Wall clock time and date at job start Tue Mar 31 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38394 * 120.11673 * 2 1 4 4 C 1.37694 * 119.98211 * 179.97438 * 3 2 1 5 5 C 1.38935 * 120.77748 * 0.38145 * 4 3 2 6 6 C 1.39232 * 118.88444 * 359.44026 * 5 4 3 7 7 C 1.37975 * 120.23631 * 0.36156 * 6 5 4 8 8 C 1.50700 * 119.82692 * 179.97438 * 7 6 5 9 9 O 1.36135 * 111.20939 * 178.96249 * 5 4 3 10 10 C 1.43783 * 109.20679 * 19.36660 * 9 5 4 11 11 H 1.09004 * 110.74986 * 213.58421 * 10 9 5 12 12 C 1.50696 * 110.74795 * 90.41333 * 10 9 5 13 13 O 1.21276 * 120.00441 * 356.45502 * 12 10 9 14 14 N 1.34781 * 119.99872 * 176.45652 * 12 10 9 15 15 C 1.46495 * 119.99865 * 179.97438 * 14 12 10 16 16 H 1.09004 * 109.47552 * 35.00316 * 15 14 12 17 17 C 1.53000 * 109.47565 * 274.99850 * 15 14 12 18 18 C 1.50706 * 109.47089 * 154.99837 * 15 14 12 19 19 H 1.08007 * 119.99702 * 35.00501 * 18 15 14 20 20 C 1.37871 * 120.00228 * 214.99943 * 18 15 14 21 21 N 1.31516 * 120.00265 * 184.91201 * 20 18 15 22 22 Si 1.86797 * 119.99914 * 4.92039 * 20 18 15 23 23 H 1.48505 * 109.47195 * 84.83056 * 22 20 18 24 24 H 1.48508 * 109.47121 * 204.82832 * 22 20 18 25 25 H 1.48491 * 109.47548 * 324.82718 * 22 20 18 26 26 C 1.51645 * 132.18519 * 180.90945 * 4 3 2 27 27 H 1.09003 * 109.46858 * 270.02045 * 1 2 3 28 28 H 1.08998 * 109.47241 * 30.01767 * 1 2 3 29 29 H 1.08997 * 109.46813 * 150.02714 * 1 2 3 30 30 H 1.08002 * 120.00858 * 0.02562 * 3 2 1 31 31 H 1.07997 * 119.88330 * 180.39149 * 6 5 4 32 32 H 1.09000 * 109.47161 * 90.00107 * 8 7 6 33 33 H 1.08999 * 109.47688 * 210.00274 * 8 7 6 34 34 H 1.09001 * 109.46779 * 330.00431 * 8 7 6 35 35 H 0.97000 * 120.00008 * 359.97438 * 14 12 10 36 36 H 1.09002 * 109.46457 * 55.03513 * 17 15 14 37 37 H 1.08998 * 109.47348 * 175.03704 * 17 15 14 38 38 H 1.08999 * 109.47280 * 295.04176 * 17 15 14 39 39 H 0.96994 * 120.00385 * 179.97438 * 21 20 18 40 40 H 1.09001 * 110.93284 * 282.55395 * 26 4 3 41 41 H 1.09000 * 110.93268 * 46.22284 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2014 1.1971 0.0000 4 6 3.5783 1.1939 0.0005 5 6 4.2865 -0.0014 -0.0069 6 6 3.5804 -1.2015 -0.0030 7 6 2.2007 -1.1958 0.0006 8 6 1.4458 -2.5001 0.0042 9 8 5.6292 0.2217 -0.0279 10 6 5.8926 1.5642 0.4147 11 1 6.7574 1.9789 -0.1033 12 6 6.0972 1.6038 1.9072 13 8 5.9644 0.5933 2.5645 14 7 6.4276 2.7623 2.5115 15 6 6.6259 2.8009 3.9625 16 1 7.0740 1.8639 4.2931 17 6 5.2763 2.9938 4.6568 18 6 7.5400 3.9463 4.3142 19 1 7.4969 4.8651 3.7481 20 6 8.4311 3.8215 5.3588 21 7 9.1602 4.8519 5.7280 22 14 8.6032 2.1886 6.2496 23 1 9.5581 1.3214 5.5137 24 1 9.1093 2.4261 7.6254 25 1 7.2790 1.5200 6.3179 26 6 4.5993 2.3150 0.0185 27 1 -0.3633 0.0004 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6634 2.1336 0.0004 31 1 4.1146 -2.1401 -0.0022 32 1 1.2664 -2.8132 1.0327 33 1 0.4922 -2.3695 -0.5074 34 1 2.0328 -3.2610 -0.5101 35 1 6.5342 3.5705 1.9858 36 1 4.5867 2.2140 4.3335 37 1 5.4114 2.9344 5.7368 38 1 4.8691 3.9703 4.3947 39 1 9.7869 4.7641 6.4631 40 1 4.6983 2.7674 -0.9682 41 1 4.3404 3.0656 0.7653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172917191.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:59 Heat of formation + Delta-G solvation = -75.590421 kcal Electronic energy + Delta-G solvation = -22958.196961 eV Core-core repulsion = 19609.074632 eV Total energy + Delta-G solvation = -3349.122329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.52078 -40.36170 -38.95248 -36.73387 -34.60980 -34.18471 -33.03714 -32.42268 -31.01295 -27.93814 -27.56876 -27.35634 -24.70155 -23.14433 -22.74946 -21.51968 -21.27146 -19.61583 -18.29875 -18.11298 -17.67644 -16.91551 -16.42572 -16.15594 -15.85310 -15.52260 -15.20455 -14.95483 -14.73716 -14.58754 -14.31871 -14.04831 -13.93991 -13.57558 -13.47382 -13.39096 -13.16469 -13.08683 -12.86418 -12.84390 -12.64624 -12.50145 -12.15505 -12.02983 -11.90737 -11.69694 -11.28221 -10.89760 -10.70125 -9.92410 -9.69953 -8.92986 -8.42326 -6.48084 0.27935 0.36709 1.25067 1.30666 1.40776 1.53550 2.01084 2.23481 2.42565 2.70317 2.98955 3.37440 3.45872 3.75954 3.88987 3.95924 4.13734 4.17060 4.29452 4.40664 4.47613 4.62806 4.66002 4.69554 4.71951 4.75432 4.77445 4.83534 4.94362 5.03490 5.04254 5.15493 5.25124 5.31339 5.35058 5.40034 5.41265 5.63954 5.65744 5.73505 6.07758 6.19129 6.56682 6.78408 7.17120 7.34224 8.72351 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025841 B = 0.003868 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.288595 B = 7237.763317 C = 7303.195499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.122 4.122 3 C -0.074 4.074 4 C -0.187 4.187 5 C 0.075 3.925 6 C -0.154 4.154 7 C -0.063 4.063 8 C -0.113 4.113 9 O -0.300 6.300 10 C 0.064 3.936 11 H 0.174 0.826 12 C 0.483 3.517 13 O -0.589 6.589 14 N -0.692 5.692 15 C 0.234 3.766 16 H 0.025 0.975 17 C -0.139 4.139 18 C -0.524 4.524 19 H 0.064 0.936 20 C 0.038 3.962 21 N -0.926 5.926 22 Si 0.921 3.079 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.261 1.261 26 C -0.087 4.087 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.124 0.876 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.410 0.590 36 H 0.030 0.970 37 H 0.047 0.953 38 H 0.063 0.937 39 H 0.271 0.729 40 H 0.137 0.863 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.224 -7.758 -15.395 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.188 4.188 5 C 0.031 3.969 6 C -0.173 4.173 7 C -0.063 4.063 8 C -0.169 4.169 9 O -0.213 6.213 10 C 0.004 3.996 11 H 0.190 0.810 12 C 0.269 3.731 13 O -0.469 6.469 14 N -0.343 5.343 15 C 0.130 3.870 16 H 0.043 0.957 17 C -0.198 4.198 18 C -0.562 4.562 19 H 0.082 0.918 20 C -0.163 4.163 21 N -0.564 5.564 22 Si 0.747 3.253 23 H -0.202 1.202 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.123 4.123 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.166 0.834 31 H 0.142 0.858 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.247 0.753 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.154 0.846 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.984 -8.540 -14.845 24.120 hybrid contribution 1.070 -0.141 0.753 1.315 sum -15.915 -8.682 -14.093 22.962 Atomic orbital electron populations 1.20827 0.88354 1.04148 1.02980 1.20048 0.97875 0.91658 1.02661 1.20484 0.91156 0.99290 0.98271 1.21013 0.95651 0.94255 1.07848 1.19889 0.83090 0.95910 0.98037 1.20349 0.94011 0.95533 1.07405 1.19813 0.91619 0.97118 0.97755 1.20927 1.00574 0.92200 1.03244 1.86865 1.21304 1.32927 1.80222 1.23599 1.03341 0.81848 0.90787 0.80950 1.21577 0.76681 0.83626 0.91223 1.90654 1.53234 1.35594 1.67466 1.46291 1.67827 1.10684 1.09484 1.18905 0.93965 0.95927 0.78186 0.95698 1.22093 0.97266 1.00468 0.99963 1.21157 1.19054 0.99760 1.16275 0.91776 1.25524 0.94640 0.98805 0.97375 1.69953 1.25698 1.31516 1.29239 0.86144 0.79310 0.81199 0.78679 1.20230 1.19973 1.18592 1.21806 0.88483 0.96253 1.05808 0.90855 0.90341 0.89659 0.83412 0.85825 0.90499 0.88734 0.90908 0.75336 0.95068 0.93424 0.91760 0.91927 0.84557 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.61 71.24 0.68 -0.73 16 2 C -0.12 -2.59 5.89 -19.83 -0.12 -2.71 16 3 C -0.07 -1.69 9.70 22.18 0.22 -1.48 16 4 C -0.19 -5.08 6.26 -19.52 -0.12 -5.20 16 5 C 0.08 2.43 6.82 22.68 0.15 2.59 16 6 C -0.15 -4.51 9.71 22.45 0.22 -4.29 16 7 C -0.06 -1.46 5.87 -19.92 -0.12 -1.58 16 8 C -0.11 -1.76 9.60 71.24 0.68 -1.08 16 9 O -0.30 -10.35 10.44 -76.88 -0.80 -11.16 16 10 C 0.06 1.84 4.11 30.43 0.13 1.97 16 11 H 0.17 3.66 8.14 -2.38 -0.02 3.64 16 12 C 0.48 18.88 7.00 87.65 0.61 19.50 16 13 O -0.59 -29.03 16.11 15.18 0.24 -28.79 16 14 N -0.69 -26.79 5.07 -446.10 -2.26 -29.05 16 15 C 0.23 11.05 2.22 44.25 0.10 11.15 16 16 H 0.03 1.32 4.73 -2.38 -0.01 1.31 16 17 C -0.14 -6.01 9.47 71.98 0.68 -5.33 16 18 C -0.52 -27.83 9.05 25.60 0.23 -27.60 16 19 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 20 C 0.04 2.10 5.47 84.65 0.46 2.56 16 21 N -0.93 -54.47 13.96 21.45 0.30 -54.17 16 22 Si 0.92 44.98 26.99 68.60 1.85 46.84 16 23 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.26 -12.68 6.82 99.48 0.68 -12.00 16 26 C -0.09 -1.94 6.64 30.73 0.20 -1.73 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 29 H 0.08 0.85 5.95 -2.39 -0.01 0.83 16 30 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 31 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.02 5.94 -2.39 -0.01 1.01 16 34 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 35 H 0.41 13.11 8.59 -92.71 -0.80 12.31 16 36 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.10 2.20 7.91 -2.39 -0.02 2.19 16 Total: -1.00 -74.06 339.75 3.57 -70.49 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.22 Total: 19.79 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 4.02 Total: -13.96 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -1.96 Total: -83.22 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.56 Total: -39.94 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.85 Total: 46.84 kcal Total: -74.06 3.57 -70.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917191.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.101 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds