Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38283 * 119.97737 * 2 1 4 4 C 1.38237 * 120.11253 * 180.27173 * 3 2 1 5 5 C 1.38166 * 120.06002 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.02965 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46843 * 260.02273 * 6 5 4 8 8 C 1.34781 * 119.99943 * 180.02562 * 7 6 5 9 9 O 1.21685 * 119.99790 * 359.97438 * 8 7 6 10 10 C 1.46371 * 119.99799 * 179.97438 * 8 7 6 11 11 H 1.07992 * 120.00551 * 353.93852 * 10 8 7 12 12 C 1.40058 * 119.99665 * 173.93778 * 10 8 7 13 13 N 1.30662 * 119.99792 * 6.14800 * 12 10 8 14 14 Si 1.86803 * 119.99874 * 186.15139 * 12 10 8 15 15 H 1.48494 * 109.47078 * 94.98265 * 14 12 10 16 16 H 1.48500 * 109.46925 * 214.98491 * 14 12 10 17 17 H 1.48503 * 109.46772 * 334.98231 * 14 12 10 18 18 C 1.38708 * 119.94074 * 359.97438 * 5 4 3 19 19 O 1.35895 * 120.05509 * 180.02562 * 18 5 4 20 20 C 1.42908 * 117.00266 * 179.97438 * 19 18 5 21 21 C 1.52996 * 109.47317 * 180.02562 * 20 19 18 22 22 C 1.52995 * 117.49738 * 243.62376 * 21 20 19 23 23 C 1.52996 * 117.50064 * 175.00025 * 21 20 19 24 24 C 1.38125 * 119.96651 * 180.28285 * 2 1 3 25 25 H 1.08997 * 109.47264 * 269.72092 * 1 2 3 26 26 H 1.09005 * 109.46751 * 29.72366 * 1 2 3 27 27 H 1.08999 * 109.47283 * 149.71984 * 1 2 3 28 28 H 1.08004 * 119.93649 * 0.28221 * 3 2 1 29 29 H 1.08004 * 119.96813 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47035 * 20.01917 * 6 5 4 31 31 H 1.08996 * 109.47277 * 140.02314 * 6 5 4 32 32 H 0.97003 * 119.99864 * 359.97438 * 7 6 5 33 33 H 0.97009 * 120.00314 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.46751 * 300.00382 * 20 19 18 35 35 H 1.09001 * 109.46495 * 59.99977 * 20 19 18 36 36 H 1.08999 * 115.55041 * 29.32864 * 21 20 19 37 37 H 1.08997 * 117.50330 * 359.97438 * 22 21 20 38 38 H 1.09002 * 117.50238 * 145.01923 * 22 21 20 39 39 H 1.08990 * 117.50086 * 214.97722 * 23 21 20 40 40 H 1.08999 * 117.49654 * 0.02562 * 23 21 20 41 41 H 1.07998 * 120.03606 * 359.74282 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5803 1.2011 -0.0057 5 6 4.2752 0.0069 -0.0119 6 6 5.7822 0.0113 -0.0187 7 7 6.2650 -0.2231 -1.3818 8 6 7.5891 -0.2618 -1.6304 9 8 8.3835 -0.1016 -0.7226 10 6 8.0715 -0.4965 -2.9922 11 1 7.3718 -0.7357 -3.7793 12 6 9.4406 -0.4110 -3.2746 13 7 10.2985 -0.2410 -2.3038 14 14 10.0402 -0.5397 -5.0391 15 1 10.1985 0.8225 -5.6087 16 1 11.3477 -1.2432 -5.0675 17 1 9.0509 -1.3009 -5.8437 18 6 3.5845 -1.1960 -0.0119 19 8 4.2656 -2.3719 -0.0175 20 6 3.4890 -3.5715 -0.0166 21 6 4.4227 -4.7835 -0.0227 22 6 4.3712 -5.7088 -1.2401 23 6 3.7834 -6.1685 0.0956 24 6 2.1969 -1.1966 -0.0059 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3633 0.8925 -0.5096 27 1 -0.3634 -0.8874 -0.5182 28 1 1.6565 2.1324 0.0046 29 1 4.1176 2.1380 -0.0052 30 1 6.1442 0.9769 0.3340 31 1 6.1507 -0.7768 0.6379 32 1 5.6317 -0.3511 -2.1053 33 1 11.2469 -0.1821 -2.4993 34 1 2.8642 -3.5991 0.8762 35 1 2.8563 -3.5953 -0.9038 36 1 5.3908 -4.6336 0.4553 37 1 3.6718 -5.4543 -2.0365 38 1 5.3055 -6.1677 -1.5634 39 1 4.3310 -6.9298 0.6510 40 1 2.6975 -6.2162 0.1773 41 1 1.6570 -2.1319 -0.0063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153970148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = -37.337680 kcal Electronic energy + Delta-G solvation = -22448.101433 eV Core-core repulsion = 19100.637867 eV Total energy + Delta-G solvation = -3347.463565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26273 -38.12863 -37.04190 -36.64361 -34.06697 -32.42939 -31.53202 -30.01433 -28.28533 -27.55094 -26.02922 -23.73280 -22.54588 -22.40316 -21.19566 -20.27017 -19.52452 -17.69594 -17.17545 -16.26089 -15.87759 -15.51295 -15.14309 -15.09346 -14.41865 -14.08961 -13.96812 -13.87948 -13.66912 -13.16107 -13.12431 -12.53820 -12.36259 -12.19069 -12.00395 -11.67115 -11.47069 -11.40096 -11.16955 -11.08937 -10.98245 -10.76404 -10.64412 -10.51635 -10.33051 -10.14600 -10.03144 -8.77323 -8.69542 -8.03257 -7.44688 -7.33322 -6.10440 -4.53765 1.37866 1.56041 3.14967 3.18750 3.25547 3.29436 3.72484 3.79544 4.19163 4.59160 4.68241 4.71825 4.75021 4.85095 4.88791 5.02256 5.13208 5.19252 5.26006 5.33256 5.39930 5.41816 5.46666 5.47475 5.64592 5.71542 5.77099 5.79055 5.87175 5.97600 6.10645 6.13206 6.20820 6.44645 6.57833 6.63582 6.83711 6.96208 7.52032 7.58350 8.05693 8.22620 8.44548 9.11372 9.67309 10.69576 10.89441 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.004707 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.857639 B = 5946.959549 C = 7517.531915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.054 4.054 3 C -0.162 4.162 4 C -0.064 4.064 5 C -0.125 4.125 6 C 0.182 3.818 7 N -0.757 5.757 8 C 0.557 3.443 9 O -0.583 6.583 10 C -0.545 4.545 11 H 0.066 0.934 12 C 0.089 3.911 13 N -0.769 5.769 14 Si 0.905 3.095 15 H -0.273 1.273 16 H -0.280 1.280 17 H -0.265 1.265 18 C 0.149 3.851 19 O -0.295 6.295 20 C 0.093 3.907 21 C -0.155 4.155 22 C -0.173 4.173 23 C -0.173 4.173 24 C -0.216 4.216 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.130 0.870 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.379 0.621 33 H 0.267 0.733 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.429 -5.358 3.654 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.180 4.180 4 C -0.082 4.082 5 C -0.126 4.126 6 C 0.057 3.943 7 N -0.412 5.412 8 C 0.361 3.639 9 O -0.466 6.466 10 C -0.582 4.582 11 H 0.085 0.915 12 C -0.131 4.131 13 N -0.398 5.398 14 Si 0.730 3.270 15 H -0.199 1.199 16 H -0.205 1.205 17 H -0.189 1.189 18 C 0.103 3.897 19 O -0.207 6.207 20 C 0.017 3.983 21 C -0.173 4.173 22 C -0.210 4.210 23 C -0.210 4.210 24 C -0.234 4.234 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.139 0.861 29 H 0.148 0.852 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.210 0.790 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.415 -5.273 4.404 19.655 hybrid contribution -0.267 -0.203 -1.220 1.266 sum -18.682 -5.476 3.184 19.727 Atomic orbital electron populations 1.20779 0.91358 1.02625 1.02153 1.19627 0.95667 0.92601 0.97552 1.20871 0.94046 0.97288 1.05836 1.20962 0.93768 0.97126 0.96359 1.19600 0.96910 0.90296 1.05812 1.19583 0.86128 1.00626 0.87960 1.46103 1.08261 1.80218 1.06634 1.18197 0.79065 0.76628 0.89998 1.90588 1.54133 1.54880 1.46988 1.20876 0.92500 1.51198 0.93617 0.91543 1.25686 0.96629 0.92779 0.97972 1.70035 1.02261 1.35409 1.32121 0.86401 0.78503 0.78755 0.83319 1.19853 1.20513 1.18947 1.18837 0.89994 0.85793 0.95120 1.86231 1.34883 1.11718 1.87904 1.22251 0.92891 0.82306 1.00809 1.22095 1.01753 0.89338 1.04090 1.23079 1.03272 1.03198 0.91420 1.22971 1.00450 0.96429 1.01120 1.21023 0.92723 0.98651 1.11050 0.91244 0.91459 0.91791 0.86142 0.85189 0.92805 0.92358 0.78994 0.92251 0.91992 0.92121 0.86281 0.88622 0.88223 0.88289 0.88808 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 2 C -0.05 -0.65 5.88 -104.65 -0.62 -1.26 16 3 C -0.16 -2.02 9.70 -39.56 -0.38 -2.40 16 4 C -0.06 -0.93 9.66 -39.61 -0.38 -1.31 16 5 C -0.13 -2.14 5.26 -104.47 -0.55 -2.69 16 6 C 0.18 3.85 5.46 -5.19 -0.03 3.82 16 7 N -0.76 -18.25 5.54 -62.91 -0.35 -18.60 16 8 C 0.56 16.60 7.74 -12.99 -0.10 16.50 16 9 O -0.58 -19.60 15.05 5.20 0.08 -19.53 16 10 C -0.54 -15.99 9.54 -35.63 -0.34 -16.33 16 11 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 12 C 0.09 2.55 5.49 -17.37 -0.10 2.45 16 13 N -0.77 -23.70 11.85 55.55 0.66 -23.04 16 14 Si 0.91 20.69 29.56 -169.99 -5.03 15.67 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 18 C 0.15 2.38 6.66 -39.22 -0.26 2.11 16 19 O -0.29 -4.92 9.37 -19.41 -0.18 -5.10 16 20 C 0.09 1.15 5.02 37.16 0.19 1.34 16 21 C -0.15 -1.88 6.06 -90.63 -0.55 -2.43 16 22 C -0.17 -1.88 10.18 -26.73 -0.27 -2.15 16 23 C -0.17 -1.59 10.25 -26.73 -0.27 -1.87 16 24 C -0.22 -2.82 8.69 -39.43 -0.34 -3.16 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 29 H 0.13 1.75 8.04 -52.48 -0.42 1.33 16 30 H 0.05 1.16 8.00 -51.93 -0.42 0.75 16 31 H 0.06 1.34 7.85 -51.93 -0.41 0.94 16 32 H 0.38 8.40 8.44 -40.82 -0.34 8.05 16 33 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 34 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.06 0.68 7.40 -51.93 -0.38 0.30 16 36 H 0.12 1.66 8.14 -51.93 -0.42 1.23 16 37 H 0.10 0.97 8.03 -51.93 -0.42 0.55 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.12 1.33 6.30 -52.49 -0.33 1.00 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -35.75 351.11 -9.22 -44.97 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.04 Total: 8.31 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -3.65 Total: -7.97 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.31 Total: -41.64 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.10 Total: -24.63 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.75 -9.22 -44.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153970148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.629 kcal (2) G-P(sol) polarization free energy of solvation -35.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds