Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 120.00176 * 2 1 4 4 C 1.38205 * 120.00132 * 179.97438 * 3 2 1 5 5 C 1.38264 * 120.00345 * 359.95528 * 4 3 2 6 6 C 1.38215 * 119.99242 * 0.02562 * 5 4 3 7 7 C 1.38221 * 119.99752 * 179.72370 * 2 1 3 8 8 C 1.50694 * 120.00116 * 0.02562 * 7 2 1 9 9 H 1.09001 * 109.51312 * 324.89761 * 8 7 2 10 10 C 1.53297 * 109.51298 * 85.00076 * 8 7 2 11 11 N 1.47156 * 108.38713 * 172.22763 * 10 8 7 12 12 C 1.34768 * 120.98378 * 129.48504 * 11 10 8 13 13 O 1.21688 * 120.00216 * 175.30497 * 12 11 10 14 14 C 1.46372 * 120.00233 * 355.30237 * 12 11 10 15 15 H 1.08001 * 120.00084 * 7.70037 * 14 12 11 16 16 C 1.40048 * 120.00168 * 187.69743 * 14 12 11 17 17 N 1.30668 * 120.00138 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99828 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47518 * 59.99968 * 18 16 14 20 20 H 1.48504 * 109.46951 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47198 * 299.99584 * 18 16 14 22 22 C 1.47151 * 118.03138 * 309.46126 * 11 10 8 23 23 H 1.09000 * 109.67771 * 170.25507 * 22 11 10 24 24 C 1.52999 * 109.68293 * 290.81473 * 22 11 10 25 25 C 1.53296 * 108.38295 * 50.53715 * 22 11 10 26 26 O 1.42954 * 109.22452 * 307.69452 * 25 22 11 27 27 H 1.08997 * 109.46829 * 90.00065 * 1 2 3 28 28 H 1.08999 * 109.47098 * 330.00188 * 1 2 3 29 29 H 1.09003 * 109.47150 * 209.99984 * 1 2 3 30 30 H 1.08005 * 119.99769 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.00161 * 179.97438 * 4 3 2 32 32 H 1.07987 * 120.00306 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.99265 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.67949 * 291.94859 * 10 8 7 35 35 H 1.08995 * 109.68287 * 52.46363 * 10 8 7 36 36 H 0.96999 * 120.00140 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.47378 * 60.00449 * 24 22 11 38 38 H 1.09003 * 109.46780 * 180.02562 * 24 22 11 39 39 H 1.09000 * 109.47114 * 299.99735 * 24 22 11 40 40 H 1.09002 * 109.51466 * 67.62071 * 25 22 11 41 41 H 1.09005 * 109.51099 * 187.77173 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0001 0.0020 6 6 3.5806 -1.1970 0.0024 7 6 2.1980 -1.1970 0.0058 8 6 1.4445 -2.5021 0.0115 9 1 0.5343 -2.3944 0.6014 10 6 1.0800 -2.8892 -1.4263 11 7 0.5152 -4.2479 -1.4122 12 6 -0.6575 -4.5181 -2.0188 13 8 -1.0665 -5.6631 -2.0702 14 6 -1.4395 -3.4343 -2.6158 15 1 -1.0225 -2.4402 -2.6814 16 6 -2.7284 -3.6864 -3.1021 17 7 -3.2328 -4.8892 -3.0234 18 14 -3.7260 -2.3033 -3.8647 19 1 -2.9995 -1.7584 -5.0397 20 1 -5.0464 -2.8265 -4.2988 21 1 -3.9252 -1.2258 -2.8625 22 6 1.2690 -5.3030 -0.7166 23 1 0.6567 -6.2015 -0.6395 24 6 2.5506 -5.6167 -1.4912 25 6 1.6243 -4.7983 0.6866 26 8 2.2653 -3.5250 0.5805 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5138 29 1 -0.3633 -0.8900 0.5138 30 1 1.6583 2.1326 -0.0004 31 1 4.1204 2.1325 0.0001 32 1 5.3516 -0.0001 0.0028 33 1 4.1206 -2.1323 0.0040 34 1 0.3426 -2.1891 -1.8192 35 1 1.9738 -2.8690 -2.0498 36 1 -4.1257 -5.0637 -3.3599 37 1 3.1641 -4.7183 -1.5577 38 1 3.1059 -6.3988 -0.9733 39 1 2.2946 -5.9571 -2.4946 40 1 0.7148 -4.6999 1.2793 41 1 2.2987 -5.5064 1.1682 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153899590.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = -75.420512 kcal Electronic energy + Delta-G solvation = -23840.160910 eV Core-core repulsion = 20491.045949 eV Total energy + Delta-G solvation = -3349.114961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36523 -39.95351 -38.49813 -35.52406 -34.74624 -34.43484 -33.30991 -31.81151 -29.06965 -28.22285 -27.65905 -27.14787 -24.86819 -23.35360 -22.47816 -21.44080 -20.22002 -18.72375 -17.98531 -17.51520 -17.43767 -16.70587 -16.33645 -16.05640 -15.88265 -15.38013 -15.14368 -15.06120 -14.69033 -14.38990 -14.17763 -13.89780 -13.58051 -13.41371 -13.37428 -13.13269 -13.04392 -12.77228 -12.74153 -12.66977 -12.35363 -12.13728 -12.08861 -11.90116 -11.73018 -11.32433 -10.98365 -10.90571 -9.87743 -9.65854 -9.50283 -9.04955 -8.32177 -6.87304 0.43938 0.55745 1.37621 1.40802 1.52224 2.19740 2.42497 2.55286 2.73054 2.91661 3.54390 3.82291 3.84960 3.93968 4.00590 4.07943 4.17405 4.25722 4.30766 4.36893 4.48499 4.52584 4.62510 4.64280 4.76568 4.80279 4.82547 4.87684 4.93529 5.00834 5.01728 5.20362 5.26813 5.33487 5.35405 5.61047 5.66499 5.67995 5.76727 6.06066 6.14866 6.19847 6.33189 6.84685 7.33764 8.41456 8.63342 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014526 B = 0.006308 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.096394 B = 4437.727323 C = 5960.620059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.133 4.133 6 C -0.102 4.102 7 C -0.097 4.097 8 C 0.126 3.874 9 H 0.060 0.940 10 C 0.108 3.892 11 N -0.642 5.642 12 C 0.544 3.456 13 O -0.629 6.629 14 C -0.567 4.567 15 H 0.090 0.910 16 C 0.033 3.967 17 N -0.821 5.821 18 Si 0.989 3.011 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.248 1.248 22 C 0.098 3.902 23 H 0.067 0.933 24 C -0.138 4.138 25 C 0.066 3.934 26 O -0.374 6.374 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.145 0.855 31 H 0.150 0.850 32 H 0.144 0.856 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.275 0.725 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.030 0.970 40 H 0.040 0.960 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.309 12.996 6.948 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.133 4.133 5 C -0.150 4.150 6 C -0.120 4.120 7 C -0.097 4.097 8 C 0.068 3.932 9 H 0.078 0.922 10 C -0.015 4.015 11 N -0.379 5.379 12 C 0.351 3.649 13 O -0.516 6.516 14 C -0.603 4.603 15 H 0.108 0.892 16 C -0.182 4.182 17 N -0.450 5.450 18 Si 0.808 3.192 19 H -0.180 1.180 20 H -0.199 1.199 21 H -0.172 1.172 22 C -0.006 4.006 23 H 0.085 0.915 24 C -0.196 4.196 25 C -0.012 4.012 26 O -0.293 6.293 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.142 0.858 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.059 0.941 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.129 12.265 6.952 18.598 hybrid contribution -1.025 -0.289 -0.577 1.211 sum 11.104 11.976 6.375 17.532 Atomic orbital electron populations 1.20931 0.90980 1.03230 1.02870 1.19874 0.96436 0.92652 0.99535 1.21258 0.94871 0.97297 1.00908 1.21500 0.94154 0.98975 0.98639 1.21421 1.01018 0.91960 1.00636 1.21079 0.93119 0.99211 0.98558 1.19396 0.94532 0.92203 1.03602 1.21158 0.92526 0.86152 0.93403 0.92232 1.22046 0.98519 0.84875 0.96108 1.48226 1.22705 1.08619 1.58316 1.18647 0.79185 0.89227 0.77862 1.90539 1.71471 1.24663 1.64908 1.21387 1.00741 0.96151 1.42044 0.89175 1.26929 0.98745 0.98735 0.93838 1.70163 1.15624 1.23353 1.35909 0.85199 0.76870 0.77726 0.79419 1.17998 1.19905 1.17160 1.21662 0.93504 0.92097 0.93370 0.91473 1.21883 0.96365 1.02112 0.99262 1.22985 0.98315 0.85426 0.94440 1.87820 1.40360 1.18680 1.82404 0.91026 0.89354 0.92642 0.83757 0.83246 0.83832 0.85773 0.89135 0.92733 0.91549 0.91966 0.89444 0.95090 0.94125 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.46 71.24 0.67 -2.46 16 2 C -0.08 -2.21 5.88 -19.86 -0.12 -2.32 16 3 C -0.13 -2.61 9.70 22.27 0.22 -2.39 16 4 C -0.11 -2.13 10.05 22.27 0.22 -1.90 16 5 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 6 C -0.10 -2.63 9.35 22.27 0.21 -2.43 16 7 C -0.10 -2.82 5.07 -19.87 -0.10 -2.92 16 8 C 0.13 4.26 2.49 29.95 0.07 4.34 16 9 H 0.06 2.16 6.17 -2.39 -0.01 2.14 16 10 C 0.11 4.25 5.43 86.35 0.47 4.72 16 11 N -0.64 -30.22 2.71 -798.58 -2.17 -32.38 16 12 C 0.54 32.04 7.62 86.36 0.66 32.69 16 13 O -0.63 -42.56 14.56 -4.31 -0.06 -42.62 16 14 C -0.57 -31.97 8.86 24.83 0.22 -31.75 16 15 H 0.09 4.56 5.73 -2.91 -0.02 4.54 16 16 C 0.03 1.82 5.50 85.31 0.47 2.29 16 17 N -0.82 -50.17 11.86 21.84 0.26 -49.91 16 18 Si 0.99 40.40 29.56 68.60 2.03 42.42 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 21 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 22 C 0.10 3.94 3.22 44.97 0.14 4.08 16 23 H 0.07 3.10 7.12 -2.39 -0.02 3.09 16 24 C -0.14 -4.69 9.24 71.98 0.67 -4.03 16 25 C 0.07 2.13 6.36 72.08 0.46 2.59 16 26 O -0.37 -12.22 8.85 -148.98 -1.32 -13.54 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 29 H 0.05 1.58 6.02 -2.39 -0.01 1.57 16 30 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.14 2.16 8.06 -2.92 -0.02 2.13 16 33 H 0.12 3.23 7.35 -2.91 -0.02 3.20 16 34 H 0.09 3.70 5.26 -2.39 -0.01 3.69 16 35 H 0.05 2.08 7.66 -2.39 -0.02 2.06 16 36 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 37 H 0.06 2.01 7.23 -2.39 -0.02 2.00 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.13 3.30 8.14 -2.38 -0.02 3.28 16 Total: -1.00 -75.60 330.92 4.26 -71.34 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 1.03 Total: 26.67 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 4.49 Total: -1.98 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -1.91 Total: -82.30 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -1.38 Total: -56.16 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Total: -75.60 4.26 -71.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153899590.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.084 kcal (2) G-P(sol) polarization free energy of solvation -75.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds