Wall clock time and date at job start Tue Mar 31 2020 07:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34513 * 125.79156 * 2 1 4 4 C 1.41379 * 106.84269 * 180.02562 * 3 2 1 5 5 C 1.50708 * 126.58193 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46926 * 266.32825 * 5 4 3 7 7 C 1.46904 * 110.99755 * 297.03964 * 6 5 4 8 8 C 1.50704 * 109.47174 * 171.64227 * 7 6 5 9 9 H 1.08001 * 119.99999 * 0.02562 * 8 7 6 10 10 C 1.37874 * 119.99860 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00115 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99623 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47433 * 60.00263 * 12 10 8 14 14 H 1.48500 * 109.46954 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47216 * 299.99796 * 12 10 8 16 16 C 1.46897 * 111.00120 * 173.08723 * 6 5 4 17 17 C 1.50696 * 109.47329 * 287.80193 * 16 6 5 18 18 C 1.34520 * 125.79057 * 93.90519 * 17 16 6 19 19 C 1.41374 * 106.84447 * 179.97438 * 18 17 16 20 20 C 1.34522 * 106.84018 * 0.02562 * 19 18 17 21 21 O 1.34298 * 125.79389 * 273.88999 * 17 16 6 22 22 C 1.34517 * 106.84140 * 0.22497 * 4 3 2 23 23 C 1.50697 * 125.78900 * 179.77095 * 22 4 3 24 24 O 1.34301 * 125.79124 * 180.02562 * 2 1 3 25 25 H 1.08995 * 109.47806 * 94.93834 * 1 2 3 26 26 H 1.09005 * 109.46927 * 214.94246 * 1 2 3 27 27 H 1.09000 * 109.47324 * 334.93150 * 1 2 3 28 28 H 1.08003 * 126.58023 * 359.97438 * 3 2 1 29 29 H 1.08989 * 109.47158 * 146.32376 * 5 4 3 30 30 H 1.09000 * 109.46890 * 26.32270 * 5 4 3 31 31 H 1.08998 * 109.46982 * 291.64148 * 7 6 5 32 32 H 1.09002 * 109.47133 * 51.64460 * 7 6 5 33 33 H 0.96998 * 120.00037 * 179.97438 * 11 10 8 34 34 H 1.09001 * 109.47046 * 167.79990 * 16 6 5 35 35 H 1.08996 * 109.46924 * 47.80343 * 16 6 5 36 36 H 1.08000 * 126.57679 * 0.02651 * 18 17 16 37 37 H 1.07995 * 126.58048 * 180.02562 * 19 18 17 38 38 H 1.07996 * 125.78755 * 180.25962 * 20 19 18 39 39 H 1.09002 * 109.46912 * 96.00718 * 23 22 4 40 40 H 1.08997 * 109.47285 * 216.00238 * 23 22 4 41 41 H 1.08997 * 109.47394 * 336.00587 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2936 1.0911 0.0000 4 6 3.6308 0.6320 -0.0006 5 6 4.8733 1.4850 -0.0014 6 7 5.3264 1.6887 -1.3838 7 6 5.7016 0.4130 -2.0082 8 6 5.9627 0.6300 -3.4765 9 1 5.8607 1.6169 -3.9030 10 6 6.3330 -0.4312 -4.2750 11 7 6.4578 -1.6329 -3.7555 12 14 6.6574 -0.1621 -6.0948 13 1 7.7632 0.8151 -6.2614 14 1 7.0377 -1.4514 -6.7258 15 1 5.4298 0.3642 -6.7439 16 6 6.4376 2.6480 -1.4376 17 6 5.9171 4.0355 -1.1641 18 6 5.8898 4.6433 0.0357 19 6 5.3257 5.9237 -0.1664 20 6 5.0413 6.0218 -1.4776 21 8 5.4020 4.8753 -2.0768 22 6 3.5813 -0.7122 -0.0060 23 6 4.7705 -1.6379 -0.0135 24 8 2.2924 -1.0894 -0.0005 25 1 -0.3634 -0.0885 -1.0238 26 1 -0.3633 -0.8425 0.5886 27 1 -0.3634 0.9308 0.4354 28 1 1.9665 2.1204 -0.0004 29 1 5.6570 0.9857 0.5681 30 1 4.6517 2.4500 0.4543 31 1 6.6027 0.0266 -1.5321 32 1 4.8898 -0.3041 -1.8857 33 1 6.7179 -2.3796 -4.3173 34 1 6.8944 2.6197 -2.4268 35 1 7.1818 2.3845 -0.6861 36 1 6.2338 4.2322 0.9733 37 1 5.1556 6.6783 0.5872 38 1 4.6023 6.8790 -1.9662 39 1 4.9943 -1.9501 1.0066 40 1 4.5447 -2.5146 -0.6205 41 1 5.6326 -1.1185 -0.4319 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159601179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:23 Heat of formation + Delta-G solvation = 17.297325 kcal Electronic energy + Delta-G solvation = -23324.184329 eV Core-core repulsion = 19979.089915 eV Total energy + Delta-G solvation = -3345.094414 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.54744 -43.35152 -38.76592 -34.87952 -34.37688 -33.86123 -33.67042 -31.30847 -30.68469 -29.22004 -27.52868 -25.80183 -24.91457 -23.10831 -22.53873 -21.94636 -21.20498 -19.96868 -18.63550 -18.13015 -17.40368 -17.27877 -16.96099 -16.57727 -16.00575 -15.68709 -15.42223 -14.70651 -14.68585 -14.54654 -14.17433 -13.96109 -13.69225 -13.61229 -13.50466 -13.43404 -13.31879 -13.25031 -13.08966 -12.83949 -12.59449 -12.58970 -12.25797 -12.11760 -11.77534 -11.20549 -10.74635 -10.57359 -10.53521 -9.35673 -9.10635 -8.89633 -8.17763 -6.25094 0.79015 0.92265 1.39481 1.41432 1.49126 1.65155 1.81144 2.07891 2.25952 2.41017 3.14773 3.49987 3.81151 3.93410 3.99103 4.04704 4.23052 4.26153 4.38348 4.40942 4.47325 4.55076 4.61913 4.63700 4.72242 4.73609 4.85719 4.99120 5.02144 5.05513 5.08077 5.14125 5.27048 5.30024 5.38780 5.45574 5.66051 5.71676 5.73960 6.08175 6.26440 6.33730 6.37581 6.62791 6.87752 7.42502 8.91881 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.008383 B = 0.007930 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3339.255799 B = 3529.978596 C = 5925.776586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.035 4.035 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.128 3.872 6 N -0.539 5.539 7 C 0.204 3.796 8 C -0.530 4.530 9 H 0.052 0.948 10 C 0.013 3.987 11 N -0.921 5.921 12 Si 0.956 3.044 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.277 1.277 16 C 0.134 3.866 17 C -0.007 4.007 18 C -0.217 4.217 19 C -0.217 4.217 20 C -0.053 4.053 21 O -0.196 6.196 22 C -0.019 4.019 23 C -0.077 4.077 24 O -0.193 6.193 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.156 0.844 29 H 0.035 0.965 30 H 0.087 0.913 31 H -0.027 1.027 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.157 0.843 37 H 0.174 0.826 38 H 0.234 0.766 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.603 9.258 10.350 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.084 4.084 3 C -0.225 4.225 4 C -0.179 4.179 5 C 0.000 4.000 6 N -0.264 5.264 7 C 0.079 3.921 8 C -0.568 4.568 9 H 0.070 0.930 10 C -0.186 4.186 11 N -0.561 5.561 12 Si 0.781 3.219 13 H -0.194 1.194 14 H -0.205 1.205 15 H -0.202 1.202 16 C 0.007 3.993 17 C -0.058 4.058 18 C -0.237 4.237 19 C -0.236 4.236 20 C -0.120 4.120 21 O -0.093 6.093 22 C -0.070 4.070 23 C -0.133 4.133 24 O -0.091 6.091 25 H 0.102 0.898 26 H 0.105 0.895 27 H 0.128 0.872 28 H 0.173 0.827 29 H 0.054 0.946 30 H 0.106 0.894 31 H -0.009 1.009 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.175 0.825 37 H 0.192 0.808 38 H 0.250 0.750 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.065 8.897 9.730 14.958 hybrid contribution 1.069 -0.327 -0.576 1.258 sum -5.996 8.570 9.155 13.899 Atomic orbital electron populations 1.20422 0.82039 1.05431 1.04142 1.23128 0.95624 0.83480 1.06174 1.21563 0.91797 0.99992 1.09153 1.20187 0.96289 0.92964 1.08414 1.20390 0.92012 0.98060 0.89496 1.61948 1.35579 1.12507 1.16377 1.19709 0.93468 0.86069 0.92838 1.21436 1.45824 0.94729 0.94820 0.92987 1.25682 0.95347 0.94841 1.02771 1.70020 1.48586 1.00166 1.37351 0.85648 0.78642 0.77469 0.80134 1.19400 1.20522 1.20222 1.20337 0.91669 0.84542 1.02752 1.22497 1.02061 0.93095 0.88116 1.21815 1.07547 0.96508 0.97788 1.22090 1.05790 0.98559 0.97173 1.24808 1.04149 0.89288 0.93759 1.84054 1.61785 1.24120 1.39318 1.22470 0.83369 0.94903 1.06214 1.20557 0.91615 0.97735 1.03393 1.83896 1.16577 1.36074 1.72537 0.89805 0.89494 0.87208 0.82666 0.94648 0.89431 1.00901 0.94681 0.92721 0.90397 0.91314 0.82511 0.80835 0.75011 0.88509 0.91456 0.89605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.34 10.42 71.23 0.74 -0.60 16 2 C -0.03 -1.14 7.32 24.83 0.18 -0.96 16 3 C -0.21 -7.24 10.77 22.19 0.24 -7.00 16 4 C -0.18 -6.98 5.10 -19.94 -0.10 -7.08 16 5 C 0.13 4.87 4.98 85.56 0.43 5.30 16 6 N -0.54 -24.03 4.47 -909.95 -4.07 -28.10 16 7 C 0.20 10.65 3.11 85.56 0.27 10.92 16 8 C -0.53 -30.30 8.27 25.60 0.21 -30.09 16 9 H 0.05 3.02 7.14 -2.91 -0.02 3.00 16 10 C 0.01 0.72 5.46 84.65 0.46 1.18 16 11 N -0.92 -53.97 13.29 21.45 0.28 -53.68 16 12 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 13 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 C 0.13 5.40 5.35 85.56 0.46 5.86 16 17 C -0.01 -0.25 6.31 24.83 0.16 -0.09 16 18 C -0.22 -6.28 9.66 22.19 0.21 -6.07 16 19 C -0.22 -5.28 10.91 22.19 0.24 -5.04 16 20 C -0.05 -1.36 12.09 66.97 0.81 -0.55 16 21 O -0.20 -7.05 10.65 -2.41 -0.03 -7.07 16 22 C -0.02 -0.77 6.30 24.83 0.16 -0.61 16 23 C -0.08 -2.90 9.24 71.24 0.66 -2.24 16 24 O -0.19 -7.41 10.65 -2.44 -0.03 -7.44 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.16 4.81 8.06 -2.91 -0.02 4.78 16 29 H 0.04 1.30 7.83 -2.39 -0.02 1.28 16 30 H 0.09 3.04 6.44 -2.39 -0.02 3.02 16 31 H -0.03 -1.45 7.23 -2.39 -0.02 -1.46 16 32 H 0.04 1.96 4.61 -2.39 -0.01 1.95 16 33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.08 3.51 6.46 -2.39 -0.02 3.49 16 35 H 0.07 2.49 8.05 -2.39 -0.02 2.47 16 36 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 37 H 0.17 2.99 8.06 -2.91 -0.02 2.96 16 38 H 0.23 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.09 3.65 4.39 -2.39 -0.01 3.64 16 Total: -1.00 -69.50 338.59 4.35 -65.15 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 1.03 Total: 21.27 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: 5.12 Total: -37.09 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -3.78 Total: -81.78 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.05 Total: -14.51 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -69.50 4.35 -65.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159601179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.448 kcal (2) G-P(sol) polarization free energy of solvation -69.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds