Wall clock time and date at job start Tue Mar 31 2020 05:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38387 * 120.11997 * 2 1 4 4 C 1.37701 * 119.97864 * 179.97438 * 3 2 1 5 5 C 1.38927 * 120.78690 * 359.62297 * 4 3 2 6 6 C 1.39243 * 118.87240 * 0.57405 * 5 4 3 7 7 C 1.37976 * 120.24232 * 359.61840 * 6 5 4 8 8 C 1.50696 * 119.82203 * 180.02562 * 7 6 5 9 9 O 1.36133 * 111.22125 * 180.64479 * 5 4 3 10 10 C 1.43769 * 109.24108 * 340.95694 * 9 5 4 11 11 H 1.08995 * 110.75174 * 269.24640 * 10 9 5 12 12 C 1.50703 * 110.74636 * 146.08512 * 10 9 5 13 13 O 1.21290 * 119.99977 * 358.91142 * 12 10 9 14 14 N 1.34771 * 120.00516 * 178.91928 * 12 10 9 15 15 C 1.46499 * 120.00694 * 180.02562 * 14 12 10 16 16 H 1.09007 * 109.46342 * 324.99575 * 15 14 12 17 17 C 1.52998 * 109.47185 * 84.99510 * 15 14 12 18 18 C 1.50701 * 109.47260 * 204.99997 * 15 14 12 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27562 * 18 15 14 21 21 N 1.31523 * 119.99908 * 179.72112 * 20 18 15 22 22 Si 1.86800 * 120.00405 * 359.71709 * 20 18 15 23 23 H 1.48500 * 109.47210 * 90.00069 * 22 20 18 24 24 H 1.48504 * 109.47424 * 210.00300 * 22 20 18 25 25 H 1.48502 * 109.46888 * 330.00390 * 22 20 18 26 26 C 1.51938 * 132.10637 * 178.85191 * 4 3 2 27 27 H 1.08998 * 109.47585 * 89.99252 * 1 2 3 28 28 H 1.08996 * 109.46932 * 209.99873 * 1 2 3 29 29 H 1.09006 * 109.46478 * 329.99550 * 1 2 3 30 30 H 1.08007 * 120.01266 * 359.97438 * 3 2 1 31 31 H 1.07999 * 119.87630 * 179.59367 * 6 5 4 32 32 H 1.08999 * 109.47254 * 269.96570 * 8 7 6 33 33 H 1.09002 * 109.47477 * 29.96994 * 8 7 6 34 34 H 1.09004 * 109.46806 * 149.96559 * 8 7 6 35 35 H 0.97006 * 119.99365 * 359.97438 * 14 12 10 36 36 H 1.09005 * 109.46870 * 300.00240 * 17 15 14 37 37 H 1.08998 * 109.47156 * 60.00179 * 17 15 14 38 38 H 1.09004 * 109.46783 * 180.02562 * 17 15 14 39 39 H 0.96995 * 120.00181 * 179.97438 * 21 20 18 40 40 H 1.08998 * 110.90504 * 77.76749 * 26 4 3 41 41 H 1.08996 * 111.10618 * 313.98555 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2015 1.1970 0.0000 4 6 3.5785 1.1936 0.0005 5 6 4.2866 -0.0016 0.0089 6 6 3.5803 -1.2016 0.0046 7 6 2.2006 -1.1959 0.0001 8 6 1.4458 -2.5001 -0.0039 9 8 5.6295 0.2214 0.0222 10 6 5.8912 1.5643 -0.4195 11 1 6.0388 1.5939 -1.4990 12 6 7.0865 2.1384 0.2965 13 8 7.6667 1.4790 1.1331 14 7 7.5108 3.3845 0.0076 15 6 8.6731 3.9424 0.7032 16 1 8.6865 3.5846 1.7328 17 6 9.9537 3.4996 -0.0073 18 6 8.5888 5.4470 0.6953 19 1 7.7532 5.9385 0.2193 20 6 9.5816 6.1962 1.2904 21 7 9.5108 7.5095 1.2787 22 14 11.0271 5.3461 2.1132 23 1 12.1147 5.1480 1.1217 24 1 11.5243 6.1866 3.2320 25 1 10.5915 4.0278 2.6401 26 6 4.6000 2.3181 -0.0219 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5140 30 1 1.6636 2.1336 -0.0004 31 1 4.1145 -2.1402 0.0044 32 1 1.2666 -2.8131 -1.0325 33 1 2.0326 -3.2612 0.5104 34 1 0.4921 -2.3695 0.5075 35 1 7.0469 3.9117 -0.6617 36 1 10.0147 2.4113 -0.0015 37 1 9.9403 3.8573 -1.0368 38 1 10.8186 3.9144 0.5106 39 1 10.2090 8.0365 1.6976 40 1 4.7015 2.7711 0.9643 41 1 4.3414 3.0684 -0.7690 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172917178.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:54 Heat of formation + Delta-G solvation = -66.834209 kcal Electronic energy + Delta-G solvation = -22473.291693 eV Core-core repulsion = 19124.549063 eV Total energy + Delta-G solvation = -3348.742631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.44795 -40.53906 -39.01431 -36.89102 -34.64151 -34.20557 -33.06713 -32.48175 -31.12186 -27.97360 -27.65894 -27.22856 -24.65974 -23.10000 -22.95651 -21.55597 -21.32207 -19.41003 -18.27856 -18.08319 -17.79984 -17.21352 -16.67287 -16.02087 -15.96319 -15.51504 -15.14915 -14.98744 -14.96148 -14.56212 -14.30482 -14.16685 -13.90304 -13.74656 -13.62702 -13.51344 -13.28926 -13.12267 -12.88155 -12.83438 -12.75754 -12.17316 -12.14286 -11.83974 -11.64630 -11.59912 -11.32058 -10.90348 -10.80730 -10.02556 -9.72253 -8.96334 -8.40030 -6.45954 0.25766 0.35772 1.25695 1.34643 1.43484 1.45642 1.68729 2.24378 2.50669 2.71742 2.96153 3.28093 3.42857 3.75122 3.86522 3.94063 3.97427 4.14039 4.28854 4.40898 4.44242 4.51320 4.59698 4.65419 4.68590 4.73781 4.79234 4.82555 4.94794 4.97329 5.05213 5.17564 5.25864 5.27234 5.35288 5.36461 5.40731 5.52776 5.65159 5.73928 6.08881 6.18108 6.54598 6.71543 7.13547 7.29487 8.74843 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035671 B = 0.003236 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.765765 B = 8650.477589 C = 9152.424440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.118 4.118 3 C -0.070 4.070 4 C -0.183 4.183 5 C 0.071 3.929 6 C -0.149 4.149 7 C -0.057 4.057 8 C -0.114 4.114 9 O -0.308 6.308 10 C 0.070 3.930 11 H 0.143 0.857 12 C 0.508 3.492 13 O -0.582 6.582 14 N -0.686 5.686 15 C 0.242 3.758 16 H 0.021 0.979 17 C -0.158 4.158 18 C -0.532 4.532 19 H 0.064 0.936 20 C 0.033 3.967 21 N -0.930 5.930 22 Si 0.934 3.066 23 H -0.258 1.258 24 H -0.292 1.292 25 H -0.266 1.266 26 C -0.091 4.091 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.413 0.587 36 H 0.043 0.957 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.271 0.729 40 H 0.081 0.919 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.130 -15.818 -6.994 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.184 4.184 5 C 0.026 3.974 6 C -0.167 4.167 7 C -0.057 4.057 8 C -0.170 4.170 9 O -0.221 6.221 10 C 0.011 3.989 11 H 0.160 0.840 12 C 0.294 3.706 13 O -0.462 6.462 14 N -0.337 5.337 15 C 0.138 3.862 16 H 0.039 0.961 17 C -0.216 4.216 18 C -0.570 4.570 19 H 0.082 0.918 20 C -0.167 4.167 21 N -0.569 5.569 22 Si 0.762 3.238 23 H -0.184 1.184 24 H -0.219 1.219 25 H -0.191 1.191 26 C -0.128 4.128 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.165 0.835 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.249 0.751 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.436 -16.243 -6.293 25.364 hybrid contribution 1.234 0.517 0.354 1.384 sum -17.202 -15.726 -5.939 24.052 Atomic orbital electron populations 1.20844 0.88353 1.03906 1.03356 1.20036 0.97838 0.91551 1.02425 1.20482 0.90864 0.99460 0.97972 1.20897 0.95457 0.93588 1.08416 1.19935 0.82506 0.96081 0.98881 1.20336 0.93817 0.95259 1.07312 1.19813 0.91543 0.97027 0.97327 1.20943 1.00377 0.92028 1.03692 1.86883 1.21221 1.31152 1.82876 1.23278 0.94040 0.81143 1.00475 0.83985 1.20613 0.85062 0.82143 0.82794 1.90678 1.59153 1.60815 1.35551 1.45836 1.31688 1.14089 1.42057 1.18821 0.82972 0.92467 0.91972 0.96116 1.22373 0.97977 0.99348 1.01888 1.21203 1.08971 0.89237 1.37595 0.91799 1.25487 1.00308 0.95127 0.95825 1.69957 1.35670 1.05890 1.45387 0.86078 0.80684 0.78515 0.78539 1.18377 1.21912 1.19132 1.21787 0.89146 0.97275 1.04623 0.89998 0.89855 0.90875 0.83485 0.85096 0.89532 0.91109 0.89151 0.75057 0.93785 0.91039 0.93930 0.91967 0.90096 0.84711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.61 71.24 0.68 -0.43 16 2 C -0.12 -2.09 5.89 -19.83 -0.12 -2.21 16 3 C -0.07 -1.41 9.70 22.18 0.22 -1.20 16 4 C -0.18 -4.66 6.28 -19.43 -0.12 -4.78 16 5 C 0.07 2.08 7.04 22.68 0.16 2.24 16 6 C -0.15 -3.65 9.71 22.45 0.22 -3.43 16 7 C -0.06 -1.08 5.87 -19.93 -0.12 -1.19 16 8 C -0.11 -1.31 9.60 71.23 0.68 -0.63 16 9 O -0.31 -10.78 10.39 -76.83 -0.80 -11.58 16 10 C 0.07 2.09 4.04 30.43 0.12 2.21 16 11 H 0.14 3.23 8.14 -2.39 -0.02 3.21 16 12 C 0.51 19.82 7.09 87.66 0.62 20.44 16 13 O -0.58 -28.55 16.23 15.17 0.25 -28.31 16 14 N -0.69 -26.40 5.07 -446.09 -2.26 -28.66 16 15 C 0.24 11.46 2.15 44.24 0.10 11.55 16 16 H 0.02 1.12 6.64 -2.38 -0.02 1.10 16 17 C -0.16 -6.87 8.96 71.98 0.65 -6.22 16 18 C -0.53 -28.41 9.31 25.60 0.24 -28.17 16 19 H 0.06 3.56 7.98 -2.91 -0.02 3.54 16 20 C 0.03 1.82 5.45 84.65 0.46 2.29 16 21 N -0.93 -54.95 13.96 21.45 0.30 -54.65 16 22 Si 0.93 44.61 24.37 68.60 1.67 46.29 16 23 H -0.26 -11.54 6.86 99.48 0.68 -10.86 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 H -0.27 -12.84 6.54 99.48 0.65 -12.19 16 26 C -0.09 -2.28 6.66 30.83 0.21 -2.07 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.08 0.64 5.95 -2.39 -0.01 0.63 16 29 H 0.07 0.67 8.09 -2.38 -0.02 0.65 16 30 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.78 8.08 -2.39 -0.02 0.76 16 34 H 0.09 0.73 5.94 -2.39 -0.01 0.72 16 35 H 0.41 13.13 8.54 -92.70 -0.79 12.33 16 36 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.04 1.90 3.25 -2.38 -0.01 1.89 16 39 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 40 H 0.08 2.30 7.92 -2.39 -0.02 2.28 16 41 H 0.13 2.38 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -73.02 333.53 3.33 -69.69 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.18 Total: 18.83 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 3.99 Total: -11.61 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.96 Total: -83.31 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.55 Total: -39.89 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.67 Total: 46.29 kcal Total: -73.02 3.33 -69.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917178.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.852 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds