Wall clock time and date at job start Tue Mar 31 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.11997 * 2 1 4 4 C 1.37701 * 119.97864 * 179.97438 * 3 2 1 5 5 C 1.38927 * 120.78690 * 359.62297 * 4 3 2 6 6 C 1.39243 * 118.87240 * 0.57405 * 5 4 3 7 7 C 1.37976 * 120.24232 * 359.61840 * 6 5 4 8 8 C 1.50696 * 119.82203 * 180.02562 * 7 6 5 9 9 O 1.36133 * 111.22125 * 180.64479 * 5 4 3 10 10 C 1.43769 * 109.24108 * 340.95694 * 9 5 4 11 11 H 1.08995 * 110.75174 * 269.24640 * 10 9 5 12 12 C 1.50703 * 110.74636 * 146.08512 * 10 9 5 13 13 O 1.21290 * 119.99977 * 358.91142 * 12 10 9 14 14 N 1.34771 * 120.00516 * 178.91928 * 12 10 9 15 15 C 1.46499 * 120.00694 * 180.02562 * 14 12 10 16 16 H 1.09007 * 109.46342 * 324.99575 * 15 14 12 17 17 C 1.52998 * 109.47185 * 84.99510 * 15 14 12 18 18 C 1.50701 * 109.47260 * 204.99997 * 15 14 12 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27562 * 18 15 14 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 15 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 15 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 C 1.51938 * 132.10637 * 178.85191 * 4 3 2 27 27 H 1.08998 * 109.47585 * 89.99252 * 1 2 3 28 28 H 1.08996 * 109.46932 * 209.99873 * 1 2 3 29 29 H 1.09006 * 109.46478 * 329.99550 * 1 2 3 30 30 H 1.08007 * 120.01266 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.87630 * 179.59367 * 6 5 4 32 32 H 1.08999 * 109.47254 * 269.96570 * 8 7 6 33 33 H 1.09002 * 109.47477 * 29.96994 * 8 7 6 34 34 H 1.09004 * 109.46806 * 149.96559 * 8 7 6 35 35 H 0.97006 * 119.99365 * 359.97438 * 14 12 10 36 36 H 1.09005 * 109.46870 * 300.00240 * 17 15 14 37 37 H 1.08998 * 109.47156 * 60.00179 * 17 15 14 38 38 H 1.09004 * 109.46783 * 180.02562 * 17 15 14 39 39 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 40 40 H 1.08998 * 110.90504 * 77.76749 * 26 4 3 41 41 H 1.08996 * 111.10618 * 313.98555 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1970 0.0000 4 6 3.5785 1.1936 0.0005 5 6 4.2866 -0.0016 0.0089 6 6 3.5803 -1.2016 0.0046 7 6 2.2006 -1.1959 0.0001 8 6 1.4458 -2.5001 -0.0039 9 8 5.6295 0.2214 0.0222 10 6 5.8912 1.5643 -0.4195 11 1 6.0388 1.5939 -1.4990 12 6 7.0865 2.1384 0.2965 13 8 7.6667 1.4790 1.1331 14 7 7.5108 3.3845 0.0076 15 6 8.6731 3.9424 0.7032 16 1 8.6865 3.5846 1.7328 17 6 9.9537 3.4996 -0.0073 18 6 8.5888 5.4470 0.6953 19 1 7.7532 5.9385 0.2193 20 6 9.5816 6.1962 1.2904 21 7 9.5108 7.5095 1.2787 22 14 11.0271 5.3461 2.1132 23 1 12.1147 5.1480 1.1217 24 1 11.5243 6.1866 3.2320 25 1 10.5915 4.0278 2.6401 26 6 4.6000 2.3181 -0.0219 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5140 30 1 1.6636 2.1336 -0.0004 31 1 4.1145 -2.1402 0.0044 32 1 1.2666 -2.8131 -1.0325 33 1 2.0326 -3.2612 0.5104 34 1 0.4921 -2.3695 0.5075 35 1 7.0469 3.9117 -0.6617 36 1 10.0147 2.4113 -0.0015 37 1 9.9403 3.8573 -1.0368 38 1 10.8186 3.9144 0.5106 39 1 10.2090 8.0365 1.6976 40 1 4.7015 2.7711 0.9643 41 1 4.3414 3.0684 -0.7690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172917178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:54 Heat of formation + Delta-G solvation = -45.551938 kcal Electronic energy + Delta-G solvation = -22472.368825 eV Core-core repulsion = 19124.549063 eV Total energy + Delta-G solvation = -3347.819762 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36070 -39.12165 -37.93290 -35.05505 -33.43511 -32.52539 -32.13588 -31.24283 -29.65586 -27.13894 -26.75101 -25.22692 -23.56036 -22.17437 -21.39992 -20.46538 -19.74650 -17.79199 -17.07404 -16.88377 -16.24578 -15.57160 -15.22525 -14.99318 -14.66576 -14.39758 -14.09967 -13.67244 -13.51642 -13.20081 -13.02858 -12.99097 -12.82062 -12.66031 -12.38393 -12.23944 -12.20136 -11.93605 -11.77168 -11.48567 -11.29937 -10.95917 -10.84146 -10.68169 -10.22385 -9.73704 -9.28869 -9.21051 -8.85298 -8.80459 -8.27076 -8.02965 -6.24962 -4.28146 1.14073 1.25907 2.84951 3.05046 3.21397 3.33739 3.38390 3.48905 3.90596 4.28517 4.36755 4.47514 4.66708 4.73897 4.90958 4.94705 5.03441 5.05837 5.09956 5.25081 5.29283 5.37642 5.46361 5.52261 5.59804 5.64045 5.73369 5.81219 6.01853 6.14675 6.26490 6.31714 6.32872 6.43630 6.50765 6.55793 6.80443 7.07638 7.16353 7.20038 7.44529 8.05900 8.42239 8.68822 8.79853 9.35342 10.87019 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035671 B = 0.003236 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.765765 B = 8650.477589 C = 9152.424440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.064 4.064 4 C -0.172 4.172 5 C 0.109 3.891 6 C -0.136 4.136 7 C -0.055 4.055 8 C -0.115 4.115 9 O -0.274 6.274 10 C 0.063 3.937 11 H 0.109 0.891 12 C 0.508 3.492 13 O -0.532 6.532 14 N -0.694 5.694 15 C 0.238 3.762 16 H 0.050 0.950 17 C -0.163 4.163 18 C -0.536 4.536 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.891 5.891 22 Si 0.885 3.115 23 H -0.275 1.275 24 H -0.293 1.293 25 H -0.262 1.262 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.397 0.603 36 H 0.036 0.964 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.268 0.732 40 H 0.099 0.901 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -14.703 -5.895 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.121 4.121 3 C -0.082 4.082 4 C -0.173 4.173 5 C 0.063 3.937 6 C -0.155 4.155 7 C -0.055 4.055 8 C -0.172 4.172 9 O -0.187 6.187 10 C 0.004 3.996 11 H 0.127 0.873 12 C 0.291 3.709 13 O -0.408 6.408 14 N -0.344 5.344 15 C 0.135 3.865 16 H 0.068 0.932 17 C -0.221 4.221 18 C -0.574 4.574 19 H 0.099 0.901 20 C -0.125 4.125 21 N -0.528 5.528 22 Si 0.714 3.286 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.186 1.186 26 C -0.135 4.135 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.230 0.770 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.386 -15.130 -5.158 22.892 hybrid contribution 0.766 0.219 0.013 0.797 sum -15.620 -14.912 -5.145 22.199 Atomic orbital electron populations 1.20755 0.90942 1.02730 1.02128 1.19568 0.95982 0.92111 1.04475 1.20138 0.91585 0.97924 0.98568 1.20792 0.94615 0.94348 1.07559 1.19601 0.83325 0.94557 0.96214 1.20041 0.92718 0.95630 1.07129 1.19391 0.92222 0.95213 0.98646 1.20858 1.00054 0.93764 1.02499 1.86951 1.19361 1.30467 1.81874 1.23276 0.95408 0.81290 0.99672 0.87326 1.19897 0.84511 0.82898 0.83619 1.90710 1.57258 1.59604 1.33254 1.46083 1.32522 1.13668 1.42112 1.19154 0.80581 0.94225 0.92534 0.93232 1.22469 0.99352 0.98945 1.01348 1.21006 1.09907 0.87745 1.38763 0.90070 1.24820 0.97850 0.94702 0.95085 1.69862 1.34463 1.04615 1.43852 0.86885 0.82849 0.79829 0.79006 1.20229 1.22083 1.18629 1.21794 0.90225 0.96817 1.04641 0.91416 0.91275 0.91710 0.85650 0.85429 0.90946 0.91425 0.90901 0.76968 0.94448 0.92657 0.93291 0.92208 0.88276 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.61 36.01 0.35 -0.42 16 2 C -0.12 -1.23 5.89 -104.56 -0.62 -1.85 16 3 C -0.06 -0.72 9.70 -39.72 -0.39 -1.10 16 4 C -0.17 -2.28 6.28 -103.95 -0.65 -2.93 16 5 C 0.11 1.60 7.04 -38.95 -0.27 1.33 16 6 C -0.14 -1.71 9.71 -39.30 -0.38 -2.09 16 7 C -0.05 -0.57 5.87 -104.72 -0.61 -1.19 16 8 C -0.12 -0.83 9.60 36.00 0.35 -0.48 16 9 O -0.27 -4.71 10.39 -39.23 -0.41 -5.12 16 10 C 0.06 0.96 4.04 -26.98 -0.11 0.85 16 11 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 12 C 0.51 9.83 7.09 -10.99 -0.08 9.75 16 13 O -0.53 -12.69 16.23 -13.52 -0.22 -12.91 16 14 N -0.69 -13.44 5.07 -54.93 -0.28 -13.72 16 15 C 0.24 5.62 2.15 -69.08 -0.15 5.47 16 16 H 0.05 1.30 6.64 -51.93 -0.34 0.96 16 17 C -0.16 -3.63 8.96 37.16 0.33 -3.29 16 18 C -0.54 -14.23 9.31 -34.44 -0.32 -14.55 16 19 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 20 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 21 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 22 Si 0.88 21.65 24.37 -169.99 -4.14 17.50 16 23 H -0.28 -6.52 6.86 56.52 0.39 -6.13 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 26 C -0.10 -1.26 6.66 -26.37 -0.18 -1.44 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.41 5.95 -51.93 -0.31 0.10 16 29 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.07 0.43 5.94 -51.93 -0.31 0.12 16 35 H 0.40 6.49 8.54 -40.82 -0.35 6.15 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.05 1.12 3.25 -51.93 -0.17 0.96 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.10 1.40 7.92 -51.93 -0.41 0.99 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -32.99 333.53 -7.79 -40.78 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.71 Total: 3.58 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.83 Total: -9.83 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.50 Total: -39.03 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.63 Total: -18.03 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.50 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.99 -7.79 -40.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.771 kcal (2) G-P(sol) polarization free energy of solvation -32.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds