Wall clock time and date at job start Tue Mar 31 2020 07:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34513 * 125.79156 * 2 1 4 4 C 1.41379 * 106.84269 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.58193 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46926 * 266.32825 * 5 4 3 7 7 C 1.46904 * 110.99755 * 297.03964 * 6 5 4 8 8 C 1.50704 * 109.47174 * 171.64227 * 7 6 5 9 9 H 1.08001 * 119.99999 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99860 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00115 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99623 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47433 * 60.00263 * 12 10 8 14 14 H 1.48500 * 109.46954 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47216 * 299.99796 * 12 10 8 16 16 C 1.46897 * 111.00120 * 173.08723 * 6 5 4 17 17 C 1.50696 * 109.47329 * 287.80193 * 16 6 5 18 18 C 1.34520 * 125.79057 * 93.90519 * 17 16 6 19 19 C 1.41374 * 106.84447 * 179.97438 * 18 17 16 20 20 C 1.34522 * 106.84018 * 0.02562 * 19 18 17 21 21 O 1.34298 * 125.79389 * 273.88999 * 17 16 6 22 22 C 1.34517 * 106.84140 * 0.22497 * 4 3 2 23 23 C 1.50697 * 125.78900 * 179.77095 * 22 4 3 24 24 O 1.34301 * 125.79124 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47806 * 94.93834 * 1 2 3 26 26 H 1.09005 * 109.46927 * 214.94246 * 1 2 3 27 27 H 1.09000 * 109.47324 * 334.93150 * 1 2 3 28 28 H 1.08003 * 126.58023 * 359.97438 * 3 2 1 29 29 H 1.08989 * 109.47158 * 146.32376 * 5 4 3 30 30 H 1.09000 * 109.46890 * 26.32270 * 5 4 3 31 31 H 1.08998 * 109.46982 * 291.64148 * 7 6 5 32 32 H 1.09002 * 109.47133 * 51.64460 * 7 6 5 33 33 H 0.96998 * 120.00037 * 179.97438 * 11 10 8 34 34 H 1.09001 * 109.47046 * 167.79990 * 16 6 5 35 35 H 1.08996 * 109.46924 * 47.80343 * 16 6 5 36 36 H 1.08000 * 126.57679 * 0.02651 * 18 17 16 37 37 H 1.07995 * 126.58048 * 180.02562 * 19 18 17 38 38 H 1.07996 * 125.78755 * 180.25962 * 20 19 18 39 39 H 1.09002 * 109.46912 * 96.00718 * 23 22 4 40 40 H 1.08997 * 109.47285 * 216.00238 * 23 22 4 41 41 H 1.08997 * 109.47394 * 336.00587 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8733 1.4850 -0.0014 6 7 5.3264 1.6887 -1.3838 7 6 5.7016 0.4130 -2.0082 8 6 5.9627 0.6300 -3.4765 9 1 5.8607 1.6169 -3.9030 10 6 6.3330 -0.4312 -4.2750 11 7 6.4578 -1.6329 -3.7555 12 14 6.6574 -0.1621 -6.0948 13 1 7.7632 0.8151 -6.2614 14 1 7.0377 -1.4514 -6.7258 15 1 5.4298 0.3642 -6.7439 16 6 6.4376 2.6480 -1.4376 17 6 5.9171 4.0355 -1.1641 18 6 5.8898 4.6433 0.0357 19 6 5.3257 5.9237 -0.1664 20 6 5.0413 6.0218 -1.4776 21 8 5.4020 4.8753 -2.0768 22 6 3.5813 -0.7122 -0.0060 23 6 4.7705 -1.6379 -0.0135 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3634 -0.0885 -1.0238 26 1 -0.3633 -0.8425 0.5886 27 1 -0.3634 0.9308 0.4354 28 1 1.9665 2.1204 -0.0004 29 1 5.6570 0.9857 0.5681 30 1 4.6517 2.4500 0.4543 31 1 6.6027 0.0266 -1.5321 32 1 4.8898 -0.3041 -1.8857 33 1 6.7179 -2.3796 -4.3173 34 1 6.8944 2.6197 -2.4268 35 1 7.1818 2.3845 -0.6861 36 1 6.2338 4.2322 0.9733 37 1 5.1556 6.6783 0.5872 38 1 4.6023 6.8790 -1.9662 39 1 4.9943 -1.9501 1.0066 40 1 4.5447 -2.5146 -0.6205 41 1 5.6326 -1.1185 -0.4319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159601179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:24 Heat of formation + Delta-G solvation = 36.014234 kcal Electronic energy + Delta-G solvation = -23323.372703 eV Core-core repulsion = 19979.089915 eV Total energy + Delta-G solvation = -3344.282788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18068 -42.07710 -37.11455 -33.08052 -32.82202 -32.52370 -32.32068 -29.88545 -29.34720 -27.49215 -26.06196 -24.19867 -23.36346 -21.48792 -21.33900 -20.49218 -19.88376 -18.51845 -16.99434 -16.51830 -15.95289 -15.82112 -15.59921 -14.80515 -14.46407 -14.10800 -13.79283 -13.36668 -13.25608 -13.22653 -12.88519 -12.54813 -12.47083 -12.33660 -12.24975 -12.03621 -11.96845 -11.65135 -11.48021 -11.16495 -10.91713 -10.75190 -10.68039 -10.38444 -9.91892 -9.58112 -9.17878 -9.08136 -8.44542 -8.09895 -7.66439 -7.26090 -6.04563 -4.04714 2.11202 2.23497 2.92176 3.10898 3.33816 3.37623 3.41197 3.41919 3.43945 4.43314 5.01228 5.06482 5.20045 5.31740 5.33250 5.33921 5.39137 5.50664 5.56317 5.60663 5.73946 5.82884 5.91083 5.99576 6.00306 6.09563 6.11961 6.21342 6.29688 6.38359 6.47552 6.53637 6.62951 6.82291 6.85425 7.09203 7.21626 7.25358 7.58042 7.71785 7.78388 8.04617 8.13420 8.50891 9.01432 9.59193 11.06046 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.008383 B = 0.007930 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.255799 B = 3529.978596 C = 5925.776586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.040 4.040 3 C -0.184 4.184 4 C -0.160 4.160 5 C 0.121 3.879 6 N -0.527 5.527 7 C 0.184 3.816 8 C -0.512 4.512 9 H 0.063 0.937 10 C 0.059 3.941 11 N -0.896 5.896 12 Si 0.895 3.105 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C 0.129 3.871 17 C 0.031 3.969 18 C -0.231 4.231 19 C -0.215 4.215 20 C -0.056 4.056 21 O -0.165 6.165 22 C 0.006 3.994 23 C -0.085 4.085 24 O -0.179 6.179 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.140 0.860 29 H 0.030 0.970 30 H 0.073 0.927 31 H -0.008 1.008 32 H 0.053 0.947 33 H 0.262 0.738 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.195 0.805 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 7.449 9.639 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C -0.204 4.204 4 C -0.162 4.162 5 C -0.007 4.007 6 N -0.252 5.252 7 C 0.060 3.940 8 C -0.550 4.550 9 H 0.081 0.919 10 C -0.142 4.142 11 N -0.536 5.536 12 Si 0.723 3.277 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.202 1.202 16 C 0.001 3.999 17 C -0.020 4.020 18 C -0.251 4.251 19 C -0.235 4.235 20 C -0.125 4.125 21 O -0.059 6.059 22 C -0.045 4.045 23 C -0.141 4.141 24 O -0.076 6.076 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.158 0.842 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.212 0.788 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.823 7.074 9.004 12.846 hybrid contribution 0.743 0.141 -0.405 0.858 sum -5.080 7.215 8.599 12.321 Atomic orbital electron populations 1.20168 0.85796 1.03177 1.03021 1.22145 0.93601 0.84413 1.08786 1.21300 0.92308 0.98795 1.07953 1.19921 0.95307 0.92718 1.08261 1.20406 0.92021 0.97318 0.90934 1.62039 1.34648 1.13869 1.14648 1.20109 0.95140 0.84770 0.93938 1.21155 1.45605 0.95105 0.93172 0.91909 1.24922 0.95576 0.95075 0.98648 1.69915 1.48101 0.99583 1.35953 0.86603 0.78749 0.77213 0.85134 1.20257 1.21357 1.20224 1.20516 0.91955 0.83447 1.03948 1.22818 0.98877 0.93330 0.87014 1.21514 1.09308 0.96030 0.98246 1.21696 1.06519 0.98725 0.96518 1.23906 1.05611 0.89780 0.93158 1.84091 1.60971 1.22693 1.38174 1.22280 0.82828 0.94458 1.04909 1.20684 0.92684 0.98737 1.01948 1.83897 1.16543 1.34919 1.72272 0.90642 0.91201 0.89899 0.84234 0.95150 0.90892 0.99008 0.92893 0.92868 0.87525 0.92602 0.84141 0.84172 0.78836 0.91558 0.90362 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.42 36.00 0.37 -0.39 16 2 C -0.04 -0.68 7.32 -35.63 -0.26 -0.94 16 3 C -0.18 -3.31 10.77 -39.70 -0.43 -3.74 16 4 C -0.16 -3.14 5.10 -104.74 -0.53 -3.67 16 5 C 0.12 2.29 4.98 -4.97 -0.02 2.26 16 6 N -0.53 -11.40 4.47 -238.97 -1.07 -12.46 16 7 C 0.18 4.60 3.11 -4.97 -0.02 4.58 16 8 C -0.51 -14.12 8.27 -34.44 -0.28 -14.40 16 9 H 0.06 1.75 7.14 -52.49 -0.37 1.38 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -25.58 13.29 55.43 0.74 -24.85 16 12 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.13 2.51 5.35 -4.98 -0.03 2.48 16 17 C 0.03 0.56 6.31 -35.62 -0.22 0.34 16 18 C -0.23 -3.58 9.66 -39.70 -0.38 -3.96 16 19 C -0.22 -2.97 10.91 -39.70 -0.43 -3.40 16 20 C -0.06 -0.80 12.09 29.42 0.36 -0.44 16 21 O -0.16 -2.99 10.65 5.73 0.06 -2.93 16 22 C 0.01 0.12 6.30 -35.63 -0.22 -0.11 16 23 C -0.08 -1.54 9.24 36.00 0.33 -1.20 16 24 O -0.18 -3.43 10.65 5.72 0.06 -3.37 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.14 2.26 8.06 -52.48 -0.42 1.84 16 29 H 0.03 0.55 7.83 -51.94 -0.41 0.14 16 30 H 0.07 1.29 6.44 -51.93 -0.33 0.96 16 31 H -0.01 -0.20 7.23 -51.93 -0.38 -0.57 16 32 H 0.05 1.41 4.61 -51.93 -0.24 1.17 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.11 2.26 6.46 -51.93 -0.34 1.93 16 35 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 36 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.11 2.20 4.39 -51.93 -0.23 1.98 16 LS Contribution 338.59 15.07 5.10 5.10 Total: -1.00 -31.27 338.59 -7.65 -38.93 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -5.65 Total: 4.07 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -1.87 Total: -21.05 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.33 Total: -37.31 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: 0.12 Total: -6.31 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.27 -7.65 -38.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159601179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.941 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds