 0.002 3.998 23 H 0.085 0.915 24 C -0.164 4.164 25 C -0.015 4.015 26 O -0.297 6.297 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.153 0.847 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.655 11.230 -4.875 16.903 hybrid contribution 0.992 -1.018 -0.735 1.601 sum 12.647 10.212 -5.611 17.197 Atomic orbital electron populations 1.20904 0.91114 1.03050 1.02754 1.19865 0.96317 0.92728 0.99565 1.21272 0.94929 0.97235 1.00779 1.21524 0.94081 0.99049 0.98381 1.21433 1.01101 0.91866 1.00492 1.21075 0.93013 0.99300 0.98615 1.19368 0.94589 0.92047 1.03964 1.21059 0.92488 0.86327 0.93216 0.92614 1.21961 0.98576 0.84727 0.96250 1.48190 1.23647 1.08765 1.57144 1.18601 0.78895 0.88296 0.78535 1.90547 1.67932 1.25871 1.68844 1.22142 0.96618 1.11130 1.37595 0.90292 1.28297 0.94602 0.95996 1.01414 1.70356 1.40480 1.23401 1.11934 0.82984 0.75417 0.75951 0.71744 1.20107 1.19358 1.17186 1.21877 0.94873 0.89121 0.93886 0.91457 1.21724 0.98090 0.95330 1.01286 1.23107 0.98416 0.85229 0.94778 1.87831 1.40675 1.18790 1.82403 0.91155 0.89217 0.93112 0.83617 0.82992 0.83630 0.85840 0.89148 0.92550 0.91272 0.94401 0.91418 0.94140 0.84677 0.94061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.26 9.46 71.23 0.67 -2.59 16 2 C -0.08 -2.27 5.88 -19.87 -0.12 -2.39 16 3 C -0.12 -2.63 9.70 22.27 0.22 -2.42 16 4 C -0.11 -2.09 10.05 22.27 0.22 -1.87 16 5 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 6 C -0.10 -2.70 9.35 22.27 0.21 -2.49 16 7 C -0.10 -2.97 5.06 -19.86 -0.10 -3.07 16 8 C 0.13 4.45 2.48 29.81 0.07 4.52 16 9 H 0.06 2.11 6.16 -2.38 -0.01 2.10 16 10 C 0.11 4.34 5.70 86.21 0.49 4.84 16 11 N -0.64 -29.96 3.03 -799.35 -2.42 -32.38 16 12 C 0.55 31.13 7.02 86.36 0.61 31.74 16 13 O -0.64 -39.89 10.61 -4.33 -0.05 -39.94 16 14 C -0.64 -35.83 8.31 24.83 0.21 -35.62 16 15 H 0.08 4.13 6.60 -2.91 -0.02 4.11 16 16 C 0.01 0.67 5.33 85.31 0.45 1.13 16 17 N -0.83 -50.72 13.26 21.84 0.29 -50.43 16 18 Si 1.12 46.26 29.98 68.60 2.06 48.32 16 19 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 22 C 0.11 4.19 3.69 44.97 0.17 4.36 16 23 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 24 C -0.11 -4.48 7.63 71.98 0.55 -3.93 16 25 C 0.06 2.03 6.28 72.08 0.45 2.48 16 26 O -0.38 -12.76 9.23 -148.98 -1.38 -14.14 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.09 1.89 8.09 -2.38 -0.02 1.87 16 29 H 0.05 1.54 6.03 -2.39 -0.01 1.53 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.12 3.28 7.36 -2.91 -0.02 3.26 16 34 H 0.09 3.83 5.71 -2.39 -0.01 3.82 16 35 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 36 H 0.28 17.90 6.76 -92.71 -0.63 17.27 16 37 H 0.04 1.83 6.72 -2.39 -0.02 1.82 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.04 1.93 6.85 -2.39 -0.02 1.91 16 40 H 0.14 3.36 8.14 -2.39 -0.02 3.34 16 41 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -71.57 326.69 4.01 -67.57 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: 1.17 Total: 28.81 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.33 Total: -7.80 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -2.13 Total: -82.81 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -1.42 Total: -54.08 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.06 Total: 48.32 kcal Total: -71.57 4.01 -67.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153899476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.633 kcal (2) G-P(sol) polarization free energy of solvation -71.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds