Wall clock time and date at job start Tue Mar 31 2020 05:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38396 * 120.11106 * 2 1 4 4 C 1.37701 * 119.97519 * 179.97438 * 3 2 1 5 5 C 1.38929 * 120.78629 * 0.31336 * 4 3 2 6 6 C 1.39251 * 118.87237 * 359.55107 * 5 4 3 7 7 C 1.37965 * 120.24234 * 0.30084 * 6 5 4 8 8 C 1.50698 * 119.82558 * 179.97438 * 7 6 5 9 9 O 1.36129 * 111.24365 * 179.38243 * 5 4 3 10 10 C 1.43763 * 109.28597 * 18.63167 * 9 5 4 11 11 H 1.09005 * 110.90185 * 90.82541 * 10 9 5 12 12 C 1.50696 * 110.74577 * 214.09336 * 10 9 5 13 13 O 1.21284 * 120.00183 * 358.38920 * 12 10 9 14 14 N 1.34776 * 120.00271 * 178.38129 * 12 10 9 15 15 C 1.46499 * 120.00348 * 180.02562 * 14 12 10 16 16 H 1.09000 * 109.47197 * 34.99139 * 15 14 12 17 17 C 1.53005 * 109.46437 * 274.99648 * 15 14 12 18 18 C 1.50701 * 109.47260 * 155.00133 * 15 14 12 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27562 * 18 15 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47301 * 119.99669 * 22 20 18 25 25 H 1.48498 * 109.47430 * 239.99516 * 22 20 18 26 26 C 1.51645 * 132.18995 * 180.34487 * 4 3 2 27 27 H 1.08994 * 109.47070 * 270.00114 * 1 2 3 28 28 H 1.09000 * 109.46757 * 30.00183 * 1 2 3 29 29 H 1.08999 * 109.46316 * 149.99985 * 1 2 3 30 30 H 1.07995 * 120.01762 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.87105 * 180.32149 * 6 5 4 32 32 H 1.09007 * 109.47256 * 89.99601 * 8 7 6 33 33 H 1.08993 * 109.47737 * 210.00015 * 8 7 6 34 34 H 1.09005 * 109.47160 * 330.00226 * 8 7 6 35 35 H 0.97000 * 119.99698 * 359.97438 * 14 12 10 36 36 H 1.08996 * 109.47069 * 60.00420 * 17 15 14 37 37 H 1.09004 * 109.46658 * 179.97438 * 17 15 14 38 38 H 1.08995 * 109.47438 * 299.99560 * 17 15 14 39 39 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 40 40 H 1.08997 * 110.93995 * 46.13878 * 26 4 3 41 41 H 1.09001 * 110.94524 * 282.44362 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.1972 0.0000 4 6 3.5783 1.1939 0.0005 5 6 4.2866 -0.0012 -0.0055 6 6 3.5804 -1.2014 -0.0025 7 6 2.2007 -1.1957 0.0000 8 6 1.4459 -2.5000 0.0027 9 8 5.6295 0.2213 -0.0174 10 6 5.8916 1.5676 0.4135 11 1 6.0386 1.6088 1.4928 12 6 7.0863 2.1359 -0.3080 13 8 7.6955 1.4530 -1.1040 14 7 7.4779 3.4032 -0.0689 15 6 8.6390 3.9559 -0.7708 16 1 8.6777 3.5527 -1.7827 17 6 9.9170 3.5749 -0.0207 18 6 8.5212 5.4570 -0.8321 19 1 7.6666 5.9500 -0.3927 20 6 9.5012 6.2005 -1.4547 21 7 10.5417 5.6002 -1.9901 22 14 9.3513 8.0607 -1.5376 23 1 8.0972 8.4866 -0.8660 24 1 10.5146 8.6820 -0.8549 25 1 9.3226 8.4922 -2.9582 26 6 4.5994 2.3151 0.0074 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 1.6635 2.1337 -0.0004 31 1 4.1147 -2.1400 -0.0018 32 1 1.2658 -2.8136 1.0310 33 1 0.4927 -2.3693 -0.5095 34 1 2.0333 -3.2608 -0.5115 35 1 6.9905 3.9495 0.5673 36 1 10.0023 2.4892 0.0237 37 1 10.7810 3.9858 -0.5431 38 1 9.8784 3.9781 0.9912 39 1 11.2310 6.1233 -2.4284 40 1 4.3399 3.0738 0.7457 41 1 4.7000 2.7566 -0.9840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172917198.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:02 Heat of formation + Delta-G solvation = -54.017760 kcal Electronic energy + Delta-G solvation = -22415.137286 eV Core-core repulsion = 19066.950418 eV Total energy + Delta-G solvation = -3348.186868 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.30740 -38.97845 -37.82321 -34.83379 -33.40644 -32.50565 -32.09245 -31.04143 -28.90296 -27.06672 -26.62800 -25.29296 -23.47410 -22.13498 -21.29087 -20.42109 -19.55081 -17.68533 -17.03471 -16.82949 -15.86770 -15.50511 -15.07693 -14.89640 -14.52720 -14.36482 -14.00469 -13.73456 -13.37432 -13.15546 -13.00246 -12.76674 -12.63274 -12.46012 -12.34377 -12.17667 -11.83070 -11.66102 -11.45834 -11.13755 -11.00486 -10.90756 -10.78780 -10.61972 -10.33668 -10.27874 -9.10853 -9.07234 -8.81879 -8.60337 -8.01549 -7.98217 -6.16144 -4.25982 1.17510 1.29578 2.96791 3.19018 3.21489 3.29671 3.32089 3.53236 4.00928 4.30540 4.45012 4.53832 4.70173 4.77684 4.95018 5.00805 5.07612 5.13140 5.16427 5.29580 5.38224 5.41306 5.48499 5.55669 5.63125 5.66899 5.77624 5.84466 6.05685 6.18047 6.35940 6.46841 6.59667 6.78413 6.92153 7.09824 7.17573 7.36559 7.50244 7.64219 7.86064 8.09916 8.54707 8.71959 8.99774 9.41488 10.89961 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.003199 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.865158 B = 8751.623828 C = 9446.497505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 C -0.064 4.064 4 C -0.174 4.174 5 C 0.110 3.890 6 C -0.137 4.137 7 C -0.054 4.054 8 C -0.115 4.115 9 O -0.273 6.273 10 C 0.063 3.937 11 H 0.108 0.892 12 C 0.506 3.494 13 O -0.530 6.530 14 N -0.701 5.701 15 C 0.265 3.735 16 H 0.050 0.950 17 C -0.148 4.148 18 C -0.534 4.534 19 H 0.063 0.937 20 C 0.066 3.934 21 N -0.882 5.882 22 Si 0.903 3.097 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.283 1.283 26 C -0.098 4.098 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.390 0.610 36 H 0.015 0.985 37 H 0.091 0.909 38 H 0.028 0.972 39 H 0.265 0.735 40 H 0.100 0.900 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 -9.781 7.026 22.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.174 4.174 5 C 0.064 3.936 6 C -0.156 4.156 7 C -0.054 4.054 8 C -0.172 4.172 9 O -0.186 6.186 10 C 0.003 3.997 11 H 0.125 0.875 12 C 0.288 3.712 13 O -0.407 6.407 14 N -0.351 5.351 15 C 0.164 3.836 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.573 4.573 19 H 0.081 0.919 20 C -0.137 4.137 21 N -0.520 5.520 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.209 1.209 26 C -0.135 4.135 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.222 0.778 36 H 0.034 0.966 37 H 0.110 0.890 38 H 0.047 0.953 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -18.127 -10.366 6.265 21.801 hybrid contribution -0.110 1.484 0.308 1.520 sum -18.237 -8.882 6.573 21.323 Atomic orbital electron populations 1.20748 0.90984 1.02692 1.02081 1.19557 0.95943 0.92125 1.04657 1.20121 0.91576 0.97870 0.98659 1.20742 0.94608 0.94448 1.07638 1.19633 0.83433 0.94552 0.95949 1.20046 0.92713 0.95665 1.07176 1.19381 0.92227 0.95192 0.98642 1.20856 1.00039 0.93790 1.02477 1.86955 1.19206 1.30341 1.82075 1.23330 0.95583 0.81046 0.99783 0.87478 1.19843 0.84608 0.83326 0.83411 1.90711 1.55683 1.59144 1.35169 1.46444 1.32917 1.11376 1.44369 1.18810 0.79800 0.92802 0.92169 0.93232 1.22093 1.02304 0.96983 0.99323 1.21226 1.07439 0.90449 1.38172 0.91909 1.24895 0.94947 0.99072 0.94810 1.69911 1.10078 1.35606 1.36373 0.86375 0.78093 0.84638 0.77878 1.19708 1.20840 1.20858 1.21742 0.90389 0.96874 1.04497 0.91462 0.91759 0.91289 0.85736 0.85417 0.90968 0.90927 0.91416 0.77759 0.96552 0.89018 0.95313 0.92544 0.88209 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.61 36.01 0.35 -0.44 16 2 C -0.12 -1.28 5.89 -104.56 -0.62 -1.90 16 3 C -0.06 -0.74 9.70 -39.72 -0.39 -1.12 16 4 C -0.17 -2.37 6.27 -104.10 -0.65 -3.02 16 5 C 0.11 1.69 7.04 -38.95 -0.27 1.41 16 6 C -0.14 -1.78 9.71 -39.31 -0.38 -2.16 16 7 C -0.05 -0.59 5.87 -104.72 -0.61 -1.20 16 8 C -0.12 -0.86 9.60 36.00 0.35 -0.52 16 9 O -0.27 -4.92 10.39 -39.21 -0.41 -5.33 16 10 C 0.06 1.00 4.05 -26.99 -0.11 0.89 16 11 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 12 C 0.51 10.40 7.10 -10.99 -0.08 10.32 16 13 O -0.53 -13.49 16.23 -13.51 -0.22 -13.71 16 14 N -0.70 -14.33 5.06 -54.93 -0.28 -14.61 16 15 C 0.27 6.70 2.56 -69.08 -0.18 6.53 16 16 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 17 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 18 C -0.53 -13.92 8.72 -34.44 -0.30 -14.22 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 21 N -0.88 -24.72 11.33 55.43 0.63 -24.09 16 22 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.10 -1.31 6.63 -26.52 -0.18 -1.49 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.07 0.42 5.95 -51.93 -0.31 0.12 16 30 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 32 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.45 5.94 -51.93 -0.31 0.14 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.39 6.64 8.54 -40.82 -0.35 6.29 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 2.47 6.08 -51.93 -0.32 2.15 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 1.44 7.92 -51.93 -0.41 1.03 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -32.26 340.34 -8.84 -41.10 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.85 Total: 4.75 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.82 Total: -8.59 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.35 Total: -38.70 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.63 Total: -19.04 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.26 -8.84 -41.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917198.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.919 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds