Wall clock time and date at job start Tue Mar 31 2020 06:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38542 * 119.84824 * 2 1 4 4 C 1.38063 * 120.38687 * 179.74054 * 3 2 1 5 5 C 1.38699 * 120.08406 * 0.56067 * 4 3 2 6 6 O 1.35658 * 120.14810 * 179.71860 * 5 4 3 7 7 C 1.40138 * 119.70227 * 359.44219 * 5 4 3 8 8 C 1.47536 * 120.19510 * 180.25221 * 7 5 4 9 9 O 1.21582 * 119.99926 * 325.51078 * 8 7 5 10 10 N 1.34777 * 119.99913 * 145.50859 * 8 7 5 11 11 C 1.46505 * 119.99972 * 6.61962 * 10 8 7 12 12 C 1.50699 * 109.47110 * 105.91711 * 11 10 8 13 13 H 1.08005 * 119.99634 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00361 * 180.02562 * 12 11 10 15 15 N 1.31523 * 119.99648 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00324 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47134 * 90.00062 * 16 14 12 18 18 H 1.48506 * 109.47042 * 209.99833 * 16 14 12 19 19 H 1.48495 * 109.47320 * 329.99918 * 16 14 12 20 20 C 1.46499 * 119.99889 * 186.61591 * 10 8 7 21 21 C 1.53001 * 109.46639 * 94.92339 * 20 10 8 22 22 C 1.53008 * 117.49472 * 246.99552 * 21 20 10 23 23 C 1.53004 * 117.49368 * 178.33823 * 21 20 10 24 24 C 1.37788 * 119.84901 * 180.02562 * 2 1 3 25 25 H 1.08991 * 109.47269 * 274.93558 * 1 2 3 26 26 H 1.09006 * 109.46913 * 34.94120 * 1 2 3 27 27 H 1.09000 * 109.47020 * 154.93311 * 1 2 3 28 28 H 1.08006 * 119.80934 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.95375 * 180.30334 * 4 3 2 30 30 H 0.96696 * 113.99947 * 269.72281 * 6 5 4 31 31 H 1.09000 * 109.47154 * 225.91642 * 11 10 8 32 32 H 1.09000 * 109.47174 * 345.92306 * 11 10 8 33 33 H 0.96996 * 119.99773 * 179.97438 * 15 14 12 34 34 H 1.08999 * 109.46830 * 214.91744 * 20 10 8 35 35 H 1.08990 * 109.47267 * 334.92265 * 20 10 8 36 36 H 1.08998 * 115.55645 * 32.66292 * 21 20 10 37 37 H 1.08999 * 117.49835 * 359.97438 * 22 21 20 38 38 H 1.08992 * 117.50043 * 145.02601 * 22 21 20 39 39 H 1.09005 * 117.49398 * 214.97593 * 23 21 20 40 40 H 1.08992 * 117.50202 * 359.97438 * 23 21 20 41 41 H 1.08000 * 120.04776 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2016 0.0000 4 6 3.5771 1.2146 0.0054 5 6 4.2836 0.0211 -0.0009 6 8 5.6402 0.0324 -0.0014 7 6 3.5899 -1.1965 -0.0009 8 6 4.3305 -2.4725 -0.0019 9 8 5.3859 -2.5624 -0.5989 10 7 3.8373 -3.5385 0.6590 11 6 2.5006 -3.4763 1.2555 12 6 1.5419 -4.2911 0.4261 13 1 1.8933 -4.8044 -0.4569 14 6 0.2163 -4.3815 0.7943 15 7 -0.2114 -3.7568 1.8698 16 14 -0.9718 -5.3921 -0.2335 17 1 -0.9948 -6.7898 0.2678 18 1 -2.3335 -4.8079 -0.1335 19 1 -0.5318 -5.3820 -1.6517 20 6 4.6377 -4.7594 0.7808 21 6 5.3940 -4.7428 2.1107 22 6 6.9189 -4.6311 2.0548 23 6 6.2620 -5.9576 2.4450 24 6 2.1928 -1.1951 -0.0005 25 1 -0.3633 0.0884 1.0238 26 1 -0.3633 0.8425 -0.5886 27 1 -0.3633 -0.9309 -0.4354 28 1 1.6509 2.1338 0.0004 29 1 4.1075 2.1554 0.0103 30 1 6.0331 0.0358 -0.8849 31 1 2.5358 -3.8770 2.2686 32 1 2.1642 -2.4399 1.2861 33 1 -1.1440 -3.8201 2.1286 34 1 3.9813 -5.6290 0.7470 35 1 5.3506 -4.8101 -0.0420 36 1 4.8830 -4.2469 2.9360 37 1 7.3833 -4.5700 1.0706 38 1 7.4112 -4.0622 2.8434 39 1 6.3223 -6.2607 3.4903 40 1 6.2939 -6.7688 1.7177 41 1 1.6511 -2.1294 -0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155553865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:34 Heat of formation + Delta-G solvation = -30.237088 kcal Electronic energy + Delta-G solvation = -23642.358731 eV Core-core repulsion = 20295.203070 eV Total energy + Delta-G solvation = -3347.155661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62984 -39.79381 -38.21689 -37.96423 -36.46838 -34.45998 -32.72929 -32.35306 -29.60170 -28.04710 -27.16561 -25.22870 -24.09595 -23.23216 -22.90651 -21.61322 -20.39286 -19.05611 -18.51453 -18.09121 -17.50710 -16.76222 -16.54895 -16.35692 -16.01480 -15.80545 -15.25771 -15.02482 -14.67761 -14.51208 -14.34774 -14.22145 -13.75466 -13.40733 -13.01332 -12.94364 -12.75233 -12.64803 -12.57788 -12.38402 -12.38095 -12.21984 -11.99894 -11.73657 -11.47511 -11.35223 -10.90195 -10.72594 -10.55011 -9.78692 -9.49051 -9.30298 -8.21078 -6.36625 -0.04166 0.36035 1.40649 1.43741 1.52460 1.86528 2.21359 2.41474 2.75419 2.91619 3.07490 3.32429 3.66217 3.80247 3.97214 4.02098 4.04738 4.12207 4.34816 4.41930 4.47979 4.64544 4.72908 4.75441 4.79649 4.85285 4.89786 4.94044 4.96946 5.13509 5.20342 5.22697 5.24719 5.27481 5.33257 5.42263 5.65426 5.69421 5.78512 5.95365 6.01344 6.55207 6.77432 6.81333 7.24128 7.36899 8.83735 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009653 B = 0.008813 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2899.875738 B = 3176.438080 C = 5590.675446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.116 4.116 3 C -0.072 4.072 4 C -0.154 4.154 5 C 0.137 3.863 6 O -0.499 6.499 7 C -0.188 4.188 8 C 0.556 3.444 9 O -0.583 6.583 10 N -0.590 5.590 11 C 0.222 3.778 12 C -0.550 4.550 13 H 0.051 0.949 14 C 0.034 3.966 15 N -0.904 5.904 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.274 1.274 19 H -0.273 1.273 20 C 0.151 3.849 21 C -0.187 4.187 22 C -0.171 4.171 23 C -0.150 4.150 24 C -0.092 4.092 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.049 0.951 28 H 0.167 0.833 29 H 0.163 0.837 30 H 0.405 0.595 31 H 0.003 0.997 32 H 0.069 0.931 33 H 0.270 0.730 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 6.852 -1.937 8.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 C -0.090 4.090 4 C -0.173 4.173 5 C 0.091 3.909 6 O -0.312 6.312 7 C -0.191 4.191 8 C 0.346 3.654 9 O -0.466 6.466 10 N -0.319 5.319 11 C 0.102 3.898 12 C -0.588 4.588 13 H 0.069 0.931 14 C -0.168 4.168 15 N -0.542 5.542 16 Si 0.776 3.224 17 H -0.202 1.202 18 H -0.199 1.199 19 H -0.198 1.198 20 C 0.028 3.972 21 C -0.207 4.207 22 C -0.208 4.208 23 C -0.188 4.188 24 C -0.110 4.110 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.185 0.815 29 H 0.180 0.820 30 H 0.264 0.736 31 H 0.021 0.979 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.636 6.800 -1.509 8.367 hybrid contribution -0.615 -0.960 -0.657 1.315 sum 4.022 5.840 -2.166 7.414 Atomic orbital electron populations 1.20719 0.89556 1.02971 1.02769 1.20201 0.97639 0.92576 1.01224 1.21448 0.93391 0.98304 0.95852 1.21557 0.94745 0.97311 1.03645 1.18640 0.83327 0.91094 0.97852 1.84616 1.15455 1.96221 1.34903 1.20457 0.94826 0.93480 1.10365 1.18441 0.84352 0.84200 0.78419 1.90584 1.24919 1.85047 1.46081 1.48030 1.18094 1.12895 1.52871 1.20007 0.77523 0.99701 0.92562 1.21474 0.94150 1.31964 1.11220 0.93085 1.25544 0.99230 0.96102 0.95916 1.70016 1.17010 1.42470 1.24677 0.85662 0.78514 0.79050 0.79149 1.20214 1.19937 1.19804 1.20878 0.93800 0.86880 0.95662 1.22584 0.93783 1.05524 0.98781 1.23002 0.93808 1.01121 1.02895 1.23023 1.01391 0.91056 1.03289 1.22399 0.92790 1.01467 0.94372 0.91173 0.88698 0.93195 0.81511 0.81964 0.73593 0.97872 0.91364 0.92029 0.90565 0.90990 0.89635 0.89244 0.88393 0.87119 0.87594 0.82496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.02 10.00 71.24 0.71 -2.31 16 2 C -0.12 -3.87 5.87 -19.90 -0.12 -3.98 16 3 C -0.07 -1.89 9.70 22.30 0.22 -1.68 16 4 C -0.15 -4.26 9.98 22.34 0.22 -4.04 16 5 C 0.14 4.87 6.68 22.84 0.15 5.02 16 6 O -0.50 -17.04 12.12 -72.56 -0.88 -17.92 16 7 C -0.19 -7.93 5.52 -20.01 -0.11 -8.04 16 8 C 0.56 25.87 7.27 86.70 0.63 26.50 16 9 O -0.58 -28.02 15.40 13.20 0.20 -27.82 16 10 N -0.59 -27.37 2.50 -829.93 -2.08 -29.45 16 11 C 0.22 11.11 4.72 85.63 0.40 11.52 16 12 C -0.55 -28.60 7.54 25.60 0.19 -28.41 16 13 H 0.05 2.72 7.81 -2.91 -0.02 2.70 16 14 C 0.03 1.76 5.46 84.65 0.46 2.22 16 15 N -0.90 -47.61 13.29 21.45 0.28 -47.33 16 16 Si 0.95 40.67 29.54 68.60 2.03 42.70 16 17 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.15 6.18 5.73 86.38 0.50 6.68 16 21 C -0.19 -6.72 6.01 -10.79 -0.06 -6.78 16 22 C -0.17 -5.23 10.18 30.62 0.31 -4.92 16 23 C -0.15 -4.09 10.25 30.62 0.31 -3.78 16 24 C -0.09 -3.83 7.04 22.52 0.16 -3.67 16 25 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.09 2.03 8.12 -2.38 -0.02 2.01 16 27 H 0.05 1.66 8.05 -2.39 -0.02 1.64 16 28 H 0.17 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.41 10.81 9.06 -74.06 -0.67 10.14 16 31 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.07 3.50 3.68 -3.36 -0.01 3.49 16 33 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 34 H 0.08 3.15 7.87 -2.39 -0.02 3.13 16 35 H 0.07 2.96 6.95 -2.39 -0.02 2.94 16 36 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.09 2.82 8.04 -2.39 -0.02 2.80 16 38 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 40 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.16 7.50 4.04 -2.91 -0.01 7.49 16 Total: -1.00 -63.33 343.04 3.91 -59.42 By element: Atomic # 1 Polarization: 35.67 SS G_CDS: 0.38 Total: 36.05 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 3.98 Total: -15.66 kcal Atomic # 7 Polarization: -74.98 SS G_CDS: -1.79 Total: -76.78 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.68 Total: -45.73 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -63.33 3.91 -59.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155553865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.184 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds