Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38394 * 120.11673 * 2 1 4 4 C 1.37694 * 119.98211 * 179.97438 * 3 2 1 5 5 C 1.38935 * 120.77748 * 0.38145 * 4 3 2 6 6 C 1.39232 * 118.88444 * 359.44026 * 5 4 3 7 7 C 1.37975 * 120.23631 * 0.36156 * 6 5 4 8 8 C 1.50700 * 119.82692 * 179.97438 * 7 6 5 9 9 O 1.36135 * 111.20939 * 178.96249 * 5 4 3 10 10 C 1.43783 * 109.20679 * 19.36660 * 9 5 4 11 11 H 1.09004 * 110.74986 * 213.58421 * 10 9 5 12 12 C 1.50696 * 110.74795 * 90.41333 * 10 9 5 13 13 O 1.21276 * 120.00441 * 356.45502 * 12 10 9 14 14 N 1.34781 * 119.99872 * 176.45652 * 12 10 9 15 15 C 1.46495 * 119.99865 * 179.97438 * 14 12 10 16 16 H 1.09004 * 109.47552 * 35.00316 * 15 14 12 17 17 C 1.53000 * 109.47565 * 274.99850 * 15 14 12 18 18 C 1.50706 * 109.47089 * 154.99837 * 15 14 12 19 19 H 1.08007 * 119.99702 * 35.00501 * 18 15 14 20 20 C 1.37871 * 120.00228 * 214.99943 * 18 15 14 21 21 N 1.31516 * 120.00265 * 184.91201 * 20 18 15 22 22 Si 1.86797 * 119.99914 * 4.92039 * 20 18 15 23 23 H 1.48505 * 109.47195 * 84.83056 * 22 20 18 24 24 H 1.48508 * 109.47121 * 204.82832 * 22 20 18 25 25 H 1.48491 * 109.47548 * 324.82718 * 22 20 18 26 26 C 1.51645 * 132.18519 * 180.90945 * 4 3 2 27 27 H 1.09003 * 109.46858 * 270.02045 * 1 2 3 28 28 H 1.08998 * 109.47241 * 30.01767 * 1 2 3 29 29 H 1.08997 * 109.46813 * 150.02714 * 1 2 3 30 30 H 1.08002 * 120.00858 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.88330 * 180.39149 * 6 5 4 32 32 H 1.09000 * 109.47161 * 90.00107 * 8 7 6 33 33 H 1.08999 * 109.47688 * 210.00274 * 8 7 6 34 34 H 1.09001 * 109.46779 * 330.00431 * 8 7 6 35 35 H 0.97000 * 120.00008 * 359.97438 * 14 12 10 36 36 H 1.09002 * 109.46457 * 55.03513 * 17 15 14 37 37 H 1.08998 * 109.47348 * 175.03704 * 17 15 14 38 38 H 1.08999 * 109.47280 * 295.04176 * 17 15 14 39 39 H 0.96994 * 120.00385 * 179.97438 * 21 20 18 40 40 H 1.09001 * 110.93284 * 282.55395 * 26 4 3 41 41 H 1.09000 * 110.93268 * 46.22284 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5783 1.1939 0.0005 5 6 4.2865 -0.0014 -0.0069 6 6 3.5804 -1.2015 -0.0030 7 6 2.2007 -1.1958 0.0006 8 6 1.4458 -2.5001 0.0042 9 8 5.6292 0.2217 -0.0279 10 6 5.8926 1.5642 0.4147 11 1 6.7574 1.9789 -0.1033 12 6 6.0972 1.6038 1.9072 13 8 5.9644 0.5933 2.5645 14 7 6.4276 2.7623 2.5115 15 6 6.6259 2.8009 3.9625 16 1 7.0740 1.8639 4.2931 17 6 5.2763 2.9938 4.6568 18 6 7.5400 3.9463 4.3142 19 1 7.4969 4.8651 3.7481 20 6 8.4311 3.8215 5.3588 21 7 9.1602 4.8519 5.7280 22 14 8.6032 2.1886 6.2496 23 1 9.5581 1.3214 5.5137 24 1 9.1093 2.4261 7.6254 25 1 7.2790 1.5200 6.3179 26 6 4.5993 2.3150 0.0185 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6634 2.1336 0.0004 31 1 4.1146 -2.1401 -0.0022 32 1 1.2664 -2.8132 1.0327 33 1 0.4922 -2.3695 -0.5074 34 1 2.0328 -3.2610 -0.5101 35 1 6.5342 3.5705 1.9858 36 1 4.5867 2.2140 4.3335 37 1 5.4114 2.9344 5.7368 38 1 4.8691 3.9703 4.3947 39 1 9.7869 4.7641 6.4631 40 1 4.6983 2.7674 -0.9682 41 1 4.3404 3.0656 0.7653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172917191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = -54.494712 kcal Electronic energy + Delta-G solvation = -22957.282182 eV Core-core repulsion = 19609.074632 eV Total energy + Delta-G solvation = -3348.207550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.38326 -38.96464 -37.77625 -34.89488 -33.36788 -32.46590 -32.04508 -31.17343 -29.52652 -27.04377 -26.59045 -25.34559 -23.55571 -22.14715 -21.22848 -20.33187 -19.66085 -17.97143 -17.06461 -16.52142 -16.39432 -15.32234 -15.16141 -14.95082 -14.43193 -14.27929 -14.05670 -13.72386 -13.48205 -13.04425 -12.96159 -12.86372 -12.55976 -12.51238 -12.35845 -12.27674 -12.11759 -11.79266 -11.42473 -11.34874 -11.13758 -11.01271 -10.85604 -10.74522 -10.60298 -9.90755 -9.25133 -9.20452 -8.74580 -8.72922 -8.17560 -7.89414 -6.27350 -4.31496 1.25353 1.37681 2.96819 3.23932 3.26507 3.32350 3.40090 3.68389 3.85565 4.29729 4.36558 4.51250 4.75451 4.83589 4.97158 5.04069 5.06866 5.15632 5.22930 5.33580 5.38016 5.47263 5.56685 5.58313 5.63569 5.71388 5.72730 5.88350 6.10898 6.25365 6.29607 6.42210 6.47940 6.53457 6.63619 6.65409 6.88827 7.12503 7.21555 7.32465 7.48641 8.06446 8.48203 8.71996 8.86384 9.34494 10.84181 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025841 B = 0.003868 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.288595 B = 7237.763317 C = 7303.195499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.122 4.122 3 C -0.065 4.065 4 C -0.174 4.174 5 C 0.118 3.882 6 C -0.133 4.133 7 C -0.055 4.055 8 C -0.115 4.115 9 O -0.277 6.277 10 C 0.061 3.939 11 H 0.139 0.861 12 C 0.485 3.515 13 O -0.538 6.538 14 N -0.698 5.698 15 C 0.232 3.768 16 H 0.050 0.950 17 C -0.147 4.147 18 C -0.531 4.531 19 H 0.080 0.920 20 C 0.082 3.918 21 N -0.887 5.887 22 Si 0.873 3.127 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.261 1.261 26 C -0.097 4.097 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.394 0.606 36 H 0.028 0.972 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.268 0.732 40 H 0.100 0.900 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.012 -7.763 -14.098 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.175 4.175 5 C 0.073 3.927 6 C -0.151 4.151 7 C -0.055 4.055 8 C -0.171 4.171 9 O -0.189 6.189 10 C 0.001 3.999 11 H 0.156 0.844 12 C 0.269 3.731 13 O -0.416 6.416 14 N -0.348 5.348 15 C 0.130 3.870 16 H 0.068 0.932 17 C -0.206 4.206 18 C -0.569 4.569 19 H 0.098 0.902 20 C -0.122 4.122 21 N -0.524 5.524 22 Si 0.700 3.300 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.185 1.185 26 C -0.134 4.134 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.227 0.773 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.758 -8.563 -13.520 21.769 hybrid contribution 0.468 -0.115 0.413 0.635 sum -14.290 -8.678 -13.106 21.243 Atomic orbital electron populations 1.20745 0.91019 1.02507 1.02198 1.19542 0.95916 0.92142 1.04609 1.20082 0.91584 0.97808 0.98817 1.20686 0.94656 0.94359 1.07802 1.19492 0.83216 0.94461 0.95532 1.20041 0.92726 0.95762 1.06591 1.19383 0.92268 0.95185 0.98673 1.20853 0.99896 0.93770 1.02607 1.86902 1.20193 1.31842 1.79992 1.23449 1.00413 0.81565 0.94508 0.84398 1.20716 0.78384 0.84933 0.89115 1.90684 1.51206 1.33937 1.65746 1.46614 1.67870 1.09526 1.10818 1.19155 0.93738 0.98393 0.75762 0.93202 1.22212 0.98299 0.99526 1.00551 1.20991 1.19213 0.99631 1.17074 0.90232 1.24931 0.94405 0.96562 0.96350 1.69874 1.24413 1.29966 1.28111 0.86904 0.79622 0.84316 0.79154 1.19785 1.21088 1.18524 1.21735 0.90841 0.97059 1.03782 0.91400 0.91831 0.91332 0.85856 0.85549 0.90896 0.90985 0.91502 0.77276 0.95309 0.92833 0.93354 0.92167 0.88220 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 9.61 36.00 0.35 -0.56 16 2 C -0.12 -1.43 5.89 -104.56 -0.62 -2.04 16 3 C -0.06 -0.81 9.70 -39.72 -0.39 -1.20 16 4 C -0.17 -2.49 6.26 -104.10 -0.65 -3.15 16 5 C 0.12 1.91 6.82 -38.95 -0.27 1.65 16 6 C -0.13 -1.91 9.71 -39.31 -0.38 -2.30 16 7 C -0.05 -0.67 5.87 -104.72 -0.61 -1.29 16 8 C -0.11 -1.01 9.60 36.01 0.35 -0.66 16 9 O -0.28 -4.77 10.44 -39.21 -0.41 -5.18 16 10 C 0.06 0.92 4.11 -26.99 -0.11 0.81 16 11 H 0.14 1.63 8.14 -51.93 -0.42 1.21 16 12 C 0.49 9.60 7.00 -10.99 -0.08 9.52 16 13 O -0.54 -13.07 16.11 -13.48 -0.22 -13.29 16 14 N -0.70 -13.83 5.07 -54.93 -0.28 -14.10 16 15 C 0.23 5.51 2.22 -69.08 -0.15 5.36 16 16 H 0.05 1.31 4.73 -51.93 -0.25 1.07 16 17 C -0.15 -3.24 9.47 37.16 0.35 -2.89 16 18 C -0.53 -14.11 9.05 -34.44 -0.31 -14.42 16 19 H 0.08 2.20 8.06 -52.48 -0.42 1.78 16 20 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 21 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 22 Si 0.87 21.67 26.99 -169.99 -4.59 17.08 16 23 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.26 -6.43 6.82 56.52 0.39 -6.04 16 26 C -0.10 -1.20 6.64 -26.52 -0.18 -1.38 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 29 H 0.07 0.47 5.95 -51.93 -0.31 0.17 16 30 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.50 5.94 -51.93 -0.31 0.20 16 34 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 35 H 0.39 6.59 8.59 -40.82 -0.35 6.24 16 36 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 1.18 7.91 -51.93 -0.41 0.77 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -33.52 339.75 -8.24 -41.76 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -5.84 Total: 4.12 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.80 Total: -10.36 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.50 Total: -39.26 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.63 Total: -18.46 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.59 Total: 17.08 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.52 -8.24 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.739 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds