Wall clock time and date at job start Tue Mar 31 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38283 * 119.97737 * 2 1 4 4 C 1.38237 * 120.11253 * 180.27173 * 3 2 1 5 5 C 1.38166 * 120.06002 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.02965 * 179.97438 * 5 4 3 7 7 N 1.46501 * 109.46843 * 260.02273 * 6 5 4 8 8 C 1.34781 * 119.99943 * 180.02562 * 7 6 5 9 9 O 1.21685 * 119.99790 * 359.97438 * 8 7 6 10 10 C 1.46371 * 119.99799 * 179.97438 * 8 7 6 11 11 H 1.07992 * 120.00551 * 353.93852 * 10 8 7 12 12 C 1.40058 * 119.99665 * 173.93778 * 10 8 7 13 13 N 1.30662 * 119.99792 * 6.14800 * 12 10 8 14 14 Si 1.86803 * 119.99874 * 186.15139 * 12 10 8 15 15 H 1.48494 * 109.47078 * 94.98265 * 14 12 10 16 16 H 1.48500 * 109.46925 * 214.98491 * 14 12 10 17 17 H 1.48503 * 109.46772 * 334.98231 * 14 12 10 18 18 C 1.38708 * 119.94074 * 359.97438 * 5 4 3 19 19 O 1.35895 * 120.05509 * 180.02562 * 18 5 4 20 20 C 1.42908 * 117.00266 * 179.97438 * 19 18 5 21 21 C 1.52996 * 109.47317 * 180.02562 * 20 19 18 22 22 C 1.52995 * 117.49738 * 243.62376 * 21 20 19 23 23 C 1.52996 * 117.50064 * 175.00025 * 21 20 19 24 24 C 1.38125 * 119.96651 * 180.28285 * 2 1 3 25 25 H 1.08997 * 109.47264 * 269.72092 * 1 2 3 26 26 H 1.09005 * 109.46751 * 29.72366 * 1 2 3 27 27 H 1.08999 * 109.47283 * 149.71984 * 1 2 3 28 28 H 1.08004 * 119.93649 * 0.28221 * 3 2 1 29 29 H 1.08004 * 119.96813 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47035 * 20.01917 * 6 5 4 31 31 H 1.08996 * 109.47277 * 140.02314 * 6 5 4 32 32 H 0.97003 * 119.99864 * 359.97438 * 7 6 5 33 33 H 0.97009 * 120.00314 * 179.97438 * 13 12 10 34 34 H 1.09003 * 109.46751 * 300.00382 * 20 19 18 35 35 H 1.09001 * 109.46495 * 59.99977 * 20 19 18 36 36 H 1.08999 * 115.55041 * 29.32864 * 21 20 19 37 37 H 1.08997 * 117.50330 * 359.97438 * 22 21 20 38 38 H 1.09002 * 117.50238 * 145.01923 * 22 21 20 39 39 H 1.08990 * 117.50086 * 214.97722 * 23 21 20 40 40 H 1.08999 * 117.49654 * 0.02562 * 23 21 20 41 41 H 1.07998 * 120.03606 * 359.74282 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1978 0.0000 4 6 3.5803 1.2011 -0.0057 5 6 4.2752 0.0069 -0.0119 6 6 5.7822 0.0113 -0.0187 7 7 6.2650 -0.2231 -1.3818 8 6 7.5891 -0.2618 -1.6304 9 8 8.3835 -0.1016 -0.7226 10 6 8.0715 -0.4965 -2.9922 11 1 7.3718 -0.7357 -3.7793 12 6 9.4406 -0.4110 -3.2746 13 7 10.2985 -0.2410 -2.3038 14 14 10.0402 -0.5397 -5.0391 15 1 10.1985 0.8225 -5.6087 16 1 11.3477 -1.2432 -5.0675 17 1 9.0509 -1.3009 -5.8437 18 6 3.5845 -1.1960 -0.0119 19 8 4.2656 -2.3719 -0.0175 20 6 3.4890 -3.5715 -0.0166 21 6 4.4227 -4.7835 -0.0227 22 6 4.3712 -5.7088 -1.2401 23 6 3.7834 -6.1685 0.0956 24 6 2.1969 -1.1966 -0.0059 25 1 -0.3633 -0.0050 1.0276 26 1 -0.3633 0.8925 -0.5096 27 1 -0.3634 -0.8874 -0.5182 28 1 1.6565 2.1324 0.0046 29 1 4.1176 2.1380 -0.0052 30 1 6.1442 0.9769 0.3340 31 1 6.1507 -0.7768 0.6379 32 1 5.6317 -0.3511 -2.1053 33 1 11.2469 -0.1821 -2.4993 34 1 2.8642 -3.5991 0.8762 35 1 2.8563 -3.5953 -0.9038 36 1 5.3908 -4.6336 0.4553 37 1 3.6718 -5.4543 -2.0365 38 1 5.3055 -6.1677 -1.5634 39 1 4.3310 -6.9298 0.6510 40 1 2.6975 -6.2162 0.1773 41 1 1.6570 -2.1319 -0.0063 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153970148.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:11 Heat of formation + Delta-G solvation = -60.945840 kcal Electronic energy + Delta-G solvation = -22449.125159 eV Core-core repulsion = 19100.637867 eV Total energy + Delta-G solvation = -3348.487292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39965 -39.41220 -38.95153 -37.60998 -35.74798 -34.57264 -33.14882 -31.08345 -29.67436 -28.71831 -27.84683 -25.18738 -23.52401 -23.28166 -22.30823 -21.71112 -21.26649 -19.40248 -18.61548 -17.52776 -17.34746 -16.98320 -16.61271 -16.25183 -15.91827 -15.63007 -15.34900 -15.15332 -14.79992 -14.48456 -14.32316 -14.07311 -13.66724 -13.42112 -13.26940 -13.06036 -12.88671 -12.68058 -12.62600 -12.44153 -12.40168 -12.24395 -12.01936 -11.99768 -11.70078 -11.43169 -10.93868 -10.91387 -10.01823 -9.66731 -9.47603 -9.07085 -8.29389 -6.85839 0.26976 0.47928 1.38560 1.40712 1.56564 2.14684 2.24731 2.46689 2.67374 2.85564 3.36370 3.59321 3.66634 3.73652 3.85733 3.87732 4.01874 4.03960 4.16686 4.21814 4.31384 4.42796 4.53095 4.60273 4.68481 4.72604 4.77344 4.85334 4.88855 4.94423 4.96806 5.15717 5.19935 5.27027 5.30921 5.34669 5.53369 5.63973 5.86818 5.91170 6.19831 6.26677 6.51107 6.85676 7.54001 8.48442 8.66951 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.011933 B = 0.004707 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.857639 B = 5946.959549 C = 7517.531915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.044 4.044 3 C -0.159 4.159 4 C -0.068 4.068 5 C -0.157 4.157 6 C 0.192 3.808 7 N -0.743 5.743 8 C 0.538 3.462 9 O -0.635 6.635 10 C -0.574 4.574 11 H 0.084 0.916 12 C 0.029 3.971 13 N -0.822 5.822 14 Si 1.000 3.000 15 H -0.261 1.261 16 H -0.270 1.270 17 H -0.249 1.249 18 C 0.135 3.865 19 O -0.332 6.332 20 C 0.091 3.909 21 C -0.185 4.185 22 C -0.182 4.182 23 C -0.141 4.141 24 C -0.214 4.214 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.133 0.867 30 H 0.040 0.960 31 H 0.027 0.973 32 H 0.389 0.611 33 H 0.275 0.725 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.119 0.881 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.840 -5.848 1.920 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.044 4.044 3 C -0.177 4.177 4 C -0.086 4.086 5 C -0.158 4.158 6 C 0.068 3.932 7 N -0.396 5.396 8 C 0.343 3.657 9 O -0.523 6.523 10 C -0.610 4.610 11 H 0.102 0.898 12 C -0.186 4.186 13 N -0.452 5.452 14 Si 0.819 3.181 15 H -0.185 1.185 16 H -0.195 1.195 17 H -0.173 1.173 18 C 0.089 3.911 19 O -0.245 6.245 20 C 0.017 3.983 21 C -0.203 4.203 22 C -0.218 4.218 23 C -0.178 4.178 24 C -0.232 4.232 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.169 0.831 29 H 0.150 0.850 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.222 0.778 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.137 0.863 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -21.897 -5.768 2.672 22.802 hybrid contribution 0.693 -0.065 -0.597 0.917 sum -21.204 -5.833 2.076 22.090 Atomic orbital electron populations 1.20875 0.88200 1.04107 1.03576 1.20145 0.97848 0.91759 0.94680 1.21210 0.92911 0.99061 1.04545 1.21073 0.95107 0.96222 0.96242 1.19304 0.93983 0.92359 1.10131 1.19420 0.89721 0.98486 0.85598 1.45809 1.06867 1.78655 1.08311 1.18654 0.80443 0.76463 0.90160 1.90534 1.55992 1.57361 1.48384 1.21386 0.93916 1.51862 0.93843 0.89807 1.27004 0.96289 0.91274 1.04018 1.70202 1.03103 1.36139 1.35729 0.84982 0.78158 0.79472 0.75481 1.18523 1.19505 1.17252 1.19003 0.91290 0.85087 0.95689 1.86195 1.37064 1.13097 1.88189 1.22471 0.92835 0.80689 1.02320 1.22094 1.01272 0.91153 1.05807 1.23165 1.03565 1.02974 0.92138 1.23087 1.01791 0.93887 0.99022 1.21303 0.91294 1.00461 1.10149 0.89645 0.89961 0.90451 0.83080 0.84951 0.94146 0.95465 0.77791 0.91516 0.90085 0.90604 0.89444 0.87609 0.89027 0.87397 0.86286 0.83311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 71.24 0.71 -0.64 16 2 C -0.04 -0.90 5.88 -19.88 -0.12 -1.02 16 3 C -0.16 -3.55 9.70 22.28 0.22 -3.33 16 4 C -0.07 -1.97 9.66 22.25 0.22 -1.75 16 5 C -0.16 -5.56 5.26 -19.77 -0.10 -5.67 16 6 C 0.19 8.81 5.46 85.63 0.47 9.28 16 7 N -0.74 -37.96 5.54 -471.16 -2.61 -40.57 16 8 C 0.54 33.87 7.74 86.36 0.67 34.53 16 9 O -0.63 -45.58 15.05 -4.30 -0.06 -45.64 16 10 C -0.57 -34.59 9.54 24.83 0.24 -34.36 16 11 H 0.08 4.59 7.85 -2.91 -0.02 4.57 16 12 C 0.03 1.69 5.49 85.31 0.47 2.16 16 13 N -0.82 -52.45 11.85 21.84 0.26 -52.19 16 14 Si 1.00 42.59 29.56 68.60 2.03 44.62 16 15 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 16 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 18 C 0.14 4.35 6.66 22.51 0.15 4.50 16 19 O -0.33 -11.53 9.37 -92.37 -0.87 -12.40 16 20 C 0.09 2.23 5.02 71.98 0.36 2.59 16 21 C -0.18 -4.60 6.06 -10.80 -0.07 -4.67 16 22 C -0.18 -3.87 10.18 30.59 0.31 -3.56 16 23 C -0.14 -2.37 10.25 30.59 0.31 -2.05 16 24 C -0.21 -5.09 8.69 22.37 0.19 -4.90 16 25 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.08 0.81 8.08 -2.38 -0.02 0.79 16 27 H 0.08 0.78 8.08 -2.39 -0.02 0.77 16 28 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 29 H 0.13 3.63 8.04 -2.91 -0.02 3.61 16 30 H 0.04 1.91 8.00 -2.39 -0.02 1.89 16 31 H 0.03 1.39 7.85 -2.39 -0.02 1.37 16 32 H 0.39 18.01 8.44 -92.71 -0.78 17.23 16 33 H 0.27 15.77 8.29 -92.70 -0.77 15.01 16 34 H 0.08 1.60 7.66 -2.39 -0.02 1.58 16 35 H 0.08 1.57 7.40 -2.39 -0.02 1.55 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.11 2.01 8.03 -2.39 -0.02 1.99 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.15 2.70 6.30 -2.91 -0.02 2.68 16 Total: -1.00 -83.41 351.11 3.03 -80.38 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.25 Total: 34.68 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 4.03 Total: -8.88 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -2.35 Total: -92.76 kcal Atomic # 8 Polarization: -57.11 SS G_CDS: -0.93 Total: -58.04 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -83.41 3.03 -80.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153970148.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.434 kcal (2) G-P(sol) polarization free energy of solvation -83.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds