Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38542 * 119.84824 * 2 1 4 4 C 1.38063 * 120.38687 * 179.74054 * 3 2 1 5 5 C 1.38699 * 120.08406 * 0.56067 * 4 3 2 6 6 O 1.35658 * 120.14810 * 179.71860 * 5 4 3 7 7 C 1.40138 * 119.70227 * 359.44219 * 5 4 3 8 8 C 1.47536 * 120.19510 * 180.25221 * 7 5 4 9 9 O 1.21582 * 119.99926 * 325.51078 * 8 7 5 10 10 N 1.34777 * 119.99913 * 145.50859 * 8 7 5 11 11 C 1.46505 * 119.99972 * 6.61962 * 10 8 7 12 12 C 1.50699 * 109.47110 * 105.91711 * 11 10 8 13 13 H 1.08005 * 119.99634 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00361 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99648 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00324 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47134 * 90.00062 * 16 14 12 18 18 H 1.48506 * 109.47042 * 209.99833 * 16 14 12 19 19 H 1.48495 * 109.47320 * 329.99918 * 16 14 12 20 20 C 1.46499 * 119.99889 * 186.61591 * 10 8 7 21 21 C 1.53001 * 109.46639 * 94.92339 * 20 10 8 22 22 C 1.53008 * 117.49472 * 246.99552 * 21 20 10 23 23 C 1.53004 * 117.49368 * 178.33823 * 21 20 10 24 24 C 1.37788 * 119.84901 * 180.02562 * 2 1 3 25 25 H 1.08991 * 109.47269 * 274.93558 * 1 2 3 26 26 H 1.09006 * 109.46913 * 34.94120 * 1 2 3 27 27 H 1.09000 * 109.47020 * 154.93311 * 1 2 3 28 28 H 1.08006 * 119.80934 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.95375 * 180.30334 * 4 3 2 30 30 H 0.96696 * 113.99947 * 269.72281 * 6 5 4 31 31 H 1.09000 * 109.47154 * 225.91642 * 11 10 8 32 32 H 1.09000 * 109.47174 * 345.92306 * 11 10 8 33 33 H 0.96996 * 119.99773 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.46830 * 214.91744 * 20 10 8 35 35 H 1.08990 * 109.47267 * 334.92265 * 20 10 8 36 36 H 1.08998 * 115.55645 * 32.66292 * 21 20 10 37 37 H 1.08999 * 117.49835 * 359.97438 * 22 21 20 38 38 H 1.08992 * 117.50043 * 145.02601 * 22 21 20 39 39 H 1.09005 * 117.49398 * 214.97593 * 23 21 20 40 40 H 1.08992 * 117.50202 * 359.97438 * 23 21 20 41 41 H 1.08000 * 120.04776 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2016 0.0000 4 6 3.5771 1.2146 0.0054 5 6 4.2836 0.0211 -0.0009 6 8 5.6402 0.0324 -0.0014 7 6 3.5899 -1.1965 -0.0009 8 6 4.3305 -2.4725 -0.0019 9 8 5.3859 -2.5624 -0.5989 10 7 3.8373 -3.5385 0.6590 11 6 2.5006 -3.4763 1.2555 12 6 1.5419 -4.2911 0.4261 13 1 1.8933 -4.8044 -0.4569 14 6 0.2163 -4.3815 0.7943 15 7 -0.2114 -3.7568 1.8698 16 14 -0.9718 -5.3921 -0.2335 17 1 -0.9948 -6.7898 0.2678 18 1 -2.3335 -4.8079 -0.1335 19 1 -0.5318 -5.3820 -1.6517 20 6 4.6377 -4.7594 0.7808 21 6 5.3940 -4.7428 2.1107 22 6 6.9189 -4.6311 2.0548 23 6 6.2620 -5.9576 2.4450 24 6 2.1928 -1.1951 -0.0005 25 1 -0.3633 0.0884 1.0238 26 1 -0.3633 0.8425 -0.5886 27 1 -0.3633 -0.9309 -0.4354 28 1 1.6509 2.1338 0.0004 29 1 4.1075 2.1554 0.0103 30 1 6.0331 0.0358 -0.8849 31 1 2.5358 -3.8770 2.2686 32 1 2.1642 -2.4399 1.2861 33 1 -1.1440 -3.8201 2.1286 34 1 3.9813 -5.6290 0.7470 35 1 5.3506 -4.8101 -0.0420 36 1 4.8830 -4.2469 2.9360 37 1 7.3833 -4.5700 1.0706 38 1 7.4112 -4.0622 2.8434 39 1 6.3223 -6.2607 3.4903 40 1 6.2939 -6.7688 1.7177 41 1 1.6511 -2.1294 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155553865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = -15.236992 kcal Electronic energy + Delta-G solvation = -23641.708278 eV Core-core repulsion = 20295.203070 eV Total energy + Delta-G solvation = -3346.505208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.10103 -38.30455 -36.76719 -36.60840 -34.75741 -32.56959 -31.38125 -30.97729 -27.78180 -26.45408 -25.84176 -23.49138 -22.51302 -22.01210 -21.53242 -20.19225 -18.83529 -17.59767 -16.61320 -16.51618 -15.88729 -15.33753 -15.18070 -14.59953 -14.43878 -14.35783 -13.89775 -13.51391 -13.23212 -13.07021 -12.91074 -12.39939 -12.39091 -11.83152 -11.47307 -11.41927 -11.33442 -11.21170 -11.07728 -11.02605 -10.93057 -10.55494 -10.33082 -10.11316 -9.94269 -9.72838 -9.53848 -9.02516 -8.75036 -8.28470 -7.98271 -7.68896 -6.27523 -4.36399 1.36268 1.71491 3.16796 3.24836 3.28032 3.46287 3.80129 4.15225 4.21988 4.30705 4.64394 5.03082 5.12234 5.16160 5.23954 5.31515 5.35427 5.41823 5.65123 5.78914 5.86109 5.90042 6.01640 6.10225 6.11809 6.19417 6.20153 6.32677 6.41553 6.47798 6.52487 6.61464 6.66007 6.77524 6.85095 7.02489 7.20113 7.29497 7.51486 7.66726 7.94442 8.05184 8.35631 8.71311 9.00437 9.31644 10.77454 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009653 B = 0.008813 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.875738 B = 3176.438080 C = 5590.675446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.109 4.109 3 C -0.090 4.090 4 C -0.168 4.168 5 C 0.145 3.855 6 O -0.490 6.490 7 C -0.156 4.156 8 C 0.564 3.436 9 O -0.565 6.565 10 N -0.586 5.586 11 C 0.206 3.794 12 C -0.542 4.542 13 H 0.064 0.936 14 C 0.069 3.931 15 N -0.881 5.881 16 Si 0.894 3.106 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.151 3.849 21 C -0.159 4.159 22 C -0.177 4.177 23 C -0.179 4.179 24 C -0.070 4.070 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.122 0.878 29 H 0.125 0.875 30 H 0.391 0.609 31 H 0.030 0.970 32 H 0.071 0.929 33 H 0.267 0.733 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 5.268 -1.731 7.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.108 4.108 4 C -0.186 4.186 5 C 0.099 3.901 6 O -0.300 6.300 7 C -0.160 4.160 8 C 0.353 3.647 9 O -0.446 6.446 10 N -0.314 5.314 11 C 0.087 3.913 12 C -0.580 4.580 13 H 0.082 0.918 14 C -0.135 4.135 15 N -0.518 5.518 16 Si 0.721 3.279 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.196 1.196 20 C 0.027 3.973 21 C -0.179 4.179 22 C -0.214 4.214 23 C -0.217 4.217 24 C -0.088 4.088 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.248 0.752 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 4.792 5.225 -1.300 7.208 hybrid contribution -0.705 -0.536 -0.706 1.133 sum 4.086 4.689 -2.006 6.536 Atomic orbital electron populations 1.20715 0.90775 1.02546 1.02368 1.19933 0.96627 0.92674 1.01702 1.20997 0.93417 0.97661 0.98736 1.21169 0.94429 0.97138 1.05889 1.18406 0.82976 0.90916 0.97757 1.84664 1.15603 1.96250 1.33498 1.20407 0.94486 0.93392 1.07677 1.18010 0.84317 0.83466 0.78880 1.90629 1.24114 1.84581 1.45272 1.47974 1.18396 1.12035 1.53025 1.20300 0.76791 1.00100 0.94139 1.21442 0.93421 1.31694 1.11489 0.91812 1.24950 0.98134 0.95373 0.95068 1.69940 1.16566 1.41679 1.23660 0.86550 0.80149 0.80462 0.80756 1.20408 1.20888 1.19635 1.20832 0.94128 0.87915 0.94408 1.22759 0.92719 1.01910 1.00471 1.22973 0.95789 0.99936 1.02655 1.22894 1.05223 0.91844 1.01716 1.22681 0.92844 1.01263 0.91972 0.91076 0.92386 0.90948 0.86050 0.85660 0.75229 0.95221 0.91204 0.92314 0.89778 0.90584 0.87876 0.88764 0.89534 0.89191 0.88947 0.79389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 10.00 36.01 0.36 -1.29 16 2 C -0.11 -1.89 5.87 -104.67 -0.61 -2.50 16 3 C -0.09 -1.35 9.70 -39.53 -0.38 -1.73 16 4 C -0.17 -2.59 9.98 -39.48 -0.39 -2.99 16 5 C 0.15 2.65 6.68 -38.70 -0.26 2.40 16 6 O -0.49 -8.55 12.12 -36.64 -0.44 -8.99 16 7 C -0.16 -3.22 5.52 -104.84 -0.58 -3.80 16 8 C 0.56 12.58 7.27 -12.47 -0.09 12.49 16 9 O -0.56 -13.11 15.40 -12.67 -0.20 -13.30 16 10 N -0.59 -12.82 2.50 -176.29 -0.44 -13.27 16 11 C 0.21 4.86 4.72 -5.19 -0.02 4.83 16 12 C -0.54 -13.47 7.54 -34.44 -0.26 -13.73 16 13 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 14 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.88 -22.69 13.29 55.43 0.74 -21.95 16 16 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 20 C 0.15 2.94 5.73 -4.04 -0.02 2.92 16 21 C -0.16 -2.78 6.01 -90.61 -0.54 -3.32 16 22 C -0.18 -2.73 10.18 -26.68 -0.27 -3.00 16 23 C -0.18 -2.54 10.25 -26.69 -0.27 -2.82 16 24 C -0.07 -1.41 7.04 -39.20 -0.28 -1.69 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 27 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 28 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 30 H 0.39 5.36 9.06 45.56 0.41 5.77 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.69 3.68 -52.97 -0.20 1.49 16 33 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 34 H 0.08 1.64 7.87 -51.93 -0.41 1.23 16 35 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 36 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 37 H 0.09 1.49 8.04 -51.93 -0.42 1.07 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.19 4.26 4.04 -52.49 -0.21 4.04 16 LS Contribution 343.04 15.07 5.17 5.17 Total: -1.00 -28.29 343.04 -8.87 -37.16 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -4.95 Total: 13.26 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -3.73 Total: -12.61 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.29 Total: -35.22 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.64 Total: -22.30 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.29 -8.87 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155553865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.923 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds