Wall clock time and date at job start Tue Mar 31 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38390 * 120.11412 * 2 1 4 4 C 1.37696 * 119.97552 * 180.02562 * 3 2 1 5 5 C 1.38920 * 120.78959 * 0.22954 * 4 3 2 6 6 C 1.39240 * 118.87532 * 359.58510 * 5 4 3 7 7 C 1.37971 * 120.23935 * 0.28690 * 6 5 4 8 8 C 1.50701 * 119.82751 * 180.02562 * 7 6 5 9 9 O 1.36133 * 111.24242 * 179.40131 * 5 4 3 10 10 C 1.43759 * 109.28744 * 18.63415 * 9 5 4 11 11 H 1.08996 * 110.75093 * 90.75364 * 10 9 5 12 12 C 1.50707 * 110.74630 * 214.10004 * 10 9 5 13 13 O 1.21276 * 119.99504 * 358.37629 * 12 10 9 14 14 N 1.34771 * 119.99898 * 178.37956 * 12 10 9 15 15 C 1.46503 * 119.99890 * 179.97438 * 14 12 10 16 16 H 1.08996 * 109.47143 * 325.00277 * 15 14 12 17 17 C 1.52997 * 109.46947 * 84.99964 * 15 14 12 18 18 C 1.50699 * 109.47326 * 204.99838 * 15 14 12 19 19 H 1.08003 * 119.99897 * 0.02562 * 18 15 14 20 20 C 1.37872 * 120.00446 * 180.02562 * 18 15 14 21 21 N 1.31518 * 119.99629 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 120.00431 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47166 * 59.99746 * 22 20 18 24 24 H 1.48500 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47115 * 300.00255 * 22 20 18 26 26 C 1.51646 * 132.18185 * 180.28790 * 4 3 2 27 27 H 1.08999 * 109.47168 * 270.04372 * 1 2 3 28 28 H 1.08997 * 109.47611 * 30.04466 * 1 2 3 29 29 H 1.08999 * 109.47416 * 150.04811 * 1 2 3 30 30 H 1.08008 * 120.01572 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.88617 * 180.30370 * 6 5 4 32 32 H 1.08996 * 109.47138 * 89.99832 * 8 7 6 33 33 H 1.09003 * 109.47288 * 210.00291 * 8 7 6 34 34 H 1.09007 * 109.46755 * 330.00026 * 8 7 6 35 35 H 0.96999 * 120.00146 * 359.97438 * 14 12 10 36 36 H 1.09003 * 109.47289 * 180.02562 * 17 15 14 37 37 H 1.09007 * 109.47256 * 299.99838 * 17 15 14 38 38 H 1.09001 * 109.47635 * 60.00141 * 17 15 14 39 39 H 0.97001 * 119.99671 * 179.97438 * 21 20 18 40 40 H 1.09001 * 110.94430 * 282.42142 * 26 4 3 41 41 H 1.08994 * 110.94645 * 46.11216 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5783 1.1938 -0.0005 5 6 4.2865 -0.0013 -0.0059 6 6 3.5804 -1.2014 -0.0018 7 6 2.2007 -1.1958 0.0013 8 6 1.4459 -2.5001 0.0062 9 8 5.6295 0.2212 -0.0187 10 6 5.8918 1.5678 0.4110 11 1 6.0377 1.6073 1.4904 12 6 7.0861 2.1357 -0.3118 13 8 7.6948 1.4521 -1.1073 14 7 7.4777 3.4032 -0.0739 15 6 8.6390 3.9550 -0.7760 16 1 9.3819 3.1708 -0.9218 17 6 8.2004 4.5012 -2.1362 18 6 9.2386 5.0690 0.0429 19 1 8.7987 5.3387 0.9918 20 6 10.3485 5.7440 -0.4190 21 7 10.8843 5.4153 -1.5742 22 14 11.0920 7.1243 0.5964 23 1 11.5184 6.5936 1.9162 24 1 12.2691 7.6838 -0.1153 25 1 10.0799 8.1925 0.7961 26 6 4.5993 2.3150 0.0050 27 1 -0.3633 0.0008 1.0276 28 1 -0.3634 0.8895 -0.5145 29 1 -0.3634 -0.8904 -0.5131 30 1 1.6634 2.1337 0.0004 31 1 4.1146 -2.1401 -0.0009 32 1 1.2662 -2.8120 1.0350 33 1 0.4924 -2.3700 -0.5058 34 1 2.0330 -3.2616 -0.5071 35 1 6.9906 3.9500 0.5622 36 1 9.0646 4.9114 -2.6589 37 1 7.7668 3.6954 -2.7287 38 1 7.4575 5.2854 -1.9906 39 1 11.6650 5.8904 -1.8994 40 1 4.6994 2.7558 -0.9869 41 1 4.3402 3.0744 0.7427 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172917186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:57 Heat of formation + Delta-G solvation = -53.882507 kcal Electronic energy + Delta-G solvation = -22420.082200 eV Core-core repulsion = 19071.901197 eV Total energy + Delta-G solvation = -3348.181003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31645 -38.98322 -37.82791 -34.83600 -33.41479 -32.50624 -32.10031 -31.04123 -28.91877 -27.07922 -26.62532 -25.28798 -23.46756 -22.14343 -21.33512 -20.41802 -19.52904 -17.67531 -17.08523 -16.82669 -15.88661 -15.45299 -15.11302 -14.88393 -14.53248 -14.34925 -14.07550 -13.56694 -13.51739 -13.17683 -13.01319 -12.82211 -12.61840 -12.46567 -12.28007 -12.18545 -11.91110 -11.61215 -11.46762 -11.14102 -10.98205 -10.94070 -10.77575 -10.62882 -10.36624 -10.26758 -9.11771 -9.08194 -8.82905 -8.59246 -8.02488 -7.98350 -6.15572 -4.25608 1.16466 1.28718 2.96052 3.19940 3.23807 3.29250 3.30352 3.52286 4.00096 4.30608 4.44180 4.52864 4.69393 4.76704 4.94300 5.00319 5.06654 5.12050 5.17077 5.28892 5.37528 5.40637 5.47633 5.54875 5.62255 5.65708 5.74995 5.83472 6.04502 6.17069 6.34949 6.45941 6.58871 6.77847 6.91222 7.09473 7.16909 7.36434 7.49958 7.64173 7.86096 8.10125 8.54727 8.71883 8.99731 9.41711 10.90411 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.038854 B = 0.003018 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.465702 B = 9274.197261 C = 9554.351708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.064 4.064 4 C -0.174 4.174 5 C 0.111 3.889 6 C -0.137 4.137 7 C -0.054 4.054 8 C -0.115 4.115 9 O -0.273 6.273 10 C 0.062 3.938 11 H 0.108 0.892 12 C 0.506 3.494 13 O -0.530 6.530 14 N -0.701 5.701 15 C 0.266 3.734 16 H 0.050 0.950 17 C -0.148 4.148 18 C -0.536 4.536 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.903 3.097 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.276 1.276 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.390 0.610 36 H 0.092 0.908 37 H 0.015 0.985 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.097 0.903 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.422 -8.978 5.211 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.175 4.175 5 C 0.065 3.935 6 C -0.156 4.156 7 C -0.054 4.054 8 C -0.172 4.172 9 O -0.186 6.186 10 C 0.002 3.998 11 H 0.126 0.874 12 C 0.288 3.712 13 O -0.407 6.407 14 N -0.351 5.351 15 C 0.165 3.835 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.575 4.575 19 H 0.080 0.920 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.135 4.135 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.222 0.778 36 H 0.110 0.890 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.115 0.885 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.585 -9.555 4.424 22.236 hybrid contribution 0.303 1.253 0.860 1.550 sum -19.282 -8.301 5.284 21.648 Atomic orbital electron populations 1.20747 0.90980 1.02684 1.02089 1.19555 0.95942 0.92126 1.04679 1.20115 0.91564 0.97860 0.98678 1.20732 0.94602 0.94441 1.07732 1.19631 0.83447 0.94549 0.95891 1.20048 0.92716 0.95687 1.07152 1.19388 0.92228 0.95198 0.98599 1.20859 1.00034 0.93787 1.02492 1.86959 1.19187 1.30326 1.82102 1.23345 0.95530 0.81015 0.99876 0.87406 1.19832 0.84696 0.83217 0.83411 1.90710 1.55332 1.59338 1.35316 1.46442 1.32912 1.11490 1.44257 1.18796 0.81697 0.93760 0.89257 0.93219 1.22093 1.01563 0.98137 0.98870 1.21156 1.13238 1.17610 1.05446 0.92013 1.24891 0.96382 0.97286 0.95122 1.69894 1.22210 1.41050 1.18842 0.86480 0.78638 0.81732 0.80079 1.20146 1.21098 1.20131 1.21735 0.90457 0.96909 1.04357 0.91459 0.91770 0.91287 0.85753 0.85401 0.90953 0.90926 0.91409 0.77761 0.88991 0.96625 0.95338 0.92429 0.88465 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 9.61 36.01 0.35 -0.43 16 2 C -0.12 -1.27 5.89 -104.56 -0.62 -1.88 16 3 C -0.06 -0.72 9.70 -39.72 -0.39 -1.11 16 4 C -0.17 -2.35 6.27 -104.10 -0.65 -3.00 16 5 C 0.11 1.69 7.04 -38.96 -0.27 1.41 16 6 C -0.14 -1.77 9.71 -39.31 -0.38 -2.15 16 7 C -0.05 -0.58 5.87 -104.72 -0.61 -1.19 16 8 C -0.12 -0.85 9.60 36.01 0.35 -0.51 16 9 O -0.27 -4.92 10.39 -39.23 -0.41 -5.33 16 10 C 0.06 1.00 4.05 -26.98 -0.11 0.89 16 11 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 12 C 0.51 10.41 7.10 -10.98 -0.08 10.33 16 13 O -0.53 -13.49 16.23 -13.50 -0.22 -13.71 16 14 N -0.70 -14.34 5.06 -54.93 -0.28 -14.62 16 15 C 0.27 6.73 2.56 -69.08 -0.18 6.55 16 16 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 17 C -0.15 -3.66 9.26 37.16 0.34 -3.32 16 18 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16 19 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -24.75 11.32 55.43 0.63 -24.12 16 22 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 C -0.10 -1.28 6.63 -26.52 -0.18 -1.46 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.07 0.42 5.95 -51.93 -0.31 0.11 16 30 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.44 5.94 -51.93 -0.31 0.13 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.39 6.64 8.54 -40.82 -0.35 6.29 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 37 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.10 1.38 7.92 -51.93 -0.41 0.96 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -32.27 340.32 -8.84 -41.11 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.85 Total: 4.65 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.82 Total: -8.49 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.35 Total: -38.74 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.63 Total: -19.04 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.27 -8.84 -41.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.775 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds