Wall clock time and date at job start Tue Mar 31 2020 05:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38390 * 120.11412 * 2 1 4 4 C 1.37696 * 119.97552 * 180.02562 * 3 2 1 5 5 C 1.38920 * 120.78959 * 0.22954 * 4 3 2 6 6 C 1.39240 * 118.87532 * 359.58510 * 5 4 3 7 7 C 1.37971 * 120.23935 * 0.28690 * 6 5 4 8 8 C 1.50701 * 119.82751 * 180.02562 * 7 6 5 9 9 O 1.36133 * 111.24242 * 179.40131 * 5 4 3 10 10 C 1.43759 * 109.28744 * 18.63415 * 9 5 4 11 11 H 1.08996 * 110.75093 * 90.75364 * 10 9 5 12 12 C 1.50707 * 110.74630 * 214.10004 * 10 9 5 13 13 O 1.21276 * 119.99504 * 358.37629 * 12 10 9 14 14 N 1.34771 * 119.99898 * 178.37956 * 12 10 9 15 15 C 1.46503 * 119.99890 * 179.97438 * 14 12 10 16 16 H 1.08996 * 109.47143 * 325.00277 * 15 14 12 17 17 C 1.52997 * 109.46947 * 84.99964 * 15 14 12 18 18 C 1.50699 * 109.47326 * 204.99838 * 15 14 12 19 19 H 1.08003 * 119.99897 * 0.02562 * 18 15 14 20 20 C 1.37872 * 120.00446 * 180.02562 * 18 15 14 21 21 N 1.31518 * 119.99629 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 120.00431 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47166 * 59.99746 * 22 20 18 24 24 H 1.48500 * 109.47332 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47115 * 300.00255 * 22 20 18 26 26 C 1.51646 * 132.18185 * 180.28790 * 4 3 2 27 27 H 1.08999 * 109.47168 * 270.04372 * 1 2 3 28 28 H 1.08997 * 109.47611 * 30.04466 * 1 2 3 29 29 H 1.08999 * 109.47416 * 150.04811 * 1 2 3 30 30 H 1.08008 * 120.01572 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.88617 * 180.30370 * 6 5 4 32 32 H 1.08996 * 109.47138 * 89.99832 * 8 7 6 33 33 H 1.09003 * 109.47288 * 210.00291 * 8 7 6 34 34 H 1.09007 * 109.46755 * 330.00026 * 8 7 6 35 35 H 0.96999 * 120.00146 * 359.97438 * 14 12 10 36 36 H 1.09003 * 109.47289 * 180.02562 * 17 15 14 37 37 H 1.09007 * 109.47256 * 299.99838 * 17 15 14 38 38 H 1.09001 * 109.47635 * 60.00141 * 17 15 14 39 39 H 0.97001 * 119.99671 * 179.97438 * 21 20 18 40 40 H 1.09001 * 110.94430 * 282.42142 * 26 4 3 41 41 H 1.08994 * 110.94645 * 46.11216 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5783 1.1938 -0.0005 5 6 4.2865 -0.0013 -0.0059 6 6 3.5804 -1.2014 -0.0018 7 6 2.2007 -1.1958 0.0013 8 6 1.4459 -2.5001 0.0062 9 8 5.6295 0.2212 -0.0187 10 6 5.8918 1.5678 0.4110 11 1 6.0377 1.6073 1.4904 12 6 7.0861 2.1357 -0.3118 13 8 7.6948 1.4521 -1.1073 14 7 7.4777 3.4032 -0.0739 15 6 8.6390 3.9550 -0.7760 16 1 9.3819 3.1708 -0.9218 17 6 8.2004 4.5012 -2.1362 18 6 9.2386 5.0690 0.0429 19 1 8.7987 5.3387 0.9918 20 6 10.3485 5.7440 -0.4190 21 7 10.8843 5.4153 -1.5742 22 14 11.0920 7.1243 0.5964 23 1 11.5184 6.5936 1.9162 24 1 12.2691 7.6838 -0.1153 25 1 10.0799 8.1925 0.7961 26 6 4.5993 2.3150 0.0050 27 1 -0.3633 0.0008 1.0276 28 1 -0.3634 0.8895 -0.5145 29 1 -0.3634 -0.8904 -0.5131 30 1 1.6634 2.1337 0.0004 31 1 4.1146 -2.1401 -0.0009 32 1 1.2662 -2.8120 1.0350 33 1 0.4924 -2.3700 -0.5058 34 1 2.0330 -3.2616 -0.5071 35 1 6.9906 3.9500 0.5622 36 1 9.0646 4.9114 -2.6589 37 1 7.7668 3.6954 -2.7287 38 1 7.4575 5.2854 -1.9906 39 1 11.6650 5.8904 -1.8994 40 1 4.6994 2.7558 -0.9869 41 1 4.3402 3.0744 0.7427 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172917186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:56 Heat of formation + Delta-G solvation = -73.530739 kcal Electronic energy + Delta-G solvation = -22420.934212 eV Core-core repulsion = 19071.901197 eV Total energy + Delta-G solvation = -3349.033014 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44285 -40.45737 -38.98905 -36.76793 -34.63945 -34.14277 -33.00129 -32.21854 -30.61334 -27.92465 -27.61264 -27.34534 -24.58886 -23.08950 -22.98634 -21.50430 -21.25231 -19.28569 -18.30951 -17.93647 -17.55856 -17.06780 -16.57694 -16.02661 -15.92724 -15.42214 -15.16565 -14.94175 -14.65432 -14.46331 -14.28488 -13.87694 -13.69210 -13.66549 -13.50895 -13.15017 -13.06580 -12.95226 -12.83374 -12.75806 -12.73462 -12.29014 -12.17201 -12.13516 -11.81264 -11.60169 -11.15697 -10.79711 -10.60190 -9.88974 -9.71814 -8.95543 -8.18864 -6.37246 0.26229 0.36300 1.45152 1.47955 1.52915 1.56242 1.75365 2.38963 2.55138 2.75336 3.11756 3.30727 3.45863 3.79460 3.87498 3.96664 3.98595 4.14739 4.29429 4.45068 4.60209 4.68451 4.71092 4.73883 4.79457 4.82699 4.87829 4.97545 5.04523 5.05756 5.18353 5.26334 5.35718 5.37143 5.41162 5.53715 5.61988 5.66621 5.74744 5.85827 6.05205 6.18545 6.68796 6.81437 7.26900 7.42242 8.87569 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.038854 B = 0.003018 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.465702 B = 9274.197261 C = 9554.351708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.067 4.067 4 C -0.182 4.182 5 C 0.069 3.931 6 C -0.151 4.151 7 C -0.057 4.057 8 C -0.114 4.114 9 O -0.311 6.311 10 C 0.069 3.931 11 H 0.139 0.861 12 C 0.503 3.497 13 O -0.589 6.589 14 N -0.690 5.690 15 C 0.271 3.729 16 H -0.003 1.003 17 C -0.135 4.135 18 C -0.548 4.548 19 H 0.079 0.921 20 C 0.013 3.987 21 N -0.919 5.919 22 Si 0.976 3.024 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.261 1.261 26 C -0.088 4.088 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.008 0.992 38 H 0.046 0.954 39 H 0.266 0.734 40 H 0.083 0.917 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.669 -8.006 7.110 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.085 4.085 4 C -0.183 4.183 5 C 0.024 3.976 6 C -0.170 4.170 7 C -0.057 4.057 8 C -0.170 4.170 9 O -0.225 6.225 10 C 0.010 3.990 11 H 0.156 0.844 12 C 0.289 3.711 13 O -0.469 6.469 14 N -0.340 5.340 15 C 0.168 3.832 16 H 0.014 0.986 17 C -0.193 4.193 18 C -0.586 4.586 19 H 0.097 0.903 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.800 3.200 23 H -0.196 1.196 24 H -0.214 1.214 25 H -0.186 1.186 26 C -0.125 4.125 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.168 0.832 31 H 0.146 0.854 32 H 0.104 0.896 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.027 0.973 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.887 -8.573 6.360 25.254 hybrid contribution 1.227 0.836 0.239 1.504 sum -21.660 -7.737 6.598 23.928 Atomic orbital electron populations 1.20839 0.88251 1.03942 1.03363 1.20045 0.97877 0.91524 1.02437 1.20483 0.90708 0.99504 0.97833 1.20845 0.95510 0.93522 1.08445 1.19985 0.82501 0.96267 0.98839 1.20336 0.93917 0.95226 1.07500 1.19809 0.91430 0.97124 0.97334 1.20945 1.00387 0.92033 1.03677 1.86891 1.21362 1.31072 1.83182 1.23303 0.94321 0.81049 1.00352 0.84401 1.20674 0.85345 0.82552 0.82556 1.90675 1.57551 1.60700 1.37993 1.46105 1.31780 1.11965 1.44185 1.18406 0.82328 0.92246 0.90193 0.98556 1.21913 1.00874 0.98179 0.98371 1.21504 1.13566 1.17441 1.06062 0.90302 1.25842 0.96837 0.99855 0.96139 1.70058 1.22659 1.42345 1.20649 0.85343 0.77772 0.78652 0.78245 1.19564 1.21364 1.18551 1.21728 0.88763 0.97365 1.04663 0.90000 0.90725 0.89923 0.83163 0.85367 0.89553 0.89045 0.91232 0.75344 0.91331 0.97305 0.93456 0.92495 0.89851 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 9.61 71.24 0.68 -0.40 16 2 C -0.12 -2.10 5.89 -19.83 -0.12 -2.22 16 3 C -0.07 -1.34 9.70 22.18 0.22 -1.13 16 4 C -0.18 -4.69 6.27 -19.53 -0.12 -4.81 16 5 C 0.07 2.12 7.04 22.67 0.16 2.28 16 6 C -0.15 -3.90 9.71 22.45 0.22 -3.68 16 7 C -0.06 -1.11 5.87 -19.93 -0.12 -1.23 16 8 C -0.11 -1.38 9.60 71.24 0.68 -0.70 16 9 O -0.31 -11.65 10.39 -76.83 -0.80 -12.45 16 10 C 0.07 2.21 4.05 30.43 0.12 2.33 16 11 H 0.14 3.51 8.14 -2.39 -0.02 3.49 16 12 C 0.50 21.38 7.10 87.66 0.62 22.01 16 13 O -0.59 -31.84 16.23 15.21 0.25 -31.59 16 14 N -0.69 -28.46 5.06 -446.10 -2.26 -30.72 16 15 C 0.27 14.15 2.56 44.24 0.11 14.26 16 16 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 17 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 18 C -0.55 -28.59 8.73 25.60 0.22 -28.37 16 19 H 0.08 3.76 7.74 -2.91 -0.02 3.73 16 20 C 0.01 0.71 5.30 84.65 0.45 1.16 16 21 N -0.92 -52.85 11.32 21.45 0.24 -52.60 16 22 Si 0.98 41.45 29.54 68.60 2.03 43.47 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 25 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 26 C -0.09 -2.20 6.63 30.73 0.20 -2.00 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 29 H 0.08 0.63 5.95 -2.39 -0.01 0.62 16 30 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.77 5.94 -2.39 -0.01 0.76 16 34 H 0.07 0.83 8.08 -2.38 -0.02 0.81 16 35 H 0.41 13.44 8.54 -92.71 -0.79 12.64 16 36 H 0.07 3.83 6.07 -2.39 -0.01 3.82 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 40 H 0.08 2.31 7.92 -2.39 -0.02 2.29 16 41 H 0.14 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -74.30 340.32 3.72 -70.58 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.25 Total: 22.01 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 4.01 Total: -8.70 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -2.01 Total: -83.32 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -0.55 Total: -44.04 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -74.30 3.72 -70.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.950 kcal (2) G-P(sol) polarization free energy of solvation -74.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds