Wall clock time and date at job start Tue Mar 31 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 120.00176 * 2 1 4 4 C 1.38205 * 120.00132 * 179.97438 * 3 2 1 5 5 C 1.38264 * 120.00345 * 359.95528 * 4 3 2 6 6 C 1.38215 * 119.99242 * 0.02562 * 5 4 3 7 7 C 1.38221 * 119.99752 * 179.72370 * 2 1 3 8 8 C 1.50694 * 120.00116 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.51312 * 324.89761 * 8 7 2 10 10 C 1.53297 * 109.51298 * 85.00076 * 8 7 2 11 11 N 1.47156 * 108.38713 * 172.22763 * 10 8 7 12 12 C 1.34768 * 120.98378 * 129.48504 * 11 10 8 13 13 O 1.21688 * 120.00216 * 175.30497 * 12 11 10 14 14 C 1.46372 * 120.00233 * 355.30237 * 12 11 10 15 15 H 1.08001 * 120.00084 * 7.70037 * 14 12 11 16 16 C 1.40048 * 120.00168 * 187.69743 * 14 12 11 17 17 N 1.30668 * 120.00138 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99828 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47518 * 59.99968 * 18 16 14 20 20 H 1.48504 * 109.46951 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47198 * 299.99584 * 18 16 14 22 22 C 1.47151 * 118.03138 * 309.46126 * 11 10 8 23 23 H 1.09000 * 109.67771 * 170.25507 * 22 11 10 24 24 C 1.52999 * 109.68293 * 290.81473 * 22 11 10 25 25 C 1.53296 * 108.38295 * 50.53715 * 22 11 10 26 26 O 1.42954 * 109.22452 * 307.69452 * 25 22 11 27 27 H 1.08997 * 109.46829 * 90.00065 * 1 2 3 28 28 H 1.08999 * 109.47098 * 330.00188 * 1 2 3 29 29 H 1.09003 * 109.47150 * 209.99984 * 1 2 3 30 30 H 1.08005 * 119.99769 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.00161 * 179.97438 * 4 3 2 32 32 H 1.07987 * 120.00306 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.99265 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.67949 * 291.94859 * 10 8 7 35 35 H 1.08995 * 109.68287 * 52.46363 * 10 8 7 36 36 H 0.96999 * 120.00140 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.47378 * 60.00449 * 24 22 11 38 38 H 1.09003 * 109.46780 * 180.02562 * 24 22 11 39 39 H 1.09000 * 109.47114 * 299.99735 * 24 22 11 40 40 H 1.09002 * 109.51466 * 67.62071 * 25 22 11 41 41 H 1.09005 * 109.51099 * 187.77173 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0020 6 6 3.5806 -1.1970 0.0024 7 6 2.1980 -1.1970 0.0058 8 6 1.4445 -2.5021 0.0115 9 1 0.5343 -2.3944 0.6014 10 6 1.0800 -2.8892 -1.4263 11 7 0.5152 -4.2479 -1.4122 12 6 -0.6575 -4.5181 -2.0188 13 8 -1.0665 -5.6631 -2.0702 14 6 -1.4395 -3.4343 -2.6158 15 1 -1.0225 -2.4402 -2.6814 16 6 -2.7284 -3.6864 -3.1021 17 7 -3.2328 -4.8892 -3.0234 18 14 -3.7260 -2.3033 -3.8647 19 1 -2.9995 -1.7584 -5.0397 20 1 -5.0464 -2.8265 -4.2988 21 1 -3.9252 -1.2258 -2.8625 22 6 1.2690 -5.3030 -0.7166 23 1 0.6567 -6.2015 -0.6395 24 6 2.5506 -5.6167 -1.4912 25 6 1.6243 -4.7983 0.6866 26 8 2.2653 -3.5250 0.5805 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 5.3516 -0.0001 0.0028 33 1 4.1206 -2.1323 0.0040 34 1 0.3426 -2.1891 -1.8192 35 1 1.9738 -2.8690 -2.0498 36 1 -4.1257 -5.0637 -3.3599 37 1 3.1641 -4.7183 -1.5577 38 1 3.1059 -6.3988 -0.9733 39 1 2.2946 -5.9571 -2.4946 40 1 0.7148 -4.6999 1.2793 41 1 2.2987 -5.5064 1.1682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153899590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:03 Heat of formation + Delta-G solvation = -55.242233 kcal Electronic energy + Delta-G solvation = -23839.285914 eV Core-core repulsion = 20491.045949 eV Total energy + Delta-G solvation = -3348.239965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02580 -38.64632 -36.65591 -33.77546 -33.39222 -32.47265 -32.14240 -30.49506 -27.62488 -26.58386 -26.26308 -25.68230 -23.49485 -21.95804 -21.10606 -20.24275 -18.51586 -17.00261 -16.28680 -16.18692 -16.00585 -15.04823 -14.94105 -14.75907 -14.31220 -14.09132 -13.99009 -13.46192 -13.27665 -12.98751 -12.70710 -12.63271 -12.16330 -12.08725 -11.91037 -11.73825 -11.64303 -11.23492 -11.08186 -11.04022 -10.92383 -10.83364 -10.68432 -10.30887 -10.11884 -9.89878 -9.45111 -8.90602 -8.67410 -8.49130 -7.64288 -7.25122 -6.26142 -4.71214 1.43558 1.52327 3.10652 3.16446 3.17501 3.80951 4.00188 4.02956 4.37832 4.49764 4.94700 4.98763 5.09886 5.17374 5.32441 5.34556 5.45320 5.52374 5.55549 5.66917 5.80262 5.83057 5.87349 5.91105 5.95352 6.02642 6.04767 6.15893 6.17470 6.26792 6.34844 6.45842 6.55891 6.58325 6.62481 6.73418 6.81885 7.12051 7.38568 7.48294 7.54336 8.05092 8.27416 8.95735 9.34691 10.50505 10.68764 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.006308 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.096394 B = 4437.727323 C = 5960.620059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.072 4.072 3 C -0.124 4.124 4 C -0.121 4.121 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.074 4.074 8 C 0.115 3.885 9 H 0.073 0.927 10 C 0.105 3.895 11 N -0.638 5.638 12 C 0.562 3.438 13 O -0.575 6.575 14 C -0.544 4.544 15 H 0.071 0.929 16 C 0.090 3.910 17 N -0.768 5.768 18 Si 0.904 3.096 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.267 1.267 22 C 0.108 3.892 23 H 0.098 0.902 24 C -0.150 4.150 25 C 0.057 3.943 26 O -0.380 6.380 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.270 0.730 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.638 9.776 6.486 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.107 4.107 7 C -0.075 4.075 8 C 0.056 3.944 9 H 0.090 0.910 10 C -0.020 4.020 11 N -0.377 5.377 12 C 0.368 3.632 13 O -0.458 6.458 14 C -0.581 4.581 15 H 0.089 0.911 16 C -0.131 4.131 17 N -0.396 5.396 18 Si 0.728 3.272 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.191 1.191 22 C 0.003 3.997 23 H 0.116 0.884 24 C -0.209 4.209 25 C -0.020 4.020 26 O -0.299 6.299 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.146 0.854 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.394 9.015 6.459 15.200 hybrid contribution -0.612 0.703 -0.472 1.045 sum 9.783 9.718 5.987 15.032 Atomic orbital electron populations 1.20949 0.90888 1.02968 1.03311 1.19725 0.96241 0.92241 0.98995 1.20933 0.94191 0.97168 1.01934 1.21079 0.94298 0.97854 1.00669 1.21101 0.99624 0.92554 1.01825 1.20997 0.93596 0.98254 0.97898 1.19478 0.93925 0.93017 1.01032 1.21356 0.92368 0.84970 0.95695 0.90958 1.21976 0.99110 0.86981 0.93939 1.48379 1.23632 1.06454 1.59239 1.18255 0.77709 0.89669 0.77556 1.90595 1.69519 1.22877 1.62765 1.20889 0.99963 0.95406 1.41800 0.91054 1.25700 0.97650 0.95751 0.93954 1.69986 1.14848 1.20270 1.34492 0.86487 0.79003 0.81613 0.80057 1.19184 1.20469 1.19140 1.21419 0.93315 0.93799 0.91209 0.88438 1.21989 0.97464 1.00767 1.00636 1.22976 0.97567 0.84771 0.96696 1.87800 1.40533 1.18798 1.82725 0.90258 0.91675 0.90830 0.86178 0.86480 0.86400 0.85417 0.88119 0.93143 0.91949 0.92695 0.92929 0.92663 0.93150 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.46 36.01 0.34 -1.29 16 2 C -0.07 -0.99 5.88 -104.62 -0.62 -1.61 16 3 C -0.12 -1.50 9.70 -39.59 -0.38 -1.88 16 4 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 5 C -0.13 -1.59 10.05 -39.58 -0.40 -1.98 16 6 C -0.09 -1.25 9.35 -39.58 -0.37 -1.62 16 7 C -0.07 -1.11 5.07 -104.63 -0.53 -1.64 16 8 C 0.11 1.93 2.49 -27.73 -0.07 1.86 16 9 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 10 C 0.10 2.01 5.43 -3.53 -0.02 2.00 16 11 N -0.64 -14.43 2.71 -166.39 -0.45 -14.88 16 12 C 0.56 15.71 7.62 -12.99 -0.10 15.61 16 13 O -0.58 -18.30 14.56 5.20 0.08 -18.22 16 14 C -0.54 -14.86 8.86 -35.63 -0.32 -15.17 16 15 H 0.07 1.77 5.73 -52.49 -0.30 1.47 16 16 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 17 N -0.77 -22.53 11.86 55.55 0.66 -21.87 16 18 Si 0.90 19.59 29.56 -169.99 -5.02 14.57 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 C 0.11 2.10 3.22 -67.42 -0.22 1.89 16 23 H 0.10 2.12 7.12 -51.93 -0.37 1.75 16 24 C -0.15 -2.57 9.24 37.16 0.34 -2.22 16 25 C 0.06 0.94 6.36 37.31 0.24 1.18 16 26 O -0.38 -6.36 8.85 -35.23 -0.31 -6.67 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.07 1.03 6.02 -51.93 -0.31 0.72 16 30 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.77 7.35 -52.48 -0.39 1.38 16 34 H 0.10 2.00 5.26 -51.93 -0.27 1.73 16 35 H 0.05 0.95 7.66 -51.93 -0.40 0.56 16 36 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16 37 H 0.05 0.92 7.23 -51.93 -0.38 0.54 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -32.85 330.92 -8.33 -41.17 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -5.67 Total: 5.22 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.59 Total: -4.31 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.21 Total: -36.75 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.24 Total: -24.89 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.85 -8.33 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153899590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.069 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds